pycom17g27880

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002715
Physical Location & Seq
Forward (+)
25936135 .. 25937559
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1425 bp
ATGGAGATTTTACCTGCAATGCAAGGAAGCAATCTAAAAGGAGAGTTGCTGCTAAGTGCAGTGCTTCCTCTGCTGAAGCTCCTTTCAATGGCTGCCATTGGTTTTCTTCTTGCCCACCCAAAATACCAACTTGTCCCTAAACTCACTTTTACATTTCTCAGTAAGTTGGTATTTGCTGTCTTTTTACCCTGCTTAATCTTCACAAATCTAGGGCCATCAATTAGTCTAAAGAATTTGGTAAATTGGTGGTTCATTCCTGTTAATGTTGTAATAAGTACGGCGATCGGGTGTGTGTTGGGTTTGCTGGTTGCAGTGATTTGTAGGCCTCCACCTCAGTTTTTTCGATTGACCGTGATCATGACTGCGTTCGGAAACACGGGTAATCTCCCTCTTGCAATTGTTGCATCTGTTTGCCATAGTGATGATAACCCCTTCGGTACAGAAGATGACTGCACTGAGGCTGGTGTGGCATACGTTTCTTTTTCCCAATGGGTTTCTGTCATTCTTGTTTACACTCTTGTTTACCATATGATGGAGCCCACATTGGAGTCTGGTGTTTATGCAGTTGTGGGGGAAGAGGAGAATCATGAGATTGCGGAATTGGGTTCAGATCAGAATGGGAATGGGAATGGGAATGGGAATGGGAATGGGAATGGAGATGAAAGTGATCTTGCTAGGCCGCTTCTCGTTGAGGCTGAATGGCCTGGAATTGAAGATAAGGAAACTGAACATTGCAAGACACCCTTTATTGCAAGGCTTTTTAATAGCAGCAATGGTGTACTTTCACACACTAGTCCTTCGGAACTTGGTGAGGAGGAGGAGGAGGAGCAGGGAGGTTATCCGAGAAGTACCAAGCCTAGTAAGTGTCTGGCAGAGCCTAGGATCGTGAGGAAAATCAGATATGTTGCTTGGAGGACACCAATTCATGGCATTCTTCAGCCGCCAACAATTGCTTTTCTGTTGGCCATTGTCATTGGCATGATTCCCACATTGAAATCTCTTGTTTTTGATGATGACCAAGTCCTTTCGTTCCTCACAGACAGCTTGGAAATTGTAGCGGAGGCCATGGTGCCTTCGGCTGTGCTTGTTCTTGGAGGAATGCTAGCTGAAGGTCCCAACGAATCCAATCTCGGAATGAGAACTACGATTGGGATTATTGTTGCAAGGCTTTTGGTACTTCCTTTGATTGGGATTGGTGTGGTTCTATTGTCGGATAAATTGAATCTTTTGGTAGCCGATGATCAATTGTATCGGTTCGTTCTTTTGCTGCAATACACCACACCTTCTGCCATATTGTTAGGAGCAGTTGCAAGCTTGAGGGGTTATGCAGTCAGAGAGGCTTCTGCTCTCCTCTTCTGGCAGCATATTGTTGCCATCTTCTCCCTCTCGCTCTATATAATTGTCTACTTCTACATTCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

475

Amino Acids

51.59

Weight (kDa)

