Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_49

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Reverse (-)

48623 .. 49611

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGTGCGATCAAGGCAGCAGCTGGAGACGCGGTGCTGACCTTCTTGTGGATTTCCTGCGCATCCACGCTTGGCCTACTCACGACCCTTATCGCTACTGCCGTTGGCGTTCAAGCCCTCGCCTGGCCCCCTCTCTTCATCACCACCGCCCTTGTCTTCCTGCTTGTCTTCGTCTTCACCGTCATCGGAGACTCCTTGGGCGGCGCCAGCTTCAACCCCACGGGCACTGCCTCCTTTTACGCTGCCGGCCTTGGCTCCGACAACCTCTTCTCCATGGCCCTCCGCTTTCCTGCCCAGGCTTTGGGTGCTGTGGGTGGAGCACTGGCCATTAATGAGGTCATGCCGCAGCAATACAAGCACATGCTTGGAGGCCCTTCCTTAAAAGTTGACTCGCATACCGGCGCTATTGCTGAGGGGGTCTTGACTTTCATCATCTCCTTTCTTGTCCTCGTAATCATACTCAAGGGTCCTCGTAGCTCATTTCTCAAAATGTGGCTGCTCGCTGTGGTTACTGTTGCATTGGTTGTTACTGGTTCTGTGTATACCGGCCCTTCAATGAATCCTGCCAACGTAAGCAAACCATGTCCTTCTTTCTTTTCCGCCTATACCATATATATTCCTTGCACTGGTAGGAATCGTATTAAACTTAATACAACATCACCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012505 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

223

Amino Acids

23.09

Weight (kDa)

