Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004563

Physical Location & Seq

Genomic Coordinates Reverse (-)

55409368 .. 55413178

Gene Structure 3811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGATACAATCTAATCATACTACATGTCTCTCCTCTGTTCTTCTCTTCTTTCTCCTTCTTCACGTCTCTGCAACCTCCGCTTCTGTCTATGACGACTTCGTTCAATGCCTCAACACCCACCCAAACTCCTCAGCCGCCAAGATAGTCATCCCCCAAAACAACCCTTCTTTCACTTCAACTCTCAGAGCCTACATCCGCAACGCTCGTTTCAACACCTCCACGACTCCCAAACCAGTCCTCATCCTCACGCCGACGACCGAGTCCCACGTCCAGGCCTCCGTCCTCTGCGCCGTTCAACTCAAACTCCAACTCAAAATCCGAAGCGGCGGACACGACTACGAGGGCATCTCATATGTCTCGTCCGAACCGACTTTCGTAATCCTCGACCTGTTCAACCTCCGGTCAATCGACGTCAACGCCGAGGACGCCACCGCGTGGGCCCAGGCCGGCGCGACTCTCGGAGAGTTGTACTATCGAATCTCCGAGAAGAGTAAAACGCTCGGGTTTGCCGCTGGGATTTGCCCCACTGTCGGTGTTGGTGGACACATCAGCGGTGGCGGTTATGGAAACTTGTTGAGGAAGTACGGCCTCGCCGTCGATAATGTATTGGATGCATTGATTGTTGATGTGAACGGGAAGCTTCTGGATAGAAAAGCAATGGGGGAGGATCTGTTTTGGGCTATCAGAGGCGGCGGTGGAGGAAGCTTTGGAGTGATCATATCCTATAAATTGAAGTTGGTTCCTGTGCCGGAAACGTTGACGGTTTTCCGGGTGATGAGTTACACAGAAGGTAATGCAACCGACGTCGTTTTGAGGTGGCAGGAGGTGGCGCCGACCACGGTGGATGATTTGTGGATGAGGATGTTGTTGCAGCCGGTGACTTCTCCGACCAAAAAGGGTGAGAAGACTGTTAGGATTTCGATTCTGGCCGAGTATTTAGGCAATGCTAATCAGTTAGTTTCTATTTTGGGTAAGGAGTTTCCTGAATTGGGTTTGAAGAAGGAGGACTGTTTGGAAATGAGTTGGATTGAGTCTGTGCTTTGGTGGAACGATGGTTCAACTCCCAATGTGACCAAACCAGAGGTTTTGCTTGATCGAAATCTCGACCAGGCGAGTTTCGGGAAGAGGAAGTCAGATTACGTGCAGACCCCGATTTCGAGAGAAGGGTTGGAGTCATTGTGGAAGAAGATGATTGAAGGCAAGACTGGTTTGTTGTTCAATCCATATGGTGGGAAAATGGCTCAAATTTCGGCCTCCGATGCGCCTTTTCCTCATCGGGCCGGGAATTTGTTTAAGATTCAGTACTCGGTGAATTGGGACGTTGCAGGAGAGGAAGCAACTAATGAGTATTTGAACCAAAGTAGGGTGCTTTACAGTTTTATGACCCCATTTGTGTCCAAGAATCCAAGGAGTGCTTTCTTGAACTATAGGGACCTTGACATTGGTGTCAACAATTTTGGGAAGAATAGCTTTGAACAAGGGAAGGTGTATGGATTGATGTACTTCAACGACAATTTCGATAGGTTGGTGAAGGTGAAGACTGCTGTTGATCCAGGAAATTTCTTCAGGAATGAGCAGAGTATCCCACCTCTTCCAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

533

Amino Acids

58.94

Weight (kDa)

7.05

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	80 - 215	2.4e-25	FAD binding domain
BBE	PF08031	472 - 529	1.8e-17	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01980 AT1G11770 AT4G20830 AT4G20830 AT4G20840
fragaria_vesca	FvH4_3g10960 FvH4_3g10990
malus_domestica	MD05G1267600.v1.1 MD10G1244200.v1.1
prunus_persica	Prupe.1G438500_v2.0.a1 Prupe.3G111900_v2.0.a1 Prupe.3G112100_v2.0.a1 Prupe.4G098300_v2.0.a1 Prupe.4G157300_v2.0.a1
pyrus_communis	pycom10g20420
rosa_chinensis	RchiOBHm_Chr4g0431091 RchiOBHm_Chr5g0017701
rosa_laevigata	RLG00000006926 RLG00000032306 RLG00000032307
rosa_multiflora	Rmu_sc0003415.1_g000004 Rmu_sc0003415.1_g000005 Rmu_sc0003592.1_g000010 Rmu_sc0010203.1_g000010