4.85

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 21 - 466 6.7e-88 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 1069
AccB7I CCANNNNNTGG 2 cut(s) 532, 926
AccI GTMKAC 1 cut(s) 1404
AciI CCGC 4 cut(s) 596, 680, 941, 1058
AclWI GGATC 1 cut(s) 890
AcoI YGGCCR 1 cut(s) 963
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 3 cut(s) 95, 920, 1128
AfaI GTAC 5 cut(s) 277, 439, 780, 850, 1176
AfiI CCNNNNNNNGG 4 cut(s) 88, 532, 926, 1187
AgsI TTSAA 4 cut(s) 87, 713, 994, 1222
AhlI ACTAGT 1 cut(s) 791
AjnI CCWGG 1 cut(s) 703
AluBI AGCT 4 cut(s) 79, 1044, 1106, 1314
AluI AGCT 4 cut(s) 79, 1044, 1106, 1314
AlwI GGATC 1 cut(s) 890
AoxI GGCC 6 cut(s) 212, 323, 677, 701, 963, 1062
ApeKI GCWGC 5 cut(s) 49, 92, 768, 1267, 1360
ApoI RAATTY 1 cut(s) 232
AspA2I CCTAGG 1 cut(s) 878
AspS9I GGNCC 2 cut(s) 212, 1112
AsuHPI GGTGA 1 cut(s) 821
AsuNHI GCTAGC 1 cut(s) 1102
AvaII GGWCC 1 cut(s) 1112
AvrII CCTAGG 1 cut(s) 878
BalI TGGCCA 1 cut(s) 965
BanI GGYRCC 1 cut(s) 1069
BanII GRGCYC 1 cut(s) 540
BbvI GCAGC 5 cut(s) 36, 79, 780, 1254, 1372
BccI CCATC 3 cut(s) 223, 526, 1382
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 1 cut(s) 705
BclI TGATCA 2 cut(s) 354, 1240
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 6 cut(s) 209, 675, 792, 858, 879, 1103
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 7 cut(s) 50, 93, 680, 769, 941, 1268, 1361
BlnI CCTAGG 1 cut(s) 878
BlsI GCNGC 7 cut(s) 51, 94, 681, 770, 942, 1269, 1362
Bme1390I CCNGG 1 cut(s) 705
Bme18I GGWCC 1 cut(s) 1112
BmgT120I GGNCC 2 cut(s) 212, 1112
BmiI GGNNCC 3 cut(s) 537, 1071, 1114
BmrFI CCNGG 1 cut(s) 705
BmsI GCATC 1 cut(s) 413
BmtI GCTAGC 1 cut(s) 1106
BpuEI CTTGAG 1 cut(s) 1336
BsaJI CCNNGG 2 cut(s) 878, 1065
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 532, 926, 1187
Bse3DI GCAATG 3 cut(s) 24, 730, 778
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 2 cut(s) 878, 1065
BseLI CCNNNNNNNGG 4 cut(s) 88, 532, 926, 1187
BseMI GCAATG 3 cut(s) 24, 730, 778
BseMII CTCAG 3 cut(s) 172, 347, 447
BseRI GAGGAG 7 cut(s) 593, 827, 830, 833, 836, 839, 1340
BseXI GCAGC 5 cut(s) 36, 79, 780, 1254, 1372
BsgI GTGCAG 2 cut(s) 78, 436
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 6 cut(s) 214, 325, 679, 703, 965, 1064
BshNI GGYRCC 1 cut(s) 1069
BsiEI CGRYCG 1 cut(s) 285
BslFI GGGAC 2 cut(s) 119, 1098
BslI CCNNNNNNNGG 4 cut(s) 88, 532, 926, 1187
BsmFI GGGAC 2 cut(s) 119, 1098
BsmI GAATGC 2 cut(s) 930, 1104
BsnI GGCC 6 cut(s) 214, 325, 679, 703, 965, 1064
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 6 cut(s) 282, 354, 610, 667, 882, 1240
Bsp19I CCATGG 1 cut(s) 1065
BspACI CCGC 4 cut(s) 596, 680, 941, 1058
BspANI GGCC 6 cut(s) 214, 325, 679, 703, 965, 1064
BspCNI CTCAG 3 cut(s) 171, 346, 448
BspHI TCATGA 2 cut(s) 357, 586
BspLI GGNNCC 3 cut(s) 537, 1071, 1114
BspMI ACCTGC 1 cut(s) 22
BspOI GCTAGC 1 cut(s) 1106
BspPI GGATC 1 cut(s) 890
BspT107I GGYRCC 1 cut(s) 1069
BsrDI GCAATG 3 cut(s) 24, 730, 778
