Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004763

Physical Location & Seq

Genomic Coordinates Forward (+)

281102 .. 281801

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTTCACTTTGCTTTCGAGGAGCAGGAATCACACTGGAATTCTTTGGCCATCCTTTTTATAAATGAGTTTAATGTGGTGGAGACCTGCAGTGATGTAGATTCCAGAGTTGATATCTATCAAGTTGTAAGAGAAGGTTTCTCTCATCCTTCTATGAATGGGATAATGCTTTGGACTGCTCTACATGCTAATGGGTGCTACCAAATGTGCCTGACAGATTATAATCTTCAAAGTCTACCAGCCGGTGATGTGGTGGACAACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_10

Protein Analysis

88

Amino Acids

10.02

Weight (kDa)

4.26

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38300 AT4G38650
fragaria_vesca	FvH4_2g01510 FvH4_2g01510 FvH4_2g01510 FvH4_2g01510
malus_domestica	MD05G1119000.v1.1 MD10G1122000.v1.1
prunus_persica	Prupe.8G163400_v2.0.a1 Prupe.8G163400_v2.0.a1
pyrus_communis	pycom05g11310
rosa_chinensis	RchiOBHm_Chr6g0244121 RchiOBHm_Chr6g0244171
rosa_laevigata	RLG00000015377 RLG00000015378 RLG00000015379
rosa_multiflora	Rmu_co8265637.1_g000001 Rmu_sc0000638.1_g000001 Rmu_sc0000638.1_g000015 Rmu_sc0001455.1_g000031
rosa_roxburghii	Rroxscaffold_7G00216050
rosa_rugosa	Rorug05G0507600 Rorug05G0507700
rosa_samantha	Rh6AG022100 Rh6BG017800 Rh6CG014600 Rh6CG014700 Rh6CG014800 Rh6DG015800 Rh6DG015900
rosa_wichuraiana	Rw6G001820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	62, 222
Acc36I	ACCTGC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	50
BccI	CCATC	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	88
BfuAI	ACCTGC	1 cut(s)	95
BsaBI	GATNNNNATC	2 cut(s)	117, 222
BsaI	GGTCTC	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	41
Bse8I	GATNNNNATC	2 cut(s)	117, 222
BseGI	GGATG	2 cut(s)	51, 145
BseJI	GATNNNNATC	2 cut(s)	117, 222
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	92
BspMI	ACCTGC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	51, 145
BstMAI	GTCTC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	51, 145
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	34, 97
BveI	ACCTGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	242
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	2 cut(s)	50, 242
CviKI_1	RGCY	2 cut(s)	50, 242
EaeI	YGGCCR	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	115
FaeI	CATG	1 cut(s)	188
FaiI	YATR	4 cut(s)	62, 155, 186, 222
FatI	CATG	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	235
FokI	GGATG	2 cut(s)	38, 132
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	1 cut(s)	188
HinfI	GANTC	2 cut(s)	29, 101
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	236, 256
Hpy188III	TCNNGA	2 cut(s)	105, 264
Hpy8I	GTNNAC	2 cut(s)	236, 256
HpyAV	CCTTC	2 cut(s)	128, 159
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	188
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	7 cut(s)	11, 22, 100, 118, 224, 252, 256
MboII	GAAGA	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	1 cut(s)	40
MluNI	TGGCCA	1 cut(s)	50
MnlI	CCTC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	188
NspI	RCATGY	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	29, 101
PsiI	TTATAA	2 cut(s)	62, 222
PstI	CTGCAG	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	72
SetI	ASST	2 cut(s)	89, 139
SfcI	CTRYAG	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	18
TasI	AATT	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	29, 101
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	41, 97
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	41, 97
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.