Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004135

Physical Location & Seq

Genomic Coordinates Reverse (-)

24544853 .. 24551439

Gene Structure 6587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGCCCTTGGAAGGGATTTTCATAGAACCCTCTTCAGCCACAACTACGACTAGTTCTTGTCCAATTCCTGATCTTTCTCTTCAAATTAGTCCTCCCAACACTTCCTCTAATTCATCATCAATTTTCAATACCACCATTAGTGAAACCCAAAATCCCACTACTAGTAATTCCCAAGCTCACACTGAGCTATCCCTAGGGCGATGCTTCACCGGCGGAGCTCACGAGCAAGAACCACCACAAAACCCTTATCAACAACAAAGTTTTCATCTTCACCGTTCCAACAGTCATTTAAGCCACTTAAATCACGGTGTTTCGCTGCTTGATGTCTCGTCATCAGAGGGTTTAAGGCCGATTAAAGGGATTCCGGTCTATCATCAGAACCGTTCATTCCCCTTCTTGCCTATGGACAATATGATCACAAGAGATCATCACAAGGATTCAAGGATGTGCTTCTACCCAAAACCTCCTCCACCTTCTTCCTATAACCATCCTTCTTTTCCTTCAGCTGCCTCATGTTCCCCTAATACGCCGTCTGCGCCTTATTTCGGAGGAGGAGGAGCCGGCGGTTTTGATCCCATGTCGAGATTTACCGGGTTCTCACCCGTGGATGTGTTTAAATCTAACAATCAACTGCACCACCACCATCATCTTCATCAACTTCATCATCACAATCAGTATGGTATTGGAGGGGTTGGACCAATGTCTGAGGGATCTCATCACGGTATCATGAGATCGAGGTTTTTGCCAAAGCTGCCGACAAAGCGGAGTATGAGAGCTCCGAGGATGCGATGGACAAGCACTCTCCATGCCAGATTTGTTCATGCTGTTGAGTTTCTTGGTGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTTGAGCTCATGGATGTCAAGGATCTCACTCTAGCTCATGTCAAGAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCAGCTTCTTCAGGGCAATCGGATGGATCTGGCGAGGACGACATCCTCTCTCCGATTTGCAGCGCAACGGATCAGCATGCCGTACGCAATACTCAGCAATTTCCAGAGCAAAGAGGACCGTCCGATCGGTCCGTGCAACCAGAGGCGGACTACACTTCCAGTACCACTCTTTGGAGTAACTCTTCAAGTAGAGAGGCGTTTCCACATACTAATTCTCATGACATGGACGGGCAAACACCAGCAGTATCCTCCCAATTACAGAAAATATCTGGTCATAAAATTCAGGAATGTGATTCAAACAACCTGAAGAGCTATCTGGGATCTAACTTTGATACCAGACATCCAAGCTTGGAGTTCACGTTAGGCAGACCGGACTGGAATGGCAAAGCACATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010051 GO:0010158 GO:0010229 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

453

Amino Acids

49.84

Weight (kDa)