rosa_roxburghii	Rroxscaffold_1G00059780 Rroxscaffold_1G00059790
rosa_rugosa	Rorug05G0037400 Rorug05G0037400
rosa_wichuraiana	Rw4G026460 Rw5G011360 Rw5G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	259, 1445
AatII	GACGTC	2 cut(s)	414, 807
AccB1I	GGYRCC	1 cut(s)	829
AccB7I	CCANNNNNTGG	2 cut(s)	435, 1229
AccII	CGCG	2 cut(s)	434, 452
AclI	AACGTT	1 cut(s)	755
AclWI	GGATC	2 cut(s)	675, 1544
AcoI	YGGCCR	1 cut(s)	927
AcsI	RAATTY	3 cut(s)	1245, 1285, 1558
AcuI	CTGAAG	1 cut(s)	1549
AcyI	GRCGYC	4 cut(s)	411, 426, 804, 830
AdeI	CACNNNGTG	1 cut(s)	435
AfaI	GTAC	4 cut(s)	470, 584, 1304, 1502
AfiI	CCNNNNNNNGG	6 cut(s)	271, 435, 530, 989, 1229, 1363
AflIII	ACRYGT	1 cut(s)	23
AjiI	CACGTC	2 cut(s)	64, 268
AjnI	CCWGG	4 cut(s)	270, 441, 1107, 1552
AloI	GAACNNNNNNTCC	2 cut(s)	1039, 1071
AluBI	AGCT	3 cut(s)	640, 705, 1470
AluI	AGCT	3 cut(s)	640, 705, 1470
Alw26I	GTCTC	3 cut(s)	32, 70, 361
AlwI	GGATC	2 cut(s)	675, 1544
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	7 cut(s)	273, 438, 444, 586, 927, 1251, 1278
ApaI	GGGCCC	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	871
ApoI	RAATTY	3 cut(s)	1245, 1285, 1558
ArsI	GACNNNNNNTTYG	2 cut(s)	1138, 1170
AspLEI	GCGC	4 cut(s)	290, 452, 832, 1264
AspS9I	GGNCC	4 cut(s)	438, 439, 1278, 1432
AsuC2I	CCSGG	2 cut(s)	770, 1282
AsuHPI	GGTGA	6 cut(s)	784, 889, 911, 1321, 1540, 1546
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	1432
BaeGI	GKGCMC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	442
BarI	GAAGNNNNNNTAC	2 cut(s)	1121, 1153
BbsI	GAAGAC	2 cut(s)	911, 1544
BbvCI	CCTCAGC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	883
BccI	CCATC	1 cut(s)	1046
BceAI	ACGGC	3 cut(s)	275, 578, 601
BciT130I	CCWGG	4 cut(s)	272, 443, 1109, 1554
BciVI	GTATCC	1 cut(s)	1592
BclI	TGATCA	1 cut(s)	714
BcnI	CCSGG	2 cut(s)	770, 1282
BcoDI	GTCTC	3 cut(s)	32, 70, 361
BfmI	CTRYAG	1 cut(s)	1426
BfoI	RGCGCY	1 cut(s)	833
BfuI	GTATCC	1 cut(s)	1592
BisI	GCNGC	5 cut(s)	135, 325, 510, 691, 872
BlsI	GCNGC	5 cut(s)	136, 326, 511, 692, 873
BmcAI	AGTACT	1 cut(s)	1304
Bme1390I	CCNGG	6 cut(s)	272, 443, 770, 1109, 1282, 1554
Bme18I	GGWCC	1 cut(s)	1432
BmeT110I	CYCGRG	1 cut(s)	500
BmgBI	CACGTC	2 cut(s)	64, 268
BmgT120I	GGNCC	4 cut(s)	438, 439, 1278, 1432
BmiI	GGNNCC	4 cut(s)	440, 741, 831, 1433
BmrFI	CCNGG	6 cut(s)	272, 443, 770, 1109, 1282, 1554
BmsI	GCATC	3 cut(s)	354, 601, 1249
BpiI	GAAGAC	2 cut(s)	911, 1544
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
Bpu10I	CCTNAGC	1 cut(s)	130
BpuMI	CCSGG	2 cut(s)	770, 1282
BsaAI	YACGTR	1 cut(s)	1141
