RchiOBHm_Chr5g0001331

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005179
Physical Location & Seq
Reverse (-)
702978 .. 703760
783 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 783 bp
ATGGCAGATCAGGGTCCTCTTAATGTTGTTCCTTTAGCGGTCATTCTTCCGGACCCAAATTTAGACGTTGTTCCTTTAGCAGTCATTCTTCCGGGTCAAAACATCCTTCCTCCAAATAATGTTCTTCCTCCGGATTTCGATCATATCACCAACGTATGTTGCATCGGTGCCACCCAATCCAGCGTTATGCACATGGCAGTAATAGCAGAGCGATACCCAAGACTTAACGTCGTTGTGGCAGATTTCAATCAACAACTAATCGAAGACTGGAATGAGGGGAACATAGATTTTGAAGAGGAAGGTATGTTCGAGTTGTTAGAAAATCTTGCCGTTGCTAATCTACAGTTTGTCGATGATGTGAACGAAGCAATCGTAGATGCCCAGATGATTTTTATTGGAGTTGAAATACCTATCAAGGTAATTGGCTGTCGTGAAGGATTTGACCTAAGGCTATGGGTAAAAGCCATAAGGAGGATTGTGAAAGTGGCACCAACGTCAAAGATTATCGTAGAAAGATCGACCATGCCAATTGATTCTTTCGATATGACAACCACATTATTAGCCCGAAGACCTCCGCCTCCTTATGGCCAACCTGCTGTGCAATTTGCCGTTATGTCCAATCCGGACTTTTACTCTCCGGGCTCTAGACTTCAAGACCTGAGGAACCCAGATAGAGTTGTTATTGGGTTAAAATCAAATGTAGGGGACGTTCTTCCATTGCAACAGTTGTACATGGTTTTTAATTCAAAACCCAGAAGCAATCCGCGTAGTCCCAGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

260

Amino Acids

28.81

Weight (kDa)

4.67

Isoelectric Point (pI)