9.3

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	542
AccII	CGCG	1 cut(s)	32
AciI	CCGC	6 cut(s)	32, 147, 201, 283, 344, 600
AcoI	YGGCCR	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	204
AfiI	CCNNNNNNNGG	4 cut(s)	48, 123, 301, 626
AgsI	TTSAA	3 cut(s)	113, 214, 555
AjnI	CCWGG	2 cut(s)	122, 294
AluBI	AGCT	3 cut(s)	23, 210, 477
AluI	AGCT	3 cut(s)	23, 210, 477
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	21, 183
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	7 cut(s)	73, 125, 247, 276, 324, 370, 547
ApeKI	GCWGC	5 cut(s)	17, 20, 242, 346, 496
AseI	ATTAAT	1 cut(s)	330
AspLEI	GCGC	3 cut(s)	62, 206, 404
AspS9I	GGNCC	5 cut(s)	126, 277, 371, 467, 548
AsuHPI	GGTGA	3 cut(s)	133, 169, 651
AvaII	GGWCC	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	203
BbsI	GAAGAC	3 cut(s)	148, 160, 166
Bbv12I	GWGCWC	1 cut(s)	322
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	5 cut(s)	29, 32, 229, 358, 483
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	124, 296
BcoDI	GTCTC	2 cut(s)	21, 183
BfoI	RGCGCY	2 cut(s)	207, 405
BisI	GCNGC	7 cut(s)	18, 21, 202, 243, 344, 347, 497
BlsI	GCNGC	7 cut(s)	19, 22, 203, 244, 345, 348, 498
Bme1390I	CCNGG	2 cut(s)	124, 296
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	5 cut(s)	126, 277, 371, 467, 548
BmiI	GGNNCC	4 cut(s)	128, 205, 256, 468
BmrFI	CCNGG	2 cut(s)	124, 296
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	3 cut(s)	148, 160, 166
BpmI	CTGGAG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	5 cut(s)	195, 219, 250, 273, 294
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 254, 284
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 123, 301, 626
Bse118I	RCCGGY	3 cut(s)	245, 398, 545
Bse1I	ACTGG	3 cut(s)	327, 535, 631
BseBI	CCWGG	2 cut(s)	124, 296
BseDI	CCNNGG	5 cut(s)	195, 219, 250, 273, 294
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	4 cut(s)	48, 123, 301, 626
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	3 cut(s)	327, 535, 631
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	5 cut(s)	29, 32, 229, 358, 483
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	7 cut(s)	75, 127, 249, 278, 326, 372, 549
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	246, 399, 546
BslI	CCNNNNNNNGG	4 cut(s)	48, 123, 301, 626
BsmAI	GTCTC	2 cut(s)	21, 183
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	7 cut(s)	75, 127, 249, 278, 326, 372, 549
Bsp1286I	GDGCHC	2 cut(s)	227, 322
Bsp143I	GATC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	6 cut(s)	32, 147, 201, 283, 344, 600
BspANI	GGCC	7 cut(s)	75, 127, 249, 278, 326, 372, 549
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	4 cut(s)	128, 205, 256, 468
BspT107I	GGYRCC	1 cut(s)	203
BsrFI	RCCGGY	3 cut(s)	245, 398, 545
BsrI	ACTGG	3 cut(s)	327, 535, 631
BssAI	RCCGGY	3 cut(s)	245, 398, 545
BssECI	CCNNGG	5 cut(s)	195, 219, 250, 273, 294
BssMI	GATC	1 cut(s)	9
BssNAI	GTATAC	1 cut(s)	543
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	3 cut(s)	195, 250, 273
Bst1107I	GTATAC	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	124, 296
Bst4CI	ACNGT	2 cut(s)	181, 514
Bst6I	CTCTTC	2 cut(s)	140, 272
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	208, 247, 501
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	2 cut(s)	219, 273
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	2 cut(s)	207, 405
BstHHI	GCGC	3 cut(s)	62, 206, 404
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	2 cut(s)	21, 183
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 29, 207, 305, 355
BstNI	CCWGG	2 cut(s)	124, 296
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	122, 294
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	5 cut(s)	29, 32, 229, 358, 483
BstV2I	GAAGAC	3 cut(s)	148, 160, 166
BstZ17I	GTATAC	1 cut(s)	543
BsuRI	GGCC	7 cut(s)	75, 127, 249, 278, 326, 372, 549
BtgI	CCRYGG	2 cut(s)	219, 273
BtsCI	GGATG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	225, 320, 624
Cac8I	GCNNGC	3 cut(s)	208, 247, 501
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	3 cut(s)	62, 206, 404
Cfr10I	RCCGGY	3 cut(s)	245, 398, 545
Cfr13I	GGNCC	5 cut(s)	126, 277, 371, 467, 548
CseI	GACGC	1 cut(s)	38
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	4 cut(s)	274, 340, 361, 582
DdeI	CTNAG	1 cut(s)	411
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	140, 272
EarI	CTCTTC	2 cut(s)	140, 272
EciI	GGCGGA	1 cut(s)	589