7.06

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16560
fragaria_vesca	FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780
malus_domestica	MD06G1233700.v1.1 MD09G1265400.v1.1 MD14G1240500.v1.1 MD17G1261500.v1.1
prunus_persica	Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.5G238100_v2.0.a1
pyrus_communis	pycom06g20830 pycom09g17910 pycom14g20200 pycom17g26200
rosa_chinensis	RchiOBHm_Chr7g0177801 RchiOBHm_Chr7g0177811
rosa_laevigata	RLG00000005502
rosa_multiflora	Rmu_sc0006214.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275540
rosa_rugosa	Rorug06G0409500 Rorug06G0409500 Rorug06G0409500
rosa_samantha	Rh7AG009300 Rh7BG009400 Rh7CG009500 Rh7DG009400
rosa_wichuraiana	Rw7G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1131
AciI	CCGC	4 cut(s)	213, 564, 763, 1106
AclWI	GGATC	6 cut(s)	566, 718, 900, 994, 1038, 1288
AcoI	YGGCCR	1 cut(s)	841
AcsI	RAATTY	1 cut(s)	1239
AcuI	CTGAAG	4 cut(s)	18, 486, 954, 1286
AfaI	GTAC	2 cut(s)	1044, 1123
AfiI	CCNNNNNNNGG	5 cut(s)	11, 12, 356, 545, 1131
AgsI	TTSAA	5 cut(s)	83, 127, 441, 1146, 1257
AhlI	ACTAGT	2 cut(s)	50, 161
AleI	CACNNNNGTG	1 cut(s)	1354
Alw21I	GWGCWC	3 cut(s)	220, 778, 879
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	6 cut(s)	566, 718, 900, 994, 1038, 1288
AoxI	GGCC	2 cut(s)	347, 841
ApeKI	GCWGC	5 cut(s)	316, 506, 751, 962, 1020
ApoI	RAATTY	1 cut(s)	1239
AspA2I	CCTAGG	1 cut(s)	193
AspLEI	GCGC	2 cut(s)	538, 1025
AspS9I	GGNCC	3 cut(s)	695, 1076, 1089
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	3 cut(s)	199, 263, 591
AvaII	GGWCC	3 cut(s)	695, 1076, 1089
AvrII	CCTAGG	1 cut(s)	193
BaeI	ACNNNNGTAYC	2 cut(s)	914, 947
BalI	TGGCCA	1 cut(s)	843
BanII	GRGCYC	3 cut(s)	220, 778, 879
BauI	CACGAG	1 cut(s)	221
Bbv12I	GWGCWC	3 cut(s)	220, 778, 879
BbvI	GCAGC	5 cut(s)	303, 493, 738, 974, 1032
BccI	CCATC	4 cut(s)	495, 651, 783, 977
BceAI	ACGGC	2 cut(s)	514, 1025
BcgI	CGANNNNNNTGC	2 cut(s)	724, 758
BciVI	GTATCC	1 cut(s)	1216
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	331
BcuI	ACTAGT	2 cut(s)	50, 161
BfaI	CTAG	4 cut(s)	51, 162, 194, 902
BfmI	CTRYAG	1 cut(s)	960
BfuI	GTATCC	1 cut(s)	1216
BisI	GCNGC	5 cut(s)	317, 507, 752, 963, 1021
BlnI	CCTAGG	1 cut(s)	193
BlsI	GCNGC	5 cut(s)	318, 508, 753, 964, 1022
Bme1390I	CCNGG	1 cut(s)	592
Bme18I	GGWCC	3 cut(s)	695, 1076, 1089
BmgT120I	GGNCC	3 cut(s)	695, 1076, 1089
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	1 cut(s)	592
BmsI	GCATC	2 cut(s)	191, 774
BoxI	GACNNNNGTC	1 cut(s)	700
BpuEI	CTTGAG	1 cut(s)	893
BpuMI	CCSGG	1 cut(s)	592
BsaJI	CCNNGG	4 cut(s)	6, 193, 603, 779
BsaWI	WCCGGW	2 cut(s)	364, 1330
