Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002212

Physical Location & Seq

Genomic Coordinates Reverse (-)

14165695 .. 14168893

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2772 bp

ATGTTGGCCAAGCAATTGAAGCATGAGGAGAGTTCAATGGAAGGATCATCATGTCAAATGACTACTGGATGGAAATGTCATCAAAGGGAAATAAATGCTGCACATATTTTGGTACAGATGGCTAATGAAGATTCTGGTTTGCTTCGTCACGGGTTAAATTCGCATGGAGTGAAGCATAGCATGAAAGGGATGCTGAGAATGAGGTGGGAAACGAGAGGTGGTAGAATGGCAGGTGATGGTCATTCTGAAGTGGATGGGAGAAAGGCCAAGTTTCTGGCAAAGGGCCAGCAAGCTGCCTTGGGAGGTCAGATGAATGATGGAGATAGTGTAGTCTTGGCTTTATCAGCAATGCCATGTCCTGGAAGGAGAAAGCATAGAAAGATGAACATCGGTATGGAACTATCTTCTCTTGGACCAAAGTATATGAACTGTAATGTCAGTGAGGACAAGGATGACAATTTGTTTGAAGAGTGTGGAGTTTTTGATGGTGATGAGCTGACTAGTAGATGGGGAAACAATAACCAGAAATCAATTGAAGCTGGTCTCGAGGATCCTCATGATAGATTAGGCATGTCAAGGATAAAGAAGCGGAAAACAGTGGCAATATCCTGCTTTAGTAGAGAAACTGAGGATGTTCATCGCCACTATCATCATGTTGGAAGCCATCCTGCTGCACCACCTCTGGTTTTGATGGAACCAACATTAAACAAAAGGGAGAGGTTTAGGGGTATGAAACGTAAGATGAACATCGCCACTATCAGCCCAAGCTCTGAAGAAGTAAGAGCTCACTTTCGCAAGGAGGAAGCATTGAGGTATTTAGTCTCGGATAGGGGATTTTGTTACACTGCTCTGGATGGTAGAAAGTCTGCAGTCGCTCCTCTAACAAAGATGAAAAAGATTGCCCGATATCATGTTATACTCAAACCTGATAGGCCGCGTCATATTTACACCCTGTGTCTGGTGCGGGATGCAGCTGCTAGATTGCCTGGAGGTGTGGGCACCAGAGCAGATATTTGTACACTCATGCGCGACTCACAGTATCTAGTAGAAGACACCTCCGATGAACAACTTAATCAAGTTGCTAGCAAAGGACTGGACAGGCTGCACTATGAAGTTGATCCCTGCGTCAGGTATGATGGGAAGTTGTGGGTTTATTTACATCGAAATAGAGGGGAGGACGACTTTGAGGACGATGCTACATCATCTGCCTATGTAAGAAGAAGGTACCGCGGAGTATTGGGGAAGAAACTATCTCAGTCTTTTTTACACACAATTTCTGGGCACTTGAAGCTCTCACCTTCTCGAAATCTCACACAAATATTACAAAAATCCAAGAACCAATCCAACGCTCTGAGAGTTCTTGACCTCATCACCCCAAAACCAACCTCCACTGCATCTCGTCGCCAAGGCCATCTTCGCCTCATTCAGGACGTTCTACACTCAGATTCCGATCAACTCAGCAACCCTTCTTCTTTCTCTGGTTCTCATTCATCAATACAGTTCTCTAATTTGTTTGATCAGCTATTCGATTCTAGCCCAGTTGATTCTCATTCATACCCAGAAAGCTTTACAATTGATGCGAGTGTTATTTCACATGCTATAAGCTCTTGTGGGTCTAAGCGTGATCTTCGTGGTGGGGTTCAGCATCACTGCGCTGCAGTACGAAGTGGGTTTGGGGCCAATGTTTATATAGGAAGCTCTTTGATACATTTGTACGGTAAATGCAGTGCGTTGGAGAATGCGTATAAGGTGTTCGATGAAATGCCTGTGAGAAATGTGGTGTCATGGACGGCGATTATTTCAGGGTTTGCACAAGAGTGGCAGGTTGATGTGTGCTTGGAGCTTTTCAGTGAAATGAGAAGCTCCGGATCGAAGCCGAATGATTTTACGTATGCAAGTGTTCTGAGTGCTTGCACAGGCAGTGGAGCTCTGGGGCAAGGGAGATGTGCTCATGGCCAAACGATTCGAATGGGTTTCGATTCGTATGTTCACATTGCTAATGCTTTGATGTCTATGTACTGCAAATGTGGCGCTGTTAAGGATGCGCTTTACATATTTGAAAGTCTGGATGGCAAAGACAATGTGTCTTGGAACTCCATGATTGCAGGGTATGCCCAGCACGGCCTTGTGCTGCAGGCCATTGATCTTTTTGAAGAAATGAAGAATCGAGGCGTGAAACCCGACGCCATTACTTTACTCGGGGTGCTCTCTTCGTGTCGCCACGCGGGTCTTGTGAAAGAAGGCTGGCATTACTTCAATTCGATGGTCGAAGAACATGGCATTCAGCCTGAACTAGATCATTATTCGTGCATTGTGGATCTCCTTGGTCGGGCAGGTTTATTGGACGAGGCTCGAGATTTTATTGAAAAGATGCCTATTCGTCCCAACGCCGTTATTTGGGGCTCGCTTCTTTCTTCTTGTAGGGTTCATGGGGGCGTCTGGATTGGCATTGAGGCTGCAGAGAGCAGGCTGTTGATGGAGCCAGGGTGTGCTTCTACCCATGTGCAATTGGCAAACCTGTACGCTAGTTTGGGTTGTTGGGATGAAGCAGCAAGAGTAAGAAAACTGATGAAAGACAAGGGAATCAAGACAAGTCCTGGGTTCAGCTGGATTGAGATCAGTAACGAAGTTCACAGATTTAGAGCAGAAGACAGTTCAAACCCCAGAATGATTCAAATAATTGGAGTCTTGGATAGTTTGGCAGACCACATGGTCCGCCTCAAAACTTCAGGTTGTGAGCTTCAAATGCAAGAGGAAGAGGATGCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

923

Amino Acids

102.78

Weight (kDa)

8.19

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_2nd_NFRKB	PF25793	261 - 393	1.4e-51	NFRKB second winged helix domain
PPR_2	PF13041	591 - 638	2.2e-12	PPR repeat family
PPR	PF01535	594 - 623	5.3e-06	PPR repeat
PPR_2	PF13041	693 - 737	8.2e-13	PPR repeat family
PPR	PF01535	695 - 725	1e-09	PPR repeat
E_motif	PF20431	816 - 872	1e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37320
fragaria_vesca	FvH4_6g14840 FvH4_6g14850 FvH4_6g14860 FvH4_6g14860 FvH4_6g14860
malus_domestica	MD12G1130300.v1.1
prunus_persica	Prupe.6G245300_v2.0.a1 Prupe.6G245400_v2.0.a1 Prupe.6G245400_v2.0.a1
pyrus_communis	pycom12g12640
rosa_chinensis	RchiOBHm_Chr3g0468071
rosa_laevigata	RLG00000024452 RLG00000024453 RLG00000024454
rosa_multiflora	Rmu_co8076902.1_g000001 Rmu_co8076904.1_g000001 Rmu_co8172106.1_g000001 Rmu_co8309729.1_g000001 Rmu_sc0005326.1_g000004 Rmu_sc0012651.1_g000004 Rmu_sc0012651.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413080 Rroxscaffold_6G00413090 Rroxscaffold_6G00413100
rosa_rugosa	Rorug03G0092100 Rorug03G0092200 Rorug03G0092300