BssECI CCNNGG 2 cut(s) 878, 1065
BssMI GATC 6 cut(s) 282, 354, 610, 667, 882, 1240
BssT1I CCWWGG 2 cut(s) 878, 1065
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 2 cut(s) 570, 1358
BstAPI GCANNNNNTGC 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 1104, 1312
BstDEI CTNAG 4 cut(s) 53, 158, 333, 456
BstDSI CCRYGG 1 cut(s) 1065
BstKTI GATC 6 cut(s) 285, 357, 613, 670, 885, 1243
BstMBI GATC 6 cut(s) 282, 354, 610, 667, 882, 1240
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 3 cut(s) 70, 401, 467
BstNI CCWGG 1 cut(s) 705
BstSCI CCNGG 1 cut(s) 703
BstV1I GCAGC 5 cut(s) 36, 79, 780, 1254, 1372
BsuRI GGCC 6 cut(s) 214, 325, 679, 703, 965, 1064
BtgI CCRYGG 1 cut(s) 1065
BtsI GCAGTG 2 cut(s) 66, 318
BtsIMutI CAGTG 3 cut(s) 66, 318, 453
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 1104, 1312
CciI TCATGA 2 cut(s) 357, 586
Cfr13I GGNCC 2 cut(s) 212, 1112
Csp6I GTAC 5 cut(s) 276, 438, 779, 849, 1175
CviAII CATG 5 cut(s) 358, 587, 926, 979, 1066
CviQI GTAC 5 cut(s) 276, 438, 779, 849, 1175
DdeI CTNAG 4 cut(s) 53, 158, 333, 456
DpnI GATC 6 cut(s) 284, 356, 612, 669, 884, 1242
DpnII GATC 6 cut(s) 282, 354, 610, 667, 882, 1240
EaeI YGGCCR 1 cut(s) 963
Eam1104I CTCTTC 2 cut(s) 570, 1358
EarI CTCTTC 2 cut(s) 570, 1358
Eco130I CCWWGG 2 cut(s) 878, 1065
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 1112
Eco57I CTGAAG 3 cut(s) 95, 920, 1128
EcoO109I RGGNCCY 1 cut(s) 1112
EcoRII CCWGG 1 cut(s) 703
EcoT14I CCWWGG 2 cut(s) 878, 1065
EcoT38I GRGCYC 1 cut(s) 540
ErhI CCWWGG 2 cut(s) 878, 1065
FaeI CATG 5 cut(s) 361, 590, 929, 982, 1069
FalI AAGNNNNNCTT 2 cut(s) 728, 760
FaqI GGGAC 2 cut(s) 119, 1098
FatI CATG 5 cut(s) 357, 586, 925, 978, 1065
FauNDI CATATG 1 cut(s) 528
FbaI TGATCA 2 cut(s) 354, 1240
FblI GTMKAC 1 cut(s) 1404
Fnu4HI GCNGC 7 cut(s) 50, 93, 680, 769, 941, 1268, 1361
FriOI GRGCYC 1 cut(s) 540
Fsp4HI GCNGC 7 cut(s) 50, 93, 680, 769, 941, 1268, 1361
FspBI CTAG 6 cut(s) 209, 675, 792, 858, 879, 1103
GluI GCNGC 7 cut(s) 50, 93, 680, 769, 941, 1268, 1361
HaeIII GGCC 6 cut(s) 214, 325, 679, 703, 965, 1064
Hin1II CATG 5 cut(s) 361, 590, 929, 982, 1069
HindIII AAGCTT 1 cut(s) 1312
HinfI GANTC 5 cut(s) 548, 583, 982, 1121, 1222
HphI GGTGA 1 cut(s) 821
Hpy166II GTNNAC 4 cut(s) 511, 523, 779, 1405
Hpy188I TCNGA 9 cut(s) 371, 610, 615, 802, 843, 899, 1133, 1213, 1334
Hpy188III TCNNGA 3 cut(s) 358, 587, 886
Hpy8I GTNNAC 4 cut(s) 511, 523, 779, 1405
HpyAV CCTTC 5 cut(s) 442, 807, 1083, 1103, 1293
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 474
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 401, 467
HpyF3I CTNAG 4 cut(s) 53, 158, 333, 456
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 5 cut(s) 361, 590, 929, 982, 1069
Ksp22I TGATCA 2 cut(s) 354, 1240
Kzo9I GATC 6 cut(s) 282, 354, 610, 667, 882, 1240
LmnI GCTCC 4 cut(s) 84, 535, 826, 1301
Lsp1109I GCAGC 5 cut(s) 36, 79, 780, 1254, 1372
LweI GCATC 1 cut(s) 413
