RchiOBHm_Chr3g0452711

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
3280482 .. 3292802
12321 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1296 bp
ATGTCTTTTGTATCTCTTTTTCTTGTGGTCATTTTCATGATATTTGCCGCCGGTGGTACTTCTCCACCGATGGCCCAAGCTCAGAGTTTCACTATATCAACGAGATTGACCAACACGAGTACTAGTGCTTTCAGACACAAACTTCGTCAAAAGCTACTATCCCAAACCACAGAAACTCGACCCCTTAATCTTGATCCAGGCACGGTCTTCCCTGCTCTCCCGTCCGGCATGGTCTACGTAAGCGCCCACATTGGGACTCCTCCACTCACCATCAACCTTGCTTTGGACACCCTCTTTCCATTCACTTGGGTTCAGTCAGTGGATTGCCAAAAATGCTTCAACGTTTCACCCCCATTTTCCAACTTTGACCCCAAGAAATCCACCACTTTTCAACTTCTCCCTCCAACCAACACCACCATCTGCTCGCCACCTCTCGCTCATCTATCGGCCGGTGCTGGATCGTCGTGTGTTTACGACGCTGGGTATAGCAGGGGCATATATGGAATCGACGAGTTCCATTTGTTGTCTCCCCTGTCCTCCTCCTCCTCCTCCTCCTCTTCAACCAATCTAATTGCATTCGGCTGTGGGATCCGCTCCATGGTGGACTTCGATGGGGGGTGGGGGTACAACCCTATCGGAGGGATGATAGGGTTAGGAAAAGGGCACCCTTCCAGCATTGTAAGCCAACTAGGCTCCGACCGTTTCTCTTACTGCCTTCCCGGCCGGTCTGATTCACACTCCGGCCAGCCAACCCTCAACTTCGGCTCTGATGCCTTTATTGATGCTAGTGCTACAAATGTACAAACAACTCCAATCTCCGGCCACGAGTACTACAATTACCTCAACTTGACCACCATAACTGTAAACGGAGATGTCGTGTACATCATGCCAGAAACCAGCTCTAGAGCAAAGCTTGTGCTCTTGGACACAGGAGAACCAACCACCTGGTTTGTTGAGGACGCCTATTATGGTCTGCAAGACGGCCTTGTGAGGTACTTTGCAGAGATTTACGGTTGGAAGGAGCCCAAGATAGTTTATCCTAGTGTTTACGATTTGTGTTACGATCTTCCGACTAATATGTCTAGCATCGTTTTCCCAAAAGTTGCTATACAGTTCCTAGGTGGGGCTAGTTTAGATCTGCAGGATGCTTTTAAGATCTTCCCGGATGAGCATCAGTTTTGCATGGTCTTAAAGGAAGGTGCTCCAAATGTGGTAGGTGTTTACCAGCAGATGGGTTATAGATTCTTGTTTGATCTCGCTCAGTCCAAGCTCTCTTTTGCTCCGAACATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

431

Amino Acids

46.9

Weight (kDa)

5.44

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 79 - 256 1e-20 Xylanase inhibitor N-terminal
TAXi_C PF14541 280 - 427 3e-16 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1078
AccB1I GGYRCC 1 cut(s) 663
AccB7I CCANNNNNTGG 1 cut(s) 1231
AccBSI CCGCTC 1 cut(s) 594
AccI GTMKAC 1 cut(s) 234
AciI CCGC 2 cut(s) 48, 592
AclI AACGTT 1 cut(s) 342
AclWI GGATC 4 cut(s) 188, 466, 583, 596
AcoI YGGCCR 4 cut(s) 447, 721, 742, 820
AcyI GRCGYC 1 cut(s) 960
AfaI GTAC 7 cut(s) 58, 121, 626, 801, 830, 881, 995
AfiI CCNNNNNNNGG 7 cut(s) 252, 283, 598, 638, 818, 1123, 1231
AflIII ACRYGT 1 cut(s) 1287
AgsI TTSAA 3 cut(s) 340, 392, 561
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 2 cut(s) 196, 944
AluBI AGCT 5 cut(s) 80, 154, 900, 913, 1270
AluI AGCT 5 cut(s) 80, 154, 900, 913, 1270
Alw21I GWGCWC 2 cut(s) 921, 1204
Alw26I GTCTC 1 cut(s) 531
AlwI GGATC 4 cut(s) 188, 466, 583, 596
AoxI GGCC 6 cut(s) 72, 447, 721, 742, 820, 982
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AspA2I CCTAGG 1 cut(s) 1117