rosa_samantha	Rh3AG140600 Rh3AG140700 Rh3AG140800 Rh3BG161900 Rh3BG162000 Rh3BG162100 Rh3BG162200 Rh3CG161900 Rh3CG162000 Rh3DG162400 Rh3DG162500 Rh3DG162600
rosa_wichuraiana	Rw3G013280 Rw3G013290 Rw3G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
AasI	GACNNNNNNGTC	1 cut(s)	2711
Acc36I	ACCTGC	3 cut(s)	221, 1813, 2324
Acc65I	GGTACC	1 cut(s)	1224
AccB1I	GGYRCC	2 cut(s)	998, 1224
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccII	CGCG	4 cut(s)	937, 1029, 1230, 2225
AccIII	TCCGGA	1 cut(s)	1865
AciI	CCGC	7 cut(s)	589, 935, 964, 1228, 1230, 2225, 2716
AclWI	GGATC	6 cut(s)	52, 545, 558, 1112, 1876, 2325
AcoI	YGGCCR	2 cut(s)	6, 1954
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	3 cut(s)	267, 792, 2712
AcyI	GRCGYC	2 cut(s)	2184, 2436
AdeI	CACNNNGTG	1 cut(s)	954
AfaI	GTAC	7 cut(s)	114, 1018, 1226, 1662, 1715, 2018, 2522
AfiI	CCNNNNNNNGG	6 cut(s)	359, 958, 1128, 1426, 2329, 2397
AhdI	GACNNNNNGTC	1 cut(s)	2083
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	4 cut(s)	358, 985, 2482, 2596
AjuI	GAANNNNNNNTTGG	2 cut(s)	1398, 1430
AleI	CACNNNNGTG	1 cut(s)	1816
Alw21I	GWGCWC	4 cut(s)	787, 1930, 1951, 2208
Alw26I	GTCTC	2 cut(s)	548, 826
AlwI	GGATC	6 cut(s)	52, 545, 558, 1112, 1876, 2325
Ama87I	CYCGRG	3 cut(s)	545, 2198, 2352
Aor13HI	TCCGGA	1 cut(s)	1865
AoxI	GGCC	9 cut(s)	6, 264, 283, 932, 1408, 1677, 1954, 2122, 2136
ApoI	RAATTY	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
Asp718I	GGTACC	1 cut(s)	1224
AspLEI	GCGC	4 cut(s)	1029, 1655, 2033, 2047
AspS9I	GGNCC	4 cut(s)	283, 413, 1677, 2713
AsuHPI	GGTGA	4 cut(s)	245, 500, 1287, 1363
AsuII	TTCGAA	1 cut(s)	1966
AsuNHI	GCTAGC	1 cut(s)	1082
AvaI	CYCGRG	3 cut(s)	545, 2198, 2352
AvaII	GGWCC	2 cut(s)	413, 2713
BaeGI	GKGCMC	2 cut(s)	1001, 1284
BaeI	ACNNNNGTAYC	2 cut(s)	1697, 1730
BalI	TGGCCA	2 cut(s)	8, 1956
BamHI	GGATCC	1 cut(s)	550
BanI	GGYRCC	2 cut(s)	998, 1224
BanII	GRGCYC	3 cut(s)	787, 1930, 2405
BbsI	GAAGAC	2 cut(s)	1056, 2655
Bbv12I	GWGCWC	4 cut(s)	787, 1930, 1951, 2208
BceAI	ACGGC	3 cut(s)	1806, 2137, 2375
BciT130I	CCWGG	4 cut(s)	360, 987, 2484, 2598
BclI	TGATCA	1 cut(s)	1516
BcoDI	GTCTC	2 cut(s)	548, 826