BsaBI	GATNNNNATC	2 cut(s)	146, 1098
BsaHI	GRCGYC	4 cut(s)	411, 426, 804, 830
BsaJI	CCNNGG	4 cut(s)	420, 441, 837, 1406
BsaWI	WCCGGW	1 cut(s)	399
BsaXI	ACNNNNNCTCC	8 cut(s)	110, 140, 288, 318, 656, 686, 1163, 1193
Bsc4I	CCNNNNNNNGG	6 cut(s)	271, 435, 530, 989, 1229, 1363
Bse118I	RCCGGY	2 cut(s)	446, 874
Bse1I	ACTGG	2 cut(s)	233, 1210
Bse3DI	GCAATG	2 cut(s)	663, 949
Bse8I	GATNNNNATC	2 cut(s)	146, 1098
BseBI	CCWGG	4 cut(s)	272, 443, 1109, 1554
BseDI	CCNNGG	4 cut(s)	420, 441, 837, 1406
BseGI	GGATG	7 cut(s)	147, 192, 240, 616, 850, 861, 867
BseJI	GATNNNNATC	2 cut(s)	146, 1098
BseLI	CCNNNNNNNGG	6 cut(s)	271, 435, 530, 989, 1229, 1363
BseMI	GCAATG	2 cut(s)	663, 949
BseMII	CTCAG	2 cut(s)	144, 196
BseNI	ACTGG	2 cut(s)	233, 1210
BseRI	GAGGAG	2 cut(s)	22, 118
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	883
BseYI	CCCAGC	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	1163
Bsh1236I	CGCG	2 cut(s)	434, 452
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	7 cut(s)	275, 440, 446, 588, 929, 1253, 1280
BshNI	GGYRCC	1 cut(s)	829
BsiEI	CGRYCG	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	6 cut(s)	400, 447, 749, 769, 875, 1281
BslFI	GGGAC	3 cut(s)	247, 1331, 1445
BslI	CCNNNNNNNGG	6 cut(s)	271, 435, 530, 989, 1229, 1363
BsmAI	GTCTC	3 cut(s)	32, 70, 361
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	3 cut(s)	247, 1331, 1445
BsnI	GGCC	7 cut(s)	275, 440, 446, 588, 929, 1253, 1280
BsoBI	CYCGRG	1 cut(s)	500
Bsp120I	GGGCCC	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	4 cut(s)	667, 714, 1093, 1549
BspANI	GGCC	7 cut(s)	275, 440, 446, 588, 929, 1253, 1280
BspCNI	CTCAG	2 cut(s)	143, 195
BspFNI	CGCG	2 cut(s)	434, 452
BspLI	GGNNCC	4 cut(s)	440, 741, 831, 1433
BspPI	GGATC	2 cut(s)	675, 1544
BspT107I	GGYRCC	1 cut(s)	829
BsrDI	GCAATG	2 cut(s)	663, 949
BsrFI	RCCGGY	2 cut(s)	446, 874
BsrI	ACTGG	2 cut(s)	233, 1210
BssAI	RCCGGY	2 cut(s)	446, 874
BssECI	CCNNGG	4 cut(s)	420, 441, 837, 1406
BssMI	GATC	4 cut(s)	667, 714, 1093, 1549
BssNI	GRCGYC	4 cut(s)	411, 426, 804, 830
BssT1I	CCWWGG	1 cut(s)	1406
Bst2UI	CCWGG	4 cut(s)	272, 443, 1109, 1554
Bst4CI	ACNGT	6 cut(s)	529, 763, 841, 910, 1010, 1376
Bst6I	CTCTTC	4 cut(s)	50, 482, 1118, 1596
BstACI	GRCGYC	4 cut(s)	411, 426, 804, 830
BstBAI	YACGTR	1 cut(s)	1141
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	130, 182
BstDSI	CCRYGG	1 cut(s)	837
BstF5I	GGATG	7 cut(s)	147, 192, 240, 616, 850, 861, 867
BstFNI	CGCG	2 cut(s)	434, 452
BstH2I	RGCGCY	1 cut(s)	833
BstHHI	GCGC	4 cut(s)	290, 452, 832, 1264
BstKTI	GATC	4 cut(s)	670, 717, 1096, 1552
BstMAI	GTCTC	3 cut(s)	32, 70, 361