BsaXI	ACNNNNNCTCC	2 cut(s)	1304, 1334
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 12, 356, 545, 1131
Bse118I	RCCGGY	2 cut(s)	209, 560
Bse1I	ACTGG	2 cut(s)	1119, 1340
BseDI	CCNNGG	4 cut(s)	6, 193, 603, 779
BseGI	GGATG	8 cut(s)	450, 487, 613, 789, 889, 988, 1002, 1300
BseLI	CCNNNNNNNGG	5 cut(s)	11, 12, 356, 545, 1131
BseMII	CTCAG	3 cut(s)	174, 696, 1067
BseNI	ACTGG	2 cut(s)	1119, 1340
BseRI	GAGGAG	4 cut(s)	456, 564, 567, 570
BseXI	GCAGC	5 cut(s)	303, 493, 738, 974, 1032
BsgI	GTGCAG	1 cut(s)	617
Bsh1285I	CGRYCG	1 cut(s)	1087
BshFI	GGCC	2 cut(s)	349, 843
BsiEI	CGRYCG	1 cut(s)	1087
BsiHKAI	GWGCWC	3 cut(s)	220, 778, 879
BsiSI	CCGG	5 cut(s)	210, 365, 561, 591, 1331
BsiWI	CGTACG	1 cut(s)	1042
BslI	CCNNNNNNNGG	5 cut(s)	11, 12, 356, 545, 1131
BsmAI	GTCTC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	349, 843
Bsp1286I	GDGCHC	3 cut(s)	220, 778, 879
BspACI	CCGC	4 cut(s)	213, 564, 763, 1106
BspANI	GGCC	2 cut(s)	349, 843
BspCNI	CTCAG	3 cut(s)	175, 697, 1066
BspHI	TCATGA	2 cut(s)	726, 1177
BspLI	GGNNCC	1 cut(s)	559
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	6 cut(s)	566, 718, 900, 994, 1038, 1288
BspQI	GCTCTTC	1 cut(s)	1262
BsrFI	RCCGGY	2 cut(s)	209, 560
BsrI	ACTGG	2 cut(s)	1119, 1340
BssAI	RCCGGY	2 cut(s)	209, 560
BssECI	CCNNGG	4 cut(s)	6, 193, 603, 779
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	2 cut(s)	6, 193
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	7 cut(s)	275, 284, 308, 383, 722, 940, 1080
Bst6I	CTCTTC	4 cut(s)	37, 84, 1147, 1262
BstC8I	GCNNGC	3 cut(s)	562, 960, 1038
BstDEI	CTNAG	3 cut(s)	183, 705, 1053
BstDSI	CCRYGG	1 cut(s)	603
BstF5I	GGATG	8 cut(s)	450, 487, 613, 789, 889, 988, 1002, 1300
BstHHI	GCGC	2 cut(s)	538, 1025
BstMAI	GTCTC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	1087
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 535, 751, 760
BstNSI	RCATGY	1 cut(s)	1040
BstPAI	GACNNNNGTC	1 cut(s)	700
BstSCI	CCNGG	1 cut(s)	590
BstSFI	CTRYAG	1 cut(s)	960
BstV1I	GCAGC	5 cut(s)	303, 493, 738, 974, 1032
BstX2I	RGATCY	4 cut(s)	710, 892, 986, 1280
BstYI	RGATCY	4 cut(s)	710, 892, 986, 1280
BsuI	GTATCC	1 cut(s)	1216
BsuRI	GGCC	2 cut(s)	349, 843
BtgI	CCRYGG	1 cut(s)	603
BtgZI	GCGATG	2 cut(s)	214, 802
BtsCI	GGATG	8 cut(s)	450, 487, 613, 789, 889, 988, 1002, 1300
BtsIMutI	CAGTG	2 cut(s)	180, 948
Cac8I	GCNNGC	3 cut(s)	562, 960, 1038
CciI	TCATGA	2 cut(s)	726, 1177
CfoI	GCGC	2 cut(s)	538, 1025
Cfr10I	RCCGGY	2 cut(s)	209, 560
Cfr13I	GGNCC	3 cut(s)	695, 1076, 1089
CpoI	CGGWCCG	1 cut(s)	1089
Csp6I	GTAC	2 cut(s)	1043, 1122
CspI	CGGWCCG	1 cut(s)	1089
CviQI	GTAC	2 cut(s)	1043, 1122
DdeI	CTNAG	3 cut(s)	183, 705, 1053