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	7 cut(s)	501, 978, 1043, 1083, 1533, 2294, 2526
BfmI	CTRYAG	4 cut(s)	867, 1656, 2132, 2457
BfoI	RGCGCY	1 cut(s)	2034
BfuAI	ACCTGC	3 cut(s)	221, 1813, 2324
Bme1390I	CCNGG	4 cut(s)	360, 987, 2484, 2598
Bme18I	GGWCC	2 cut(s)	413, 2713
BmeRI	GACNNNNNGTC	1 cut(s)	2083
BmeT110I	CYCGRG	3 cut(s)	545, 2198, 2352
BmgT120I	GGNCC	4 cut(s)	283, 413, 1677, 2713
BmiI	GGNNCC	6 cut(s)	552, 696, 1000, 1226, 1678, 2481
BmrFI	CCNGG	4 cut(s)	360, 987, 2484, 2598
BmrI	ACTGGG	1 cut(s)	1532
BmsI	GCATC	9 cut(s)	180, 958, 1183, 1403, 1567, 1654, 2032, 2361, 2752
BmtI	GCTAGC	1 cut(s)	1086
BmuI	ACTGGG	1 cut(s)	1532
BpiI	GAAGAC	2 cut(s)	1056, 2655
BplI	GAGNNNNNCTC	2 cut(s)	1933, 1965
BpmI	CTGGAG	1 cut(s)	1008
Bpu14I	TTCGAA	1 cut(s)	1966
BsaAI	YACGTR	1 cut(s)	1890
BsaBI	GATNNNNATC	5 cut(s)	386, 636, 746, 1449, 2615
BsaHI	GRCGYC	2 cut(s)	2184, 2436
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	6 cut(s)	297, 1228, 1405, 2323, 2483, 2597
BsaWI	WCCGGW	1 cut(s)	1865
BsaXI	ACNNNNNCTCC	6 cut(s)	312, 342, 1727, 1757, 2471, 2501
Bsc4I	CCNNNNNNNGG	6 cut(s)	359, 958, 1128, 1426, 2329, 2397
Bse1I	ACTGG	3 cut(s)	70, 1098, 1538
Bse3DI	GCAATG	2 cut(s)	354, 1992
Bse8I	GATNNNNATC	5 cut(s)	386, 636, 746, 1449, 2615
BseAI	TCCGGA	1 cut(s)	1865
BseBI	CCWGG	4 cut(s)	360, 987, 2484, 2598
BseDI	CCNNGG	6 cut(s)	297, 1228, 1405, 2323, 2483, 2597
BseJI	GATNNNNATC	5 cut(s)	386, 636, 746, 1449, 2615
BseLI	CCNNNNNNNGG	6 cut(s)	359, 958, 1128, 1426, 2329, 2397
BseMI	GCAATG	2 cut(s)	354, 1992
BseMII	CTCAG	7 cut(s)	185, 618, 1268, 1343, 1455, 1471, 1895
BseNI	ACTGG	3 cut(s)	70, 1098, 1538
BseRI	GAGGAG	2 cut(s)	41, 867
BseSI	GKGCMC	2 cut(s)	1001, 1284
BseYI	CCCAGC	1 cut(s)	2115
BsgI	GTGCAG	3 cut(s)	84, 657, 1088
Bsh1236I	CGCG	4 cut(s)	937, 1029, 1230, 2225
BshFI	GGCC	9 cut(s)	8, 266, 285, 934, 1410, 1679, 1956, 2124, 2138
BshNI	GGYRCC	2 cut(s)	998, 1224
BsiHKAI	GWGCWC	4 cut(s)	787, 1930, 1951, 2208
BsiHKCI	CYCGRG	3 cut(s)	545, 2198, 2352
BsiSI	CCGG	1 cut(s)	1866
BslFI	GGGAC	1 cut(s)	2367
BslI	CCNNNNNNNGG	6 cut(s)	359, 958, 1128, 1426, 2329, 2397
BsmAI	GTCTC	2 cut(s)	548, 826
BsmFI	GGGAC	1 cut(s)	2367