BstMBI	GATC	4 cut(s)	667, 714, 1093, 1549
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 425, 1259
BstNI	CCWGG	4 cut(s)	272, 443, 1109, 1554
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	6 cut(s)	270, 441, 768, 1107, 1280, 1552
BstSFI	CTRYAG	1 cut(s)	1426
BstSLI	GKGCMC	1 cut(s)	442
BstUI	CGCG	2 cut(s)	434, 452
BstV1I	GCAGC	1 cut(s)	883
BstV2I	GAAGAC	2 cut(s)	911, 1544
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BsuI	GTATCC	1 cut(s)	1592
BsuRI	GGCC	7 cut(s)	275, 440, 446, 588, 929, 1253, 1280
BtgI	CCRYGG	1 cut(s)	837
BtrI	CACGTC	2 cut(s)	64, 268
BtsCI	GGATG	7 cut(s)	147, 192, 240, 616, 850, 861, 867
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	1 cut(s)	448
CfoI	GCGC	4 cut(s)	290, 452, 832, 1264
Cfr10I	RCCGGY	2 cut(s)	446, 874
Cfr13I	GGNCC	4 cut(s)	438, 439, 1278, 1432
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	4 cut(s)	469, 583, 1303, 1501
CviAII	CATG	1 cut(s)	24
CviQI	GTAC	4 cut(s)	469, 583, 1303, 1501
DdeI	CTNAG	2 cut(s)	130, 182
DinI	GGCGCC	1 cut(s)	831
DpnI	GATC	4 cut(s)	669, 716, 1095, 1551
DpnII	GATC	4 cut(s)	667, 714, 1093, 1549
DraIII	CACNNNGTG	1 cut(s)	435
DrdI	GACNNNNNNGTC	2 cut(s)	259, 1445
DseDI	GACNNNNNNGTC	2 cut(s)	259, 1445
EaeI	YGGCCR	1 cut(s)	927
Eam1104I	CTCTTC	4 cut(s)	50, 482, 1118, 1596
EarI	CTCTTC	4 cut(s)	50, 482, 1118, 1596
EciI	GGCGGA	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	1406
Eco147I	AGGCCT	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	1432
Eco57I	CTGAAG	1 cut(s)	1549
Eco88I	CYCGRG	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	1432
EcoRII	CCWGG	4 cut(s)	270, 441, 1107, 1552
EcoT14I	CCWWGG	1 cut(s)	1406
EcoT22I	ATGCAT	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	442
EgeI	GGCGCC	1 cut(s)	831
EheI	GGCGCC	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	1406
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	1 cut(s)	27
FalI	AAGNNNNNCTT	4 cut(s)	1399, 1431, 1454, 1486
FaqI	GGGAC	3 cut(s)	247, 1331, 1445
FatI	CATG	1 cut(s)	23
FauNDI	CATATG	2 cut(s)	352, 1225
FbaI	TGATCA	1 cut(s)	714
Fnu4HI	GCNGC	5 cut(s)	135, 325, 510, 691, 872
FokI	GGATG	7 cut(s)	134, 179, 227, 623, 857, 868, 874
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	5 cut(s)	135, 325, 510, 691, 872
GlaI	GCGC	4 cut(s)	289, 451, 831, 1263
GluI	GCNGC	5 cut(s)	135, 325, 510, 691, 872
GsaI	CCCAGC	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	833
HaeIII	GGCC	7 cut(s)	275, 440, 446, 588, 929, 1253, 1280
HapII	CCGG	6 cut(s)	400, 447, 749, 769, 875, 1281
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	4 cut(s)	290, 452, 832, 1264