DraI	TTTAAA	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	841
Eam1104I	CTCTTC	4 cut(s)	37, 84, 1147, 1262
EarI	CTCTTC	4 cut(s)	37, 84, 1147, 1262
EciI	GGCGGA	2 cut(s)	228, 1121
Ecl136II	GAGCTC	3 cut(s)	218, 776, 877
Eco130I	CCWWGG	2 cut(s)	6, 193
Eco24I	GRGCYC	3 cut(s)	220, 778, 879
Eco47I	GGWCC	3 cut(s)	695, 1076, 1089
Eco53kI	GAGCTC	3 cut(s)	218, 776, 877
Eco57I	CTGAAG	4 cut(s)	18, 486, 954, 1286
EcoICRI	GAGCTC	3 cut(s)	218, 776, 877
EcoT14I	CCWWGG	2 cut(s)	6, 193
EcoT38I	GRGCYC	3 cut(s)	220, 778, 879
ErhI	CCWWGG	2 cut(s)	6, 193
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	5 cut(s)	317, 507, 752, 963, 1021
FokI	GGATG	8 cut(s)	457, 474, 620, 796, 896, 989, 995, 1287
FriOI	GRGCYC	3 cut(s)	220, 778, 879
Fsp4HI	GCNGC	5 cut(s)	317, 507, 752, 963, 1021
FspBI	CTAG	4 cut(s)	51, 162, 194, 902
GlaI	GCGC	2 cut(s)	537, 1024
GluI	GCNGC	5 cut(s)	317, 507, 752, 963, 1021
HaeIII	GGCC	2 cut(s)	349, 843
HapII	CCGG	5 cut(s)	210, 365, 561, 591, 1331
HhaI	GCGC	2 cut(s)	538, 1025
Hin6I	GCGC	2 cut(s)	536, 1023
HinP1I	GCGC	2 cut(s)	536, 1023
HindIII	AAGCTT	1 cut(s)	1306
HinfI	GANTC	3 cut(s)	361, 437, 1253
HpaII	CCGG	5 cut(s)	210, 365, 561, 591, 1331
HphI	GGTGA	3 cut(s)	199, 263, 591
Hpy166II	GTNNAC	1 cut(s)	1317
Hpy188I	TCNGA	8 cut(s)	337, 378, 548, 706, 780, 982, 1014, 1084
Hpy188III	TCNNGA	9 cut(s)	68, 221, 582, 727, 872, 913, 1064, 1178, 1244
Hpy8I	GTNNAC	1 cut(s)	1317
HpyAV	CCTTC	5 cut(s)	5, 403, 483, 501, 510
HpyCH4III	ACNGT	7 cut(s)	275, 284, 308, 383, 722, 940, 1080
HpyCH4IV	ACGT	1 cut(s)	1319
HpyCH4V	TGCA	4 cut(s)	634, 962, 1020, 1096
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 535, 751, 760
HpyF3I	CTNAG	3 cut(s)	183, 705, 1053
HpySE526I	ACGT	1 cut(s)	1319
HspAI	GCGC	2 cut(s)	536, 1023
KroI	GCCGGC	1 cut(s)	560
KroNI	GCCGGC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	414
LguI	GCTCTTC	1 cut(s)	1262
LmnI	GCTCC	3 cut(s)	215, 557, 781
Lsp1109I	GCAGC	5 cut(s)	303, 493, 738, 974, 1032
LweI	GCATC	2 cut(s)	191, 774
MaeI	CTAG	4 cut(s)	51, 162, 194, 902
MaeII	ACGT	1 cut(s)	1319
MaeIII	GTNAC	1 cut(s)	1136
MboII	GAAGA	8 cut(s)	24, 71, 260, 468, 641, 960, 1134, 1279
MflI	RGATCY	4 cut(s)	710, 892, 986, 1280
MhlI	GDGCHC	3 cut(s)	220, 778, 879
MlsI	TGGCCA	1 cut(s)	843
MluCI	AATT	9 cut(s)	63, 84, 109, 120, 166, 1058, 1171, 1214, 1239
MluNI	TGGCCA	1 cut(s)	843
MmeI	TCCRAC	2 cut(s)	303, 673
Mox20I	TGGCCA	1 cut(s)	843
MroNI	GCCGGC	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	843
MseI	TTAA	6 cut(s)	290, 299, 344, 354, 615, 942
MslI	CAYNNNNRTG	1 cut(s)	1354
Msp20I	TGGCCA	1 cut(s)	843