BsmI	GAATGC	2 cut(s)	1744, 2280
BsnI	GGCC	9 cut(s)	8, 266, 285, 934, 1410, 1679, 1956, 2124, 2138
Bso31I	GGTCTC	1 cut(s)	548
BsoBI	CYCGRG	3 cut(s)	545, 2198, 2352
Bsp119I	TTCGAA	1 cut(s)	1966
Bsp1286I	GDGCHC	7 cut(s)	787, 1001, 1284, 1930, 1951, 2208, 2405
Bsp13I	TCCGGA	1 cut(s)	1865
Bsp1407I	TGTACA	1 cut(s)	1016
BspACI	CCGC	7 cut(s)	589, 935, 964, 1228, 1230, 2225, 2716
BspANI	GGCC	9 cut(s)	8, 266, 285, 934, 1410, 1679, 1956, 2124, 2138
BspCNI	CTCAG	7 cut(s)	186, 619, 1267, 1344, 1454, 1470, 1896
BspEI	TCCGGA	1 cut(s)	1865
BspFNI	CGCG	4 cut(s)	937, 1029, 1230, 2225
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	6 cut(s)	552, 696, 1000, 1226, 1678, 2481
BspMAI	CTGCAG	4 cut(s)	871, 1660, 2136, 2461
BspMI	ACCTGC	3 cut(s)	221, 1813, 2324
BspOI	GCTAGC	1 cut(s)	1086
BspPI	GGATC	6 cut(s)	52, 545, 558, 1112, 1876, 2325
BspT104I	TTCGAA	1 cut(s)	1966
BspT107I	GGYRCC	2 cut(s)	998, 1224
BspTNI	GGTCTC	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	354, 1992
BsrGI	TGTACA	1 cut(s)	1016
BsrI	ACTGG	3 cut(s)	70, 1098, 1538
BssECI	CCNNGG	6 cut(s)	297, 1228, 1405, 2323, 2483, 2597
BssNI	GRCGYC	2 cut(s)	2184, 2436
BssT1I	CCWWGG	3 cut(s)	297, 1405, 2323
Bst2UI	CCWGG	4 cut(s)	360, 987, 2484, 2598
Bst4CI	ACNGT	6 cut(s)	431, 598, 1038, 1500, 1718, 2654
Bst6I	CTCTTC	3 cut(s)	462, 2215, 2751
BstACI	GRCGYC	2 cut(s)	2184, 2436
BstAPI	GCANNNNNTGC	1 cut(s)	2111
BstAUI	TGTACA	1 cut(s)	1016
BstBAI	YACGTR	1 cut(s)	1890
BstBI	TTCGAA	1 cut(s)	1966
BstC8I	GCNNGC	8 cut(s)	287, 291, 1084, 1912, 2136, 2246, 2405, 2468
BstDEI	CTNAG	8 cut(s)	194, 627, 1254, 1352, 1441, 1457, 1617, 1904
BstDSI	CCRYGG	1 cut(s)	1228
BstENI	CCTNNNNNAGG	2 cut(s)	1126, 1424
BstFNI	CGCG	4 cut(s)	937, 1029, 1230, 2225
BstH2I	RGCGCY	1 cut(s)	2034
BstHHI	GCGC	4 cut(s)	1029, 1655, 2033, 2047
BstMAI	GTCTC	2 cut(s)	548, 826
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 344, 1288, 1416, 2028, 2111, 2746
BstNI	CCWGG	4 cut(s)	360, 987, 2484, 2598
BstNSI	RCATGY	2 cut(s)	574, 1598
BstSCI	CCNGG	4 cut(s)	358, 985, 2482, 2596
BstSFI	CTRYAG	4 cut(s)	867, 1656, 2132, 2457
BstSLI	GKGCMC	2 cut(s)	1001, 1284
BstSNI	TACGTA	1 cut(s)	1890
