Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001747

Physical Location & Seq

Genomic Coordinates Forward (+)

31118619 .. 31121399

Gene Structure 2781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGTGATGCAGCAGAGATGCAATCTCCAAAAGAAGAGATGGTGGCATGTGTGAGGGCACTGGAAGATGCTTTGCTTCCGTGCTTGCCTGCCCGAGAGCTCCAAGCGATTGATCGTTCTCCCCACCCTTCTCATCAGATTGATGTGGAGAGACATGCCAGAGACTTTATGGACGCTGCCAAAAAGCTTCAGCTGCATTTTCTTGGTCTGCAACGTGATGACCAGCCAACAAATGCTGAACAACTTAGAAAGGAGATTGCTGTGATGGAAGAGGAGTTGAATATAAAGACTGAGATCATCAAGAAGCATGAAAGGCTAATCCAGGGGTGGAAAAAGGAGCTAAAAGACCAATTGAACAAGCAAAATAATGAGCTTGAGAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:1900055 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.84

Weight (kDa)

5.56

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	17 - 114	9.2e-25	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52860
fragaria_vesca	FvH4_2g03920 FvH4_2g03920 FvH4_4g11510 FvH4_7g29690
malus_domestica	MD05G1096300.v1.1 MD10G1102600.v1.1
prunus_persica	Prupe.8G140700_v2.0.a1 Prupe.8G140700_v2.0.a1
pyrus_communis	pycom05g09510 pycom10g08840
rosa_chinensis	RchiOBHm_Chr4g0408421 RchiOBHm_Chr6g0252941 RchiOBHm_Chr6g0252971 RchiOBHm_Chr6g0264541
rosa_laevigata	RLG00000008652
rosa_multiflora	Rmu_sc0000578.1_g000013 Rmu_sc0002560.1_g000003 Rmu_sc0016103.1_g000003 Rmu_sc0016103.1_g000007 Rmu_sc0033269.1_g000001 Rmu_ssc0000173.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352890 Rroxscaffold_7G00212260
rosa_rugosa	Rorug04G0085600 Rorug04G0085700 Rorug05G0541700 Rorug05G0542300
rosa_samantha	Rh4AG150400 Rh4BG147700 Rh4CG157700 Rh4CG230800 Rh4DG143300 Rh6AG056000 Rh6AG056300 Rh6AG133100 Rh6BG050300 Rh6BG050600 Rh6BG130700 Rh6CG048700 Rh6CG128900 Rh6DG044300 Rh6DG116100 Rh7AG370500
rosa_wichuraiana	Rw0G009740 Rw4G012280 Rw6G005080 Rw6G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	280, 355
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	5 cut(s)	100, 187, 193, 340, 373
AluI	AGCT	5 cut(s)	100, 187, 193, 340, 373
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	145, 156
Ama87I	CYCGRG	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	11, 176, 193
AsuHPI	GGTGA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	23, 163, 180
BccI	CCATC	2 cut(s)	34, 259
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	145, 156
BisI	GCNGC	3 cut(s)	12, 177, 194
BlsI	GCNGC	3 cut(s)	13, 178, 195
Bme1390I	CCNGG	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	9, 58
BsaJI	CCNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	3 cut(s)	23, 163, 180
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	145, 156
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	61, 102
Bsp143I	GATC	2 cut(s)	112, 294
BspCNI	CTCAG	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	112, 294
Bst2UI	CCWGG	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	30, 264
BstC8I	GCNNGC	2 cut(s)	86, 90
BstDEI	CTNAG	2 cut(s)	245, 291
BstKTI	GATC	2 cut(s)	115, 297
BstMAI	GTCTC	2 cut(s)	145, 156
BstMBI	GATC	2 cut(s)	112, 294
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 313
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	2 cut(s)	51, 158
BstSCI	CCNGG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	3 cut(s)	23, 163, 180
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	2 cut(s)	86, 90
CseI	GACGC	1 cut(s)	182
CviAII	CATG	3 cut(s)	48, 155, 308
CviJI	RGCY	7 cut(s)	100, 187, 193, 226, 316, 340, 373
CviKI_1	RGCY	7 cut(s)	100, 187, 193, 226, 316, 340, 373
DdeI	CTNAG	2 cut(s)	245, 291
DpnI	GATC	2 cut(s)	114, 296
DpnII	GATC	2 cut(s)	112, 294
Eam1104I	CTCTTC	2 cut(s)	30, 264
EarI	CTCTTC	2 cut(s)	30, 264
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	3 cut(s)	51, 158, 311
FaiI	YATR	5 cut(s)	49, 156, 170, 284, 309
FatI	CATG	3 cut(s)	47, 154, 307
Fnu4HI	GCNGC	3 cut(s)	12, 177, 194
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	12, 177, 194
GluI	GCNGC	3 cut(s)	12, 177, 194
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	51, 158, 311
HindIII	AAGCTT	1 cut(s)	185
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	138, 373
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	4 cut(s)	11, 22, 196, 211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 313
HpyF3I	CTNAG	2 cut(s)	245, 291
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	3 cut(s)	51, 158, 311
Kzo9I	GATC	2 cut(s)	112, 294
LmnI	GCTCC	2 cut(s)	105, 337
LpnPI	CCDG	6 cut(s)	47, 102, 172, 236, 308, 335
Lsp1109I	GCAGC	3 cut(s)	23, 163, 180
LweI	GCATC	2 cut(s)	9, 58
MaeII	ACGT	1 cut(s)	214
MalI	GATC	2 cut(s)	114, 296
MboI	GATC	2 cut(s)	112, 294
MboII	GAAGA	3 cut(s)	47, 77, 281
MfeI	CAATTG	1 cut(s)	350
MhlI	GDGCHC	2 cut(s)	61, 102
MluCI	AATT	1 cut(s)	350
MnlI	CCTC	2 cut(s)	48, 265
MspA1I	CMGCKG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	323
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	193, 313
NdeII	GATC	2 cut(s)	112, 294
NlaIII	CATG	3 cut(s)	51, 158, 311
NspI	RCATGY	2 cut(s)	51, 158
PkrI	GCNGC	3 cut(s)	13, 178, 195
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	102
SatI	GCNGC	3 cut(s)	12, 177, 194
Sau3AI	GATC	2 cut(s)	112, 294
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	2 cut(s)	61, 102
SetI	ASST	7 cut(s)	102, 189, 195, 217, 342, 375, 384
SfaNI	GCATC	2 cut(s)	9, 58
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	321
TaiI	ACGT	1 cut(s)	217
TasI	AATT	1 cut(s)	350
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	3 cut(s)	11, 176, 193
TspDTI	ATGAA	1 cut(s)	324
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	66
XceI	RCATGY	2 cut(s)	51, 158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.