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 2 cut(s) 720, 1163
AsuHPI GGTGA 2 cut(s) 259, 339
AvrII CCTAGG 1 cut(s) 1117
BaeGI GKGCMC 1 cut(s) 666
BamHI GGATCC 1 cut(s) 588
BanI GGYRCC 1 cut(s) 663
BanII GRGCYC 1 cut(s) 1026
BauI CACGAG 2 cut(s) 115, 824
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 2 cut(s) 921, 1204
BccI CCATC 5 cut(s) 64, 278, 425, 605, 1225
BceAI ACGGC 1 cut(s) 997
BciT130I CCWGG 2 cut(s) 198, 946
BcnI CCSGG 2 cut(s) 720, 1163
BcoDI GTCTC 1 cut(s) 531
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 8 cut(s) 123, 689, 786, 903, 1041, 1083, 1118, 1128
BfmI CTRYAG 1 cut(s) 1139
BfoI RGCGCY 1 cut(s) 246
BglI GCCNNNNNGGC 2 cut(s) 690, 720
BglII AGATCT 2 cut(s) 1135, 1155
BisI GCNGC 1 cut(s) 48
BlnI CCTAGG 1 cut(s) 1117
BlsI GCNGC 1 cut(s) 49
BmcAI AGTACT 2 cut(s) 121, 830
Bme1390I CCNGG 4 cut(s) 198, 720, 946, 1163
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 4 cut(s) 590, 665, 694, 1023
BmrFI CCNGG 4 cut(s) 198, 720, 946, 1163
BmsI GCATC 5 cut(s) 760, 772, 1095, 1135, 1180
BpiI GAAGAC 1 cut(s) 199
BpuMI CCSGG 2 cut(s) 720, 1163
BsaAI YACGTR 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 1170
BsaHI GRCGYC 1 cut(s) 960
BsaJI CCNNGG 2 cut(s) 597, 1117
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bsc4I CCNNNNNNNGG 7 cut(s) 252, 283, 598, 638, 818, 1123, 1231
Bse118I RCCGGY 3 cut(s) 50, 449, 723
Bse8I GATNNNNATC 1 cut(s) 1170
BseBI CCWGG 2 cut(s) 198, 946
BseDI CCNNGG 2 cut(s) 597, 1117
BseGI GGATG 3 cut(s) 648, 1150, 1171
BseJI GATNNNNATC 1 cut(s) 1170
BseLI CCNNNNNNNGG 7 cut(s) 252, 283, 598, 638, 818, 1123, 1231
BseMII CTCAG 2 cut(s) 95, 1274
BseRI GAGGAG 7 cut(s) 249, 529, 532, 535, 538, 541, 544
BseSI GKGCMC 1 cut(s) 666
BseX3I CGGCCG 2 cut(s) 447, 721
BseYI CCCAGC 1 cut(s) 479
Bsh1285I CGRYCG 3 cut(s) 450, 700, 724
BshFI GGCC 6 cut(s) 74, 449, 723, 744, 822, 984
BshNI GGYRCC 1 cut(s) 663
BsiEI CGRYCG 3 cut(s) 450, 700, 724
BsiHKAI GWGCWC 2 cut(s) 921, 1204
BsiSI CCGG 8 cut(s) 51, 225, 450, 720, 724, 741, 819, 1163
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 7 cut(s) 252, 283, 598, 638, 818, 1123, 1231
BsmAI GTCTC 1 cut(s) 531
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 6 cut(s) 74, 449, 723, 744, 822, 984
Bsp1286I GDGCHC 4 cut(s) 666, 921, 1026, 1204
Bsp1407I TGTACA 2 cut(s) 799, 879
Bsp143I GATC 7 cut(s) 193, 458, 588, 1063, 1135, 1155, 1252
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 2 cut(s) 48, 592
BspANI GGCC 6 cut(s) 74, 449, 723, 744, 822, 984
BspCNI CTCAG 2 cut(s) 94, 1273