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	5 cut(s)	210, 365, 561, 591, 1331
MspR9I	CCNGG	1 cut(s)	592
MwoI	GCNNNNNNNGC	4 cut(s)	210, 535, 751, 760
NaeI	GCCGGC	1 cut(s)	562
NciI	CCSGG	1 cut(s)	592
NgoMIV	GCCGGC	1 cut(s)	560
NlaIV	GGNNCC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	1040
OliI	CACNNNNGTG	1 cut(s)	1354
PaeI	GCATGC	1 cut(s)	1040
PagI	TCATGA	2 cut(s)	726, 1177
PciSI	GCTCTTC	1 cut(s)	1262
PdiI	GCCGGC	1 cut(s)	562
PfeI	GAWTC	3 cut(s)	361, 437, 1253
Pfl23II	CGTACG	1 cut(s)	1042
PflMI	CCANNNNNTGG	1 cut(s)	1131
PkrI	GCNGC	5 cut(s)	318, 508, 753, 964, 1022
Ple19I	CGATCG	1 cut(s)	1087
PshAI	GACNNNNGTC	1 cut(s)	700
Psp124BI	GAGCTC	3 cut(s)	220, 778, 879
PspLI	CGTACG	1 cut(s)	1042
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	3 cut(s)	695, 1076, 1089
PstI	CTGCAG	1 cut(s)	964
PsuI	RGATCY	4 cut(s)	710, 892, 986, 1280
PvuI	CGATCG	1 cut(s)	1087
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	2 cut(s)	1044, 1123
RsaNI	GTAC	2 cut(s)	1043, 1122
RseI	CAYNNNNRTG	1 cut(s)	1354
Rsr2I	CGGWCCG	1 cut(s)	1089
RsrII	CGGWCCG	1 cut(s)	1089
SacI	GAGCTC	3 cut(s)	220, 778, 879
SapI	GCTCTTC	1 cut(s)	1262
SaqAI	TTAA	6 cut(s)	290, 299, 344, 354, 615, 942
SatI	GCNGC	5 cut(s)	317, 507, 752, 963, 1021
Sau96I	GGNCC	3 cut(s)	695, 1076, 1089
ScrFI	CCNGG	1 cut(s)	592
SduI	GDGCHC	3 cut(s)	220, 778, 879
SfaNI	GCATC	2 cut(s)	191, 774
SfcI	CTRYAG	1 cut(s)	960
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	3 cut(s)	695, 1076, 1089
SmiMI	CAYNNNNRTG	1 cut(s)	1354
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
SpeI	ACTAGT	2 cut(s)	50, 161
SphI	GCATGC	1 cut(s)	1040
Sse9I	AATT	9 cut(s)	63, 84, 109, 120, 166, 1058, 1171, 1214, 1239
SsiI	CCGC	4 cut(s)	213, 564, 763, 1106
SspMI	CTAG	4 cut(s)	51, 162, 194, 902
SstI	GAGCTC	3 cut(s)	220, 778, 879
StyD4I	CCNGG	1 cut(s)	590
StyI	CCWWGG	2 cut(s)	6, 193
TaaI	ACNGT	7 cut(s)	275, 284, 308, 383, 722, 940, 1080
TaiI	ACGT	1 cut(s)	1322
TaqI	TCGA	3 cut(s)	581, 734, 934
TaqII	GACCGA	1 cut(s)	1077
TasI	AATT	9 cut(s)	63, 84, 109, 120, 166, 1058, 1171, 1214, 1239
TfiI	GAWTC	3 cut(s)	361, 437, 1253
Tru1I	TTAA	6 cut(s)	290, 299, 344, 354, 615, 942
Tru9I	TTAA	6 cut(s)	290, 299, 344, 354, 615, 942
TscAI	CASTG	2 cut(s)	187, 955
TseI	GCWGC	5 cut(s)	316, 506, 751, 962, 1020
TspDTI	ATGAA	8 cut(s)	10, 102, 254, 375, 641, 650, 809, 861
TspGWI	ACGGA	2 cut(s)	1043, 1081
TspRI	CASTG	2 cut(s)	187, 955
Van91I	CCANNNNNTGG	1 cut(s)	1131
VpaK11BI	GGWCC	3 cut(s)	695, 1076, 1089
XapI	RAATTY	1 cut(s)	1239
XceI	RCATGY	1 cut(s)	1040
XmaJI	CCTAGG	1 cut(s)	193
XspI	CTAG	4 cut(s)	51, 162, 194, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.