Hin1I	GRCGYC	4 cut(s)	411, 426, 804, 830
Hin1II	CATG	1 cut(s)	27
Hin6I	GCGC	4 cut(s)	288, 450, 830, 1262
HinP1I	GCGC	4 cut(s)	288, 450, 830, 1262
HincII	GTYRAC	3 cut(s)	415, 759, 1450
HindII	GTYRAC	3 cut(s)	415, 759, 1450
HindIII	AAGCTT	2 cut(s)	638, 703
HinfI	GANTC	9 cut(s)	223, 260, 454, 477, 922, 1031, 1172, 1297, 1402
HpaII	CCGG	6 cut(s)	400, 447, 749, 769, 875, 1281
HphI	GGTGA	6 cut(s)	784, 889, 911, 1321, 1540, 1546
Hpy166II	GTNNAC	5 cut(s)	415, 542, 631, 759, 1450
Hpy188I	TCNGA	9 cut(s)	185, 320, 364, 461, 484, 686, 888, 1135, 1258
Hpy188III	TCNNGA	7 cut(s)	644, 983, 1103, 1120, 1158, 1420, 1567
Hpy8I	GTNNAC	5 cut(s)	415, 542, 631, 759, 1450
Hpy99I	CGWCG	5 cut(s)	256, 413, 599, 806, 809
HpyAV	CCTTC	8 cut(s)	65, 174, 782, 994, 1157, 1190, 1477, 1525
HpyCH4III	ACNGT	6 cut(s)	529, 763, 841, 910, 1010, 1376
HpyCH4IV	ACGT	8 cut(s)	63, 267, 411, 755, 804, 1140, 1320, 1598
HpyCH4V	TGCA	6 cut(s)	71, 614, 797, 871, 1144, 1325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 425, 1259
HpyF3I	CTNAG	2 cut(s)	130, 182
HpySE526I	ACGT	8 cut(s)	63, 267, 411, 755, 804, 1140, 1320, 1598
Hsp92I	GRCGYC	4 cut(s)	411, 426, 804, 830
Hsp92II	CATG	1 cut(s)	27
HspAI	GCGC	4 cut(s)	288, 450, 830, 1262
KasI	GGCGCC	1 cut(s)	829
KroI	GCCGGC	1 cut(s)	446
KroNI	GCCGGC	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	714
Kzo9I	GATC	4 cut(s)	667, 714, 1093, 1549
Lsp1109I	GCAGC	1 cut(s)	883
LweI	GCATC	3 cut(s)	354, 601, 1249
MaeII	ACGT	8 cut(s)	63, 267, 411, 755, 804, 1140, 1320, 1598
MaeIII	GTNAC	3 cut(s)	779, 877, 1069
MalI	GATC	4 cut(s)	669, 716, 1095, 1551
MboI	GATC	4 cut(s)	667, 714, 1093, 1549
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	8 cut(s)	728, 986, 1245, 1285, 1312, 1453, 1513, 1558
Mly113I	GGCGCC	1 cut(s)	830
MlyI	GAGTC	5 cut(s)	217, 269, 448, 1040, 1181
MmeI	TCCRAC	4 cut(s)	331, 911, 1004, 1149
Mph1103I	ATGCAT	1 cut(s)	616
MroNI	GCCGGC	1 cut(s)	446
MseI	TTAA	1 cut(s)	1293
MspA1I	CMGCKG	2 cut(s)	512, 552
MspI	CCGG	6 cut(s)	400, 447, 749, 769, 875, 1281
MspR9I	CCNGG	6 cut(s)	272, 443, 770, 1109, 1282, 1554
MvaI	CCWGG	4 cut(s)	272, 443, 1109, 1554
MvnI	CGCG	2 cut(s)	434, 452
MwoI	GCNNNNNNNGC	3 cut(s)	77, 425, 1259
NaeI	GCCGGC	1 cut(s)	448
NarI	GGCGCC	1 cut(s)	830
NciI	CCSGG	2 cut(s)	770, 1282
NdeI	CATATG	2 cut(s)	352, 1225
NdeII	GATC	4 cut(s)	667, 714, 1093, 1549
NgoMIV	GCCGGC	1 cut(s)	446
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	4 cut(s)	440, 741, 831, 1433
NmeAIII	GCCGAG	2 cut(s)	445, 955
NmuCI	GTSAC	2 cut(s)	877, 1069
NsiI	ATGCAT	1 cut(s)	616
NspI	RCATGY	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	275