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 4 cut(s) 590, 665, 694, 1023
BspMAI CTGCAG 1 cut(s) 1143
BspPI GGATC 4 cut(s) 188, 466, 583, 596
BspT107I GGYRCC 1 cut(s) 663
BsrBI CCGCTC 1 cut(s) 594
BsrFI RCCGGY 3 cut(s) 50, 449, 723
BsrGI TGTACA 2 cut(s) 799, 879
BssAI RCCGGY 3 cut(s) 50, 449, 723
BssECI CCNNGG 2 cut(s) 597, 1117
BssMI GATC 7 cut(s) 193, 458, 588, 1063, 1135, 1155, 1252
BssNI GRCGYC 1 cut(s) 960
BssSI CACGAG 2 cut(s) 115, 824
BssT1I CCWWGG 2 cut(s) 597, 1117
Bst2BI CACGAG 2 cut(s) 115, 824
Bst2UI CCWGG 2 cut(s) 198, 946
Bst4CI ACNGT 5 cut(s) 205, 701, 862, 1013, 1113
Bst6I CTCTTC 1 cut(s) 562
BstACI GRCGYC 1 cut(s) 960
BstAUI TGTACA 2 cut(s) 799, 879
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 425, 746
BstDEI CTNAG 2 cut(s) 81, 1260
BstDSI CCRYGG 1 cut(s) 597
BstENI CCTNNNNNAGG 1 cut(s) 636
BstF5I GGATG 3 cut(s) 648, 1150, 1171
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 7 cut(s) 196, 461, 591, 1066, 1138, 1158, 1255
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 7 cut(s) 193, 458, 588, 1063, 1135, 1155, 1252
BstMCI CGRYCG 3 cut(s) 450, 700, 724
BstMWI GCNNNNNNNGC 4 cut(s) 333, 681, 690, 720
BstNI CCWGG 2 cut(s) 198, 946
BstNSI RCATGY 1 cut(s) 1291
BstSCI CCNGG 4 cut(s) 196, 718, 944, 1161
BstSFI CTRYAG 1 cut(s) 1139
BstSLI GKGCMC 1 cut(s) 666
BstSNI TACGTA 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 3 cut(s) 588, 1135, 1155
BstXI CCANNNNNNTGG 2 cut(s) 306, 945
BstYI RGATCY 3 cut(s) 588, 1135, 1155
BstZI CGGCCG 2 cut(s) 447, 721
BsuRI GGCC 6 cut(s) 74, 449, 723, 744, 822, 984
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 3 cut(s) 648, 1150, 1171
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 425, 746
CciI TCATGA 1 cut(s) 36
CfoI GCGC 1 cut(s) 245
Cfr10I RCCGGY 3 cut(s) 50, 449, 723
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 2 cut(s) 485, 968
CsiI ACCWGGT 1 cut(s) 944
Csp6I GTAC 7 cut(s) 57, 120, 625, 800, 829, 880, 994
CspCI CAANNNNNGTGG 2 cut(s) 931, 966
CviAII CATG 6 cut(s) 37, 229, 598, 886, 1183, 1288
CviQI GTAC 7 cut(s) 57, 120, 625, 800, 829, 880, 994
DdeI CTNAG 2 cut(s) 81, 1260
DpnI GATC 7 cut(s) 195, 460, 590, 1065, 1137, 1157, 1254
DpnII GATC 7 cut(s) 193, 458, 588, 1063, 1135, 1155, 1252
DrdI GACNNNNNNGTC 1 cut(s) 1078
DseDI GACNNNNNNGTC 1 cut(s) 1078
EaeI YGGCCR 4 cut(s) 447, 721, 742, 820
EagI CGGCCG 2 cut(s) 447, 721
Eam1104I CTCTTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 562
EclXI CGGCCG 2 cut(s) 447, 721
Eco105I TACGTA 1 cut(s) 238
Eco130I CCWWGG 2 cut(s) 597, 1117
Eco24I GRGCYC 1 cut(s) 1026
Eco52I CGGCCG 2 cut(s) 447, 721