Eco130I	CCWWGG	3 cut(s)	195, 250, 273
Eco47I	GGWCC	1 cut(s)	467
EcoO109I	RGGNCCY	2 cut(s)	371, 467
EcoRII	CCWGG	2 cut(s)	122, 294
EcoT14I	CCWWGG	3 cut(s)	195, 250, 273
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
ErhI	CCWWGG	3 cut(s)	195, 250, 273
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	4 cut(s)	277, 343, 364, 585
FatI	CATG	4 cut(s)	273, 339, 360, 581
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	7 cut(s)	18, 21, 202, 243, 344, 347, 497
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	7 cut(s)	18, 21, 202, 243, 344, 347, 497
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	3 cut(s)	61, 205, 403
GluI	GCNGC	7 cut(s)	18, 21, 202, 243, 344, 347, 497
GsuI	CTGGAG	1 cut(s)	45
HaeII	RGCGCY	2 cut(s)	207, 405
HaeIII	GGCC	7 cut(s)	75, 127, 249, 278, 326, 372, 549
HapII	CCGG	3 cut(s)	246, 399, 546
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	3 cut(s)	62, 206, 404
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	277, 343, 364, 585
Hin6I	GCGC	3 cut(s)	60, 204, 402
HinP1I	GCGC	3 cut(s)	60, 204, 402
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	4 cut(s)	191, 389, 559, 634
HpaII	CCGG	3 cut(s)	246, 399, 546
HphI	GGTGA	3 cut(s)	133, 169, 651
Hpy166II	GTNNAC	2 cut(s)	388, 543
Hpy188I	TCNGA	2 cut(s)	188, 259
Hpy188III	TCNNGA	2 cut(s)	82, 421
Hpy8I	GTNNAC	2 cut(s)	388, 543
HpyAV	CCTTC	4 cut(s)	52, 384, 561, 597
HpyCH4III	ACNGT	2 cut(s)	181, 514
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	2 cut(s)	518, 624
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 29, 207, 305, 355
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	570
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	277, 343, 364, 585
HspAI	GCGC	3 cut(s)	60, 204, 402
KasI	GGCGCC	1 cut(s)	203
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	260, 317
Lsp1109I	GCAGC	5 cut(s)	29, 32, 229, 358, 483
LweI	GCATC	1 cut(s)	71
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	508, 526
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	5 cut(s)	127, 148, 160, 166, 259
MhlI	GDGCHC	2 cut(s)	227, 322
MlsI	TGGCCA	1 cut(s)	326
MluNI	TGGCCA	1 cut(s)	326
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	185, 383
MmeI	TCCRAC	1 cut(s)	282
Mox20I	TGGCCA	1 cut(s)	326
MroNI	GCCGGC	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	4 cut(s)	330, 380, 642, 648
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	3 cut(s)	246, 399, 546
MspR9I	CCNGG	2 cut(s)	124, 296
MvaI	CCWGG	2 cut(s)	124, 296
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	14, 29, 207, 305, 355
NaeI	GCCGGC	1 cut(s)	247
NarI	GGCGCC	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	245
NlaIII	CATG	4 cut(s)	277, 343, 364, 585
NlaIV	GGNNCC	4 cut(s)	128, 205, 256, 468
NsbI	TGCGCA	1 cut(s)	61
NspI	RCATGY	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 177
PdiI	GCCGGC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	559, 634
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	7 cut(s)	19, 22, 203, 244, 345, 348, 498
PleI	GAGTC	2 cut(s)	185, 383
PluTI	GGCGCC	1 cut(s)	207
PpsI	GAGTC	2 cut(s)	185, 383
PpuMI	RGGWCCY	1 cut(s)	467
PshBI	ATTAAT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	122, 294
PspGI	CCWGG	2 cut(s)	122, 294
PspN4I	GGNNCC	4 cut(s)	128, 205, 256, 468
PspPI	GGNCC	5 cut(s)	126, 277, 371, 467, 548
PspPPI	RGGWCCY	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	330, 380, 642, 648
SatI	GCNGC	7 cut(s)	18, 21, 202, 243, 344, 347, 497
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	5 cut(s)	126, 277, 371, 467, 548
SchI	GAGTC	2 cut(s)	185, 383
ScrFI	CCNGG	2 cut(s)	124, 296
SduI	GDGCHC	2 cut(s)	227, 322
SetI	ASST	7 cut(s)	25, 44, 212, 267, 339, 479, 573
SfaNI	GCATC	1 cut(s)	71
SfoI	GGCGCC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
SsiI	CCGC	6 cut(s)	32, 147, 201, 283, 344, 600
SspDI	GGCGCC	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	122, 294
StyI	CCWWGG	3 cut(s)	195, 250, 273
TaaI	ACNGT	2 cut(s)	181, 514
TaiI	ACGT	1 cut(s)	573
TauI	GCSGC	2 cut(s)	204, 346
TfiI	GAWTC	2 cut(s)	559, 634
Tru1I	TTAA	4 cut(s)	330, 380, 642, 648
Tru9I	TTAA	4 cut(s)	330, 380, 642, 648
TscAI	CASTG	3 cut(s)	232, 327, 631
TseI	GCWGC	5 cut(s)	17, 20, 242, 346, 496
TspDTI	ATGAA	3 cut(s)	127, 418, 572
TspRI	CASTG	3 cut(s)	232, 327, 631
Van91I	CCANNNNNTGG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	467
VspI	ATTAAT	1 cut(s)	330
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.