60.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 51 - 232 3.9e-32 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 601
AccB1I GGYRCC 2 cut(s) 167, 487
AccII CGCG 1 cut(s) 766
AccIII TCCGGA 3 cut(s) 49, 130, 622
AciI CCGC 3 cut(s) 38, 575, 764
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 1 cut(s) 731
AfiI CCNNNNNNNGG 2 cut(s) 471, 584
AgsI TTSAA 5 cut(s) 247, 293, 404, 653, 747
AhdI GACNNNNNGTC 1 cut(s) 227
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
Aor13HI TCCGGA 3 cut(s) 49, 130, 622
AoxI GGCC 1 cut(s) 586
ApoI RAATTY 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 14, 52
AsuC2I CCSGG 2 cut(s) 93, 639
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 2 cut(s) 14, 52
AxyI CCTNAGG 2 cut(s) 446, 659
BalI TGGCCA 1 cut(s) 588
BanI GGYRCC 2 cut(s) 167, 487
BanII GRGCYC 1 cut(s) 644
BbsI GAAGAC 2 cut(s) 270, 574
BceAI ACGGC 2 cut(s) 314, 593
BcnI CCSGG 2 cut(s) 93, 639
BfaI CTAG 1 cut(s) 645
BfmI CTRYAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 601
Bme1390I CCNGG 2 cut(s) 93, 639
Bme18I GGWCC 2 cut(s) 14, 52
BmeRI GACNNNNNGTC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 14, 52
BmiI GGNNCC 5 cut(s) 15, 54, 169, 489, 665
BmrFI CCNGG 2 cut(s) 93, 639
BmrI ACTGGG 1 cut(s) 768
BmsI GCATC 2 cut(s) 171, 367
BmuI ACTGGG 1 cut(s) 768
BpiI GAAGAC 2 cut(s) 270, 574
BpuMI CCSGG 2 cut(s) 93, 639
BsaBI GATNNNNATC 2 cut(s) 138, 246
BsaWI WCCGGW 3 cut(s) 49, 130, 622
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 584
Bse1I ACTGG 2 cut(s) 272, 774
Bse21I CCTNAGG 2 cut(s) 446, 659
Bse3DI GCAATG 1 cut(s) 716
Bse8I GATNNNNATC 2 cut(s) 138, 246
BseAI TCCGGA 3 cut(s) 49, 130, 622
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 2 cut(s) 138, 246
BseLI CCNNNNNNNGG 2 cut(s) 471, 584
BseMI GCAATG 1 cut(s) 716
BseMII CTCAG 1 cut(s) 650
BseNI ACTGG 2 cut(s) 272, 774
Bsh1236I CGCG 1 cut(s) 766
BshFI GGCC 1 cut(s) 588
BshNI GGYRCC 2 cut(s) 167, 487
BsiSI CCGG 5 cut(s) 50, 92, 131, 623, 638
BslFI GGGAC 2 cut(s) 719, 756
BslI CCNNNNNNNGG 2 cut(s) 471, 584
BsmFI GGGAC 2 cut(s) 719, 756
BsnI GGCC 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 644
Bsp13I TCCGGA 3 cut(s) 49, 130, 622
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 3 cut(s) 7, 139, 515
BspACI CCGC 3 cut(s) 38, 575, 764
BspANI GGCC 1 cut(s) 588
BspCNI CTCAG 1 cut(s) 651
BspEI TCCGGA 3 cut(s) 49, 130, 622
BspFNI CGCG 1 cut(s) 766
BspLI GGNNCC 5 cut(s) 15, 54, 169, 489, 665
BspMI ACCTGC 1 cut(s) 601
BspT107I GGYRCC 2 cut(s) 167, 487
BsrDI GCAATG 1 cut(s) 716
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 2 cut(s) 272, 774
BssMI GATC 3 cut(s) 7, 139, 515
Bst4CI ACNGT 2 cut(s) 345, 726
Bst6I CTCTTC 1 cut(s) 288
BstAUI TGTACA 1 cut(s) 729
BstDEI CTNAG 2 cut(s) 446, 659
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 766
BstKTI GATC 3 cut(s) 10, 142, 518
BstMBI GATC 3 cut(s) 7, 139, 515
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 91, 637
BstSFI CTRYAG 1 cut(s) 341
BstUI CGCG 1 cut(s) 766
BstV2I GAAGAC 2 cut(s) 270, 574
Bsu36I CCTNAGG 2 cut(s) 446, 659
BsuRI GGCC 1 cut(s) 588
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 781
BveI ACCTGC 1 cut(s) 601
Cfr13I GGNCC 2 cut(s) 14, 52
Csp6I GTAC 1 cut(s) 730
CviAII CATG 3 cut(s) 193, 523, 733
CviJI RGCY 6 cut(s) 426, 451, 464, 563, 588, 642
CviKI_1 RGCY 6 cut(s) 426, 451, 464, 563, 588, 642