EcoNI CCTNNNNNAGG 1 cut(s) 636
EcoRII CCWGG 2 cut(s) 196, 944
EcoT14I CCWWGG 2 cut(s) 597, 1117
EcoT38I GRGCYC 1 cut(s) 1026
ErhI CCWWGG 2 cut(s) 597, 1117
FaeI CATG 6 cut(s) 40, 232, 601, 889, 1186, 1291
FalI AAGNNNNNCTT 2 cut(s) 969, 1001
FaqI GGGAC 1 cut(s) 268
FatI CATG 6 cut(s) 36, 228, 597, 885, 1182, 1287
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 3 cut(s) 655, 1157, 1178
FriOI GRGCYC 1 cut(s) 1026
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 8 cut(s) 123, 689, 786, 903, 1041, 1083, 1118, 1128
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 483
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 6 cut(s) 74, 449, 723, 744, 822, 984
HapII CCGG 8 cut(s) 51, 225, 450, 720, 724, 741, 819, 1163
HgaI GACGC 2 cut(s) 485, 968
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 960
Hin1II CATG 6 cut(s) 40, 232, 601, 889, 1186, 1291
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 4 cut(s) 256, 504, 731, 1242
HpaII CCGG 8 cut(s) 51, 225, 450, 720, 724, 741, 819, 1163
HphI GGTGA 2 cut(s) 259, 339
Hpy166II GTNNAC 7 cut(s) 235, 472, 604, 865, 880, 1048, 1222
Hpy188I TCNGA 8 cut(s) 84, 134, 638, 697, 730, 769, 1071, 1284
Hpy188III TCNNGA 3 cut(s) 37, 191, 903
Hpy8I GTNNAC 7 cut(s) 235, 472, 604, 865, 880, 1048, 1222
Hpy99I CGWCG 3 cut(s) 466, 479, 512
HpyAV CCTTC 4 cut(s) 678, 725, 1012, 1190
HpyCH4III ACNGT 5 cut(s) 205, 701, 862, 1013, 1113
HpyCH4IV ACGT 2 cut(s) 237, 342
HpyCH4V TGCA 5 cut(s) 575, 976, 1001, 1141, 1182
HpyF10VI GCNNNNNNNGC 4 cut(s) 333, 681, 690, 720
HpyF3I CTNAG 2 cut(s) 81, 1260
HpySE526I ACGT 2 cut(s) 237, 342
Hsp92I GRCGYC 1 cut(s) 960
Hsp92II CATG 6 cut(s) 40, 232, 601, 889, 1186, 1291
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 7 cut(s) 193, 458, 588, 1063, 1135, 1155, 1252
LmnI GCTCC 5 cut(s) 599, 698, 1021, 1207, 1285
LweI GCATC 5 cut(s) 760, 772, 1095, 1135, 1180
MabI ACCWGGT 1 cut(s) 944
MaeI CTAG 8 cut(s) 123, 689, 786, 903, 1041, 1083, 1118, 1128
MaeII ACGT 2 cut(s) 237, 342
MaeIII GTNAC 1 cut(s) 1058
MalI GATC 7 cut(s) 195, 460, 590, 1065, 1137, 1157, 1254
MbiI CCGCTC 1 cut(s) 594
MboI GATC 7 cut(s) 193, 458, 588, 1063, 1135, 1155, 1252
MboII GAAGA 4 cut(s) 199, 549, 1058, 1150
MflI RGATCY 3 cut(s) 588, 1135, 1155
MhlI GDGCHC 4 cut(s) 666, 921, 1026, 1204
MluCI AATT 2 cut(s) 570, 835
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 5 cut(s) 384, 428, 720, 995, 1094
MseI TTAA 4 cut(s) 186, 1152, 1190, 1294
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 8 cut(s) 51, 225, 450, 720, 724, 741, 819, 1163
MspR9I CCNGG 4 cut(s) 198, 720, 946, 1163
