RchiOBHm_Chr7g0223241

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
44894014 .. 44894349
336 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGGAGATTTCAAACGGCAATTCCGACTCCGAGGGCGATGAAATTTCTGAGAAATCGCCACTGCTGATGGAAGTGCAAGCGGTTGGTGAGGTGAAGAAATGTGGAGCGTTGGATGAGATGACCATTGACTGCTTTGTGCCTGAAGACGGGGATGGACTAGAAAAGCTCAGCCTTCAGCGTCTGGTTCGAGCTTCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.09

Weight (kDa)

4.13

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 42
AcuI CTGAAG 2 cut(s) 158, 162
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 12
AluBI AGCT 2 cut(s) 166, 191
AluI AGCT 2 cut(s) 166, 191
AlwNI CAGNNNCTG 1 cut(s) 181
ApoI RAATTY 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 98, 103
BbsI GAAGAC 1 cut(s) 150
BccI CCATC 2 cut(s) 61, 146
BceAI ACGGC 1 cut(s) 31
BfaI CTAG 1 cut(s) 158
BlpI GCTNAGC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 118, 157
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 39, 181
BslI CCNNNNNNNGG 1 cut(s) 146
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 40, 180
BssECI CCNNGG 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 48, 167
BstF5I GGATG 2 cut(s) 118, 157
BstV2I GAAGAC 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 118, 157
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 181
CseI GACGC 1 cut(s) 167
CviJI RGCY 4 cut(s) 166, 171, 191, 197
CviKI_1 RGCY 4 cut(s) 166, 171, 191, 197
DdeI CTNAG 2 cut(s) 48, 167
Eco57I CTGAAG 2 cut(s) 158, 162
FokI GGATG 2 cut(s) 125, 164
FspBI CTAG 1 cut(s) 158
HgaI GACGC 1 cut(s) 167
HinfI GANTC 1 cut(s) 26
HphI GGTGA 2 cut(s) 98, 103
Hpy188I TCNGA 3 cut(s) 25, 31, 49
HpyAV CCTTC 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 48, 167
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 2 cut(s) 153, 167
MaeI CTAG 1 cut(s) 158
MboII GAAGA 2 cut(s) 106, 155
MluCI AATT 2 cut(s) 19, 42
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 48, 90
MnlI CCTC 2 cut(s) 25, 82
MseI TTAA 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 181
SaqAI TTAA 1 cut(s) 199
SchI GAGTC 1 cut(s) 20
SetI ASST 3 cut(s) 93, 168, 193
SgeI CNNG 6 cut(s) 43, 89, 152, 160, 170, 194
Sse9I AATT 2 cut(s) 19, 42
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 158
TaqI TCGA 1 cut(s) 187
TasI AATT 2 cut(s) 19, 42
Tru1I TTAA 1 cut(s) 199
Tru9I TTAA 1 cut(s) 199
TscAI CASTG 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 1 cut(s) 66
XapI RAATTY 1 cut(s) 42
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.