BstUI	CGCG	4 cut(s)	937, 1029, 1230, 2225
BstV2I	GAAGAC	2 cut(s)	1056, 2655
BstX2I	RGATCY	2 cut(s)	550, 2317
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	2 cut(s)	550, 2317
BsuRI	GGCC	9 cut(s)	8, 266, 285, 934, 1410, 1679, 1956, 2124, 2138
BtgI	CCRYGG	1 cut(s)	1228
BtgZI	GCGATG	2 cut(s)	623, 733
BtsI	GCAGTG	5 cut(s)	843, 1389, 1648, 1732, 1927
BtsIMutI	CAGTG	8 cut(s)	445, 603, 843, 1389, 1648, 1732, 1855, 1927
BveI	ACCTGC	3 cut(s)	221, 1813, 2324
Cac8I	GCNNGC	8 cut(s)	287, 291, 1084, 1912, 2136, 2246, 2405, 2468
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	4 cut(s)	1029, 1655, 2033, 2047
Cfr13I	GGNCC	4 cut(s)	283, 413, 1677, 2713
Cfr42I	CCGCGG	1 cut(s)	1231
CseI	GACGC	4 cut(s)	926, 1114, 2192, 2425
Csp6I	GTAC	7 cut(s)	113, 1017, 1225, 1661, 1714, 2017, 2521
CviQI	GTAC	7 cut(s)	113, 1017, 1225, 1661, 1714, 2017, 2521
DdeI	CTNAG	8 cut(s)	194, 627, 1254, 1352, 1441, 1457, 1617, 1904
DraIII	CACNNNGTG	1 cut(s)	954
DrdI	GACNNNNNNGTC	1 cut(s)	2711
DriI	GACNNNNNGTC	1 cut(s)	2083
DseDI	GACNNNNNNGTC	1 cut(s)	2711
EaeI	YGGCCR	2 cut(s)	6, 1954
Eam1104I	CTCTTC	3 cut(s)	462, 2215, 2751
Eam1105I	GACNNNNNGTC	1 cut(s)	2083
EarI	CTCTTC	3 cut(s)	462, 2215, 2751
EciI	GGCGGA	1 cut(s)	2705
Ecl136II	GAGCTC	2 cut(s)	785, 1928
Eco105I	TACGTA	1 cut(s)	1890
Eco130I	CCWWGG	3 cut(s)	297, 1405, 2323
Eco24I	GRGCYC	3 cut(s)	787, 1930, 2405
Eco31I	GGTCTC	1 cut(s)	548
Eco32I	GATATC	1 cut(s)	908
Eco47I	GGWCC	2 cut(s)	413, 2713
Eco53kI	GAGCTC	2 cut(s)	785, 1928
Eco57I	CTGAAG	3 cut(s)	267, 792, 2712
Eco88I	CYCGRG	3 cut(s)	545, 2198, 2352
EcoICRI	GAGCTC	2 cut(s)	785, 1928
EcoNI	CCTNNNNNAGG	2 cut(s)	1126, 1424
EcoRII	CCWGG	4 cut(s)	358, 985, 2482, 2596
EcoRV	GATATC	1 cut(s)	908
EcoT14I	CCWWGG	3 cut(s)	297, 1405, 2323
EcoT38I	GRGCYC	3 cut(s)	787, 1930, 2405
ErhI	CCWWGG	3 cut(s)	297, 1405, 2323
FalI	AAGNNNNNCTT	2 cut(s)	1398, 1430
FaqI	GGGAC	1 cut(s)	2367
FauI	CCCGC	2 cut(s)	957, 2218
FbaI	TGATCA	1 cut(s)	1516
FriOI	GRGCYC	3 cut(s)	787, 1930, 2405
FspBI	CTAG	7 cut(s)	501, 978, 1043, 1083, 1533, 2294, 2526
GlaI	GCGC	4 cut(s)	1028, 1654, 2032, 2046
GsaI	CCCAGC	1 cut(s)	2119