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 2 cut(s) 198, 946
MwoI GCNNNNNNNGC 4 cut(s) 333, 681, 690, 720
NciI CCSGG 2 cut(s) 720, 1163
NcoI CCATGG 1 cut(s) 597
NdeII GATC 7 cut(s) 193, 458, 588, 1063, 1135, 1155, 1252
NlaIII CATG 6 cut(s) 40, 232, 601, 889, 1186, 1291
NlaIV GGNNCC 4 cut(s) 590, 665, 694, 1023
NspI RCATGY 1 cut(s) 1291
PagI TCATGA 1 cut(s) 36
PciI ACATGT 1 cut(s) 1287
PcsI WCGNNNNNNNCGW 1 cut(s) 873
PctI GAATGC 1 cut(s) 575
PfeI GAWTC 3 cut(s) 504, 731, 1242
PflMI CCANNNNNTGG 1 cut(s) 1231
PfoI TCCNGGA 1 cut(s) 1161
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 238
PscI ACATGT 1 cut(s) 1287
Psp1406I AACGTT 1 cut(s) 342
Psp6I CCWGG 2 cut(s) 196, 944
PspFI CCCAGC 1 cut(s) 479
PspGI CCWGG 2 cut(s) 196, 944
PspN4I GGNNCC 4 cut(s) 590, 665, 694, 1023
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 1143
PsuI RGATCY 3 cut(s) 588, 1135, 1155
RsaI GTAC 7 cut(s) 58, 121, 626, 801, 830, 881, 995
RsaNI GTAC 7 cut(s) 57, 120, 625, 800, 829, 880, 994
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 4 cut(s) 186, 1152, 1190, 1294
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 7 cut(s) 193, 458, 588, 1063, 1135, 1155, 1252
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 2 cut(s) 121, 830
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 4 cut(s) 198, 720, 946, 1163
SduI GDGCHC 4 cut(s) 666, 921, 1026, 1204
SexAI ACCWGGT 1 cut(s) 944
SfaNI GCATC 5 cut(s) 760, 772, 1095, 1135, 1180
SfcI CTRYAG 1 cut(s) 1139
SgrAI CRCCGGYG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 35
SnaBI TACGTA 1 cut(s) 238
SpeI ACTAGT 1 cut(s) 122
Sse9I AATT 2 cut(s) 570, 835
SsiI CCGC 2 cut(s) 48, 592
SspMI CTAG 8 cut(s) 123, 689, 786, 903, 1041, 1083, 1118, 1128
StyD4I CCNGG 4 cut(s) 196, 718, 944, 1161
StyI CCWWGG 2 cut(s) 597, 1117
TaaI ACNGT 5 cut(s) 205, 701, 862, 1013, 1113
TaiI ACGT 2 cut(s) 240, 345
TaqI TCGA 3 cut(s) 178, 507, 609
TasI AATT 2 cut(s) 570, 835
TatI WGTACW 4 cut(s) 119, 799, 828, 879
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 3 cut(s) 504, 731, 1242
Tru1I TTAA 4 cut(s) 186, 1152, 1190, 1294
Tru9I TTAA 4 cut(s) 186, 1152, 1190, 1294
TscAI CASTG 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 882
TspRI CASTG 1 cut(s) 324
Van91I CCANNNNNTGG 1 cut(s) 1231
XagI CCTNNNNNAGG 1 cut(s) 636
XbaI TCTAGA 1 cut(s) 902
XceI RCATGY 1 cut(s) 1291
XmaJI CCTAGG 1 cut(s) 1117
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 8 cut(s) 123, 689, 786, 903, 1041, 1083, 1118, 1128
ZrmI AGTACT 2 cut(s) 121, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.