PciI	ACATGT	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	5 cut(s)	365, 381, 417, 591, 1515
PdiI	GCCGGC	1 cut(s)	448
PfeI	GAWTC	4 cut(s)	477, 922, 1297, 1402
PflFI	GACNNNGTC	1 cut(s)	259
PflMI	CCANNNNNTGG	2 cut(s)	435, 1229
PfoI	TCCNGGA	1 cut(s)	1552
PkrI	GCNGC	5 cut(s)	136, 326, 511, 692, 873
PleI	GAGTC	5 cut(s)	217, 268, 448, 1039, 1180
PluTI	GGCGCC	1 cut(s)	833
PpsI	GAGTC	5 cut(s)	217, 268, 448, 1039, 1180
Ppu21I	YACGTR	1 cut(s)	1141
PpuMI	RGGWCCY	1 cut(s)	1432
PscI	ACATGT	1 cut(s)	23
Psp1406I	AACGTT	1 cut(s)	755
Psp5II	RGGWCCY	1 cut(s)	1432
Psp6I	CCWGG	4 cut(s)	270, 441, 1107, 1552
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	4 cut(s)	270, 441, 1107, 1552
PspN4I	GGNNCC	4 cut(s)	440, 741, 831, 1433
PspOMI	GGGCCC	1 cut(s)	438
PspPI	GGNCC	4 cut(s)	438, 439, 1278, 1432
PspPPI	RGGWCCY	1 cut(s)	1432
PsuI	RGATCY	1 cut(s)	667
PsyI	GACNNNGTC	1 cut(s)	259
RsaI	GTAC	4 cut(s)	470, 584, 1304, 1502
RsaNI	GTAC	4 cut(s)	469, 583, 1303, 1501
SaqAI	TTAA	1 cut(s)	1293
SatI	GCNGC	5 cut(s)	135, 325, 510, 691, 872
Sau3AI	GATC	4 cut(s)	667, 714, 1093, 1549
Sau96I	GGNCC	4 cut(s)	438, 439, 1278, 1432
ScaI	AGTACT	1 cut(s)	1304
SchI	GAGTC	5 cut(s)	217, 269, 448, 1040, 1181
ScrFI	CCNGG	6 cut(s)	272, 443, 770, 1109, 1282, 1554
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	3 cut(s)	354, 601, 1249
SfcI	CTRYAG	1 cut(s)	1426
SfoI	GGCGCC	1 cut(s)	831
SinI	GGWCC	1 cut(s)	1432
Sse9I	AATT	8 cut(s)	728, 986, 1245, 1285, 1312, 1453, 1513, 1558
SseBI	AGGCCT	1 cut(s)	275
SspDI	GGCGCC	1 cut(s)	829
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	6 cut(s)	270, 441, 768, 1107, 1280, 1552
StyI	CCWWGG	1 cut(s)	1406
TaaI	ACNGT	6 cut(s)	529, 763, 841, 910, 1010, 1376
TaiI	ACGT	8 cut(s)	66, 270, 414, 758, 807, 1143, 1323, 1601
TaqI	TCGA	9 cut(s)	384, 408, 475, 597, 920, 1096, 1104, 1157, 1518
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	8 cut(s)	728, 986, 1245, 1285, 1312, 1453, 1513, 1558
TatI	WGTACW	3 cut(s)	468, 1302, 1500
TauI	GCSGC	4 cut(s)	137, 327, 512, 693
TfiI	GAWTC	4 cut(s)	477, 922, 1297, 1402
Tru1I	TTAA	1 cut(s)	1293
Tru9I	TTAA	1 cut(s)	1293
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	2 cut(s)	877, 1069
TseI	GCWGC	1 cut(s)	871
Tsp45I	GTSAC	2 cut(s)	877, 1069
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	532
Tth111I	GACNNNGTC	1 cut(s)	259
Van91I	CCANNNNNTGG	2 cut(s)	435, 1229
VpaK11BI	GGWCC	1 cut(s)	1432
XapI	RAATTY	3 cut(s)	1245, 1285, 1558
XceI	RCATGY	1 cut(s)	27
ZraI	GACGTC	2 cut(s)	412, 805
ZrmI	AGTACT	1 cut(s)	1304
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.