MaeI CTAG 6 cut(s) 209, 675, 792, 858, 879, 1103
MaeII ACGT 1 cut(s) 474
MalI GATC 6 cut(s) 284, 356, 612, 669, 884, 1242
MboI GATC 6 cut(s) 282, 354, 610, 667, 882, 1240
MboII GAAGA 8 cut(s) 98, 190, 455, 587, 725, 926, 1345, 1369
MfeI CAATTG 3 cut(s) 396, 948, 1244
MhlI GDGCHC 1 cut(s) 540
MlsI TGGCCA 1 cut(s) 965
MluNI TGGCCA 1 cut(s) 965
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 1191
Mox20I TGGCCA 1 cut(s) 965
MscI TGGCCA 1 cut(s) 965
MseI TTAA 3 cut(s) 194, 261, 762
MslI CAYNNNNRTG 2 cut(s) 420, 977
Msp20I TGGCCA 1 cut(s) 965
MspR9I CCNGG 1 cut(s) 705
MunI CAATTG 3 cut(s) 396, 948, 1244
Mva1269I GAATGC 2 cut(s) 930, 1104
MvaI CCWGG 1 cut(s) 705
MwoI GCNNNNNNNGC 3 cut(s) 70, 401, 467
NcoI CCATGG 1 cut(s) 1065
NdeI CATATG 1 cut(s) 528
NdeII GATC 6 cut(s) 282, 354, 610, 667, 882, 1240
NheI GCTAGC 1 cut(s) 1102
NlaIII CATG 5 cut(s) 361, 590, 929, 982, 1069
NlaIV GGNNCC 3 cut(s) 537, 1071, 1114
PagI TCATGA 2 cut(s) 357, 586
PceI AGGCCT 1 cut(s) 325
PctI GAATGC 2 cut(s) 930, 1104
PfeI GAWTC 4 cut(s) 583, 982, 1121, 1222
PflFI GACNNNGTC 1 cut(s) 1019
PflMI CCANNNNNTGG 2 cut(s) 532, 926
PkrI GCNGC 7 cut(s) 51, 94, 681, 770, 942, 1269, 1362
Ple19I CGATCG 1 cut(s) 285
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PpuMI RGGWCCY 1 cut(s) 1112
Psp5II RGGWCCY 1 cut(s) 1112
Psp6I CCWGG 1 cut(s) 703
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 3 cut(s) 537, 1071, 1114
PspPI GGNCC 2 cut(s) 212, 1112
PspPPI RGGWCCY 1 cut(s) 1112
PsyI GACNNNGTC 1 cut(s) 1019
PvuI CGATCG 1 cut(s) 285
RsaI GTAC 5 cut(s) 277, 439, 780, 850, 1176
RsaNI GTAC 5 cut(s) 276, 438, 779, 849, 1175
RseI CAYNNNNRTG 2 cut(s) 420, 977
SaqAI TTAA 3 cut(s) 194, 261, 762
SatI GCNGC 7 cut(s) 50, 93, 680, 769, 941, 1268, 1361
Sau3AI GATC 6 cut(s) 282, 354, 610, 667, 882, 1240
Sau96I GGNCC 2 cut(s) 212, 1112
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 705
SduI GDGCHC 1 cut(s) 540
SfaNI GCATC 1 cut(s) 413
SinI GGWCC 1 cut(s) 1112
SmiMI CAYNNNNRTG 2 cut(s) 420, 977
SmlI CTYRAG 1 cut(s) 1315
SmoI CTYRAG 1 cut(s) 1315
SpeI ACTAGT 1 cut(s) 791
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 4 cut(s) 596, 680, 941, 1058
SspMI CTAG 6 cut(s) 209, 675, 792, 858, 879, 1103
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 703
StyI CCWWGG 2 cut(s) 878, 1065
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 477
TaqI TCGA 1 cut(s) 343
TatI WGTACW 1 cut(s) 778
TauI GCSGC 2 cut(s) 682, 943
TfiI GAWTC 4 cut(s) 583, 982, 1121, 1222
Tru1I TTAA 3 cut(s) 194, 261, 762
Tru9I TTAA 3 cut(s) 194, 261, 762
TscAI CASTG 3 cut(s) 66, 318, 460
TseI GCWGC 5 cut(s) 49, 92, 768, 1267, 1360
TspDTI ATGAA 3 cut(s) 241, 675, 914
TspRI CASTG 3 cut(s) 66, 318, 460
Tth111I GACNNNGTC 1 cut(s) 1019
Van91I CCANNNNNTGG 2 cut(s) 532, 926
VpaK11BI GGWCC 1 cut(s) 1112
XapI RAATTY 1 cut(s) 232
XmaJI CCTAGG 1 cut(s) 878
XmiI GTMKAC 1 cut(s) 1404
XspI CTAG 6 cut(s) 209, 675, 792, 858, 879, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.