GsuI	CTGGAG	1 cut(s)	1008
HaeII	RGCGCY	1 cut(s)	2034
HaeIII	GGCC	9 cut(s)	8, 266, 285, 934, 1410, 1679, 1956, 2124, 2138
HapII	CCGG	1 cut(s)	1866
HgaI	GACGC	4 cut(s)	926, 1114, 2192, 2425
HhaI	GCGC	4 cut(s)	1029, 1655, 2033, 2047
Hin1I	GRCGYC	2 cut(s)	2184, 2436
Hin6I	GCGC	4 cut(s)	1027, 1653, 2031, 2045
HinP1I	GCGC	4 cut(s)	1027, 1653, 2031, 2045
HindIII	AAGCTT	1 cut(s)	1564
HpaII	CCGG	1 cut(s)	1866
HphI	GGTGA	4 cut(s)	245, 500, 1287, 1363
Hpy166II	GTNNAC	3 cut(s)	1019, 1990, 2632
Hpy188I	TCNGA	9 cut(s)	247, 309, 772, 826, 1060, 1353, 1444, 1450, 1905
Hpy8I	GTNNAC	3 cut(s)	1019, 1990, 2632
Hpy99I	CGWCG	2 cut(s)	1404, 2186
HpyAV	CCTTC	6 cut(s)	35, 357, 1215, 1308, 1476, 2234
HpyCH4III	ACNGT	6 cut(s)	431, 598, 1038, 1500, 1718, 2654
HpyCH4IV	ACGT	3 cut(s)	736, 1431, 1889
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 344, 1288, 1416, 2028, 2111, 2746
HpyF3I	CTNAG	8 cut(s)	194, 627, 1254, 1352, 1441, 1457, 1617, 1904
HpySE526I	ACGT	3 cut(s)	736, 1431, 1889
Hsp92I	GRCGYC	2 cut(s)	2184, 2436
HspAI	GCGC	4 cut(s)	1027, 1653, 2031, 2045
Kpn2I	TCCGGA	1 cut(s)	1865
KpnI	GGTACC	1 cut(s)	1228
Ksp22I	TGATCA	1 cut(s)	1516
KspI	CCGCGG	1 cut(s)	1231
LmnI	GCTCC	6 cut(s)	880, 1840, 1868, 1925, 2479, 2770
LweI	GCATC	9 cut(s)	180, 958, 1183, 1403, 1567, 1654, 2032, 2361, 2752
MaeI	CTAG	7 cut(s)	501, 978, 1043, 1083, 1533, 2294, 2526
MaeII	ACGT	3 cut(s)	736, 1431, 1889
MaeIII	GTNAC	3 cut(s)	146, 839, 2621
MfeI	CAATTG	4 cut(s)	14, 531, 1572, 2507
MflI	RGATCY	2 cut(s)	550, 2317
MhlI	GDGCHC	7 cut(s)	787, 1001, 1284, 1930, 1951, 2208, 2405
MlsI	TGGCCA	2 cut(s)	8, 1956
MluNI	TGGCCA	2 cut(s)	8, 1956
MlyI	GAGTC	2 cut(s)	1025, 2694
MmeI	TCCRAC	3 cut(s)	637, 1368, 1713
Mox20I	TGGCCA	2 cut(s)	8, 1956
MroI	TCCGGA	1 cut(s)	1865
MscI	TGGCCA	2 cut(s)	8, 1956
MseI	TTAA	4 cut(s)	155, 704, 1071, 2037
MslI	CAYNNNNRTG	2 cut(s)	392, 1816
Msp20I	TGGCCA	2 cut(s)	8, 1956
MspA1I	CMGCKG	3 cut(s)	974, 1230, 2607
MspI	CCGG	1 cut(s)	1866
MspR9I	CCNGG	4 cut(s)	360, 987, 2484, 2598
MunI	CAATTG	4 cut(s)	14, 531, 1572, 2507
Mva1269I	GAATGC	2 cut(s)	1744, 2280
MvaI	CCWGG	4 cut(s)	360, 987, 2484, 