CviQI GTAC 1 cut(s) 730
DdeI CTNAG 2 cut(s) 446, 659
DpnI GATC 3 cut(s) 9, 141, 517
DpnII GATC 3 cut(s) 7, 139, 515
DriI GACNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 288
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 644
Eco47I GGWCC 2 cut(s) 14, 52
Eco81I CCTNAGG 2 cut(s) 446, 659
EcoO109I RGGNCCY 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 644
FaeI CATG 3 cut(s) 196, 526, 736
FaqI GGGAC 2 cut(s) 719, 756
FatI CATG 3 cut(s) 192, 522, 732
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 644
FspBI CTAG 1 cut(s) 645
HaeIII GGCC 1 cut(s) 588
HapII CCGG 5 cut(s) 50, 92, 131, 623, 638
Hin1II CATG 3 cut(s) 196, 526, 736
HinfI GANTC 1 cut(s) 533
HpaII CCGG 5 cut(s) 50, 92, 131, 623, 638
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 361
Hpy188III TCNNGA 6 cut(s) 50, 131, 431, 623, 645, 653
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 116, 293, 428
HpyCH4III ACNGT 2 cut(s) 345, 726
HpyCH4IV ACGT 5 cut(s) 66, 153, 228, 494, 708
HpyCH4V TGCA 4 cut(s) 162, 190, 601, 721
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 446, 659
HpySE526I ACGT 5 cut(s) 66, 153, 228, 494, 708
Hsp92II CATG 3 cut(s) 196, 526, 736
Kpn2I TCCGGA 3 cut(s) 49, 130, 622
Kzo9I GATC 3 cut(s) 7, 139, 515
LweI GCATC 2 cut(s) 171, 367
MaeI CTAG 1 cut(s) 645
MaeII ACGT 5 cut(s) 66, 153, 228, 494, 708
MalI GATC 3 cut(s) 9, 141, 517
MboI GATC 3 cut(s) 7, 139, 515
MboII GAAGA 7 cut(s) 38, 80, 116, 275, 305, 579, 704
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 644
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 5 cut(s) 58, 420, 528, 602, 742
MluNI TGGCCA 1 cut(s) 588
MnlI CCTC 9 cut(s) 27, 120, 138, 268, 289, 465, 582, 588, 654
Mox20I TGGCCA 1 cut(s) 588
MroI TCCGGA 3 cut(s) 49, 130, 622
MscI TGGCCA 1 cut(s) 588
MseI TTAA 4 cut(s) 21, 225, 689, 741
Msp20I TGGCCA 1 cut(s) 588
MspI CCGG 5 cut(s) 50, 92, 131, 623, 638
MspR9I CCNGG 2 cut(s) 93, 639
MunI CAATTG 1 cut(s) 528
MvnI CGCG 1 cut(s) 766
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 2 cut(s) 93, 639
NdeII GATC 3 cut(s) 7, 139, 515
NlaIII CATG 3 cut(s) 196, 526, 736
NlaIV GGNNCC 5 cut(s) 15, 54, 169, 489, 665
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 1 cut(s) 533
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
PspN4I GGNNCC 5 cut(s) 15, 54, 169, 489, 665
PspPI GGNCC 2 cut(s) 14, 52
PspPPI RGGWCCY 1 cut(s) 14
PsrI GAACNNNNNNTAC 2 cut(s) 693, 725
RsaI GTAC 1 cut(s) 731
RsaNI GTAC 1 cut(s) 730
SaqAI TTAA 4 cut(s) 21, 225, 689, 741
Sau3AI GATC 3 cut(s) 7, 139, 515
Sau96I GGNCC 2 cut(s) 14, 52
ScrFI CCNGG 2 cut(s) 93, 639
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 2 cut(s) 171, 367
SfcI CTRYAG 1 cut(s) 341
SinI GGWCC 2 cut(s) 14, 52
Sse9I AATT 5 cut(s) 58, 420, 528, 602, 742
SsiI CCGC 3 cut(s) 38, 575, 764
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 2 cut(s) 91, 637
TaaI ACNGT 2 cut(s) 345, 726
TaiI ACGT 5 cut(s) 69, 156, 231, 497, 711
TaqI TCGA 6 cut(s) 138, 261, 309, 351, 518, 540
TasI AATT 5 cut(s) 58, 420, 528, 602, 742
TatI WGTACW 1 cut(s) 729
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 4 cut(s) 21, 225, 689, 741
Tru9I TTAA 4 cut(s) 21, 225, 689, 741
TscAI CASTG 1 cut(s) 781
TspRI CASTG 1 cut(s) 781
VpaK11BI GGWCC 2 cut(s) 14, 52
XapI RAATTY 1 cut(s) 58
XbaI TCTAGA 1 cut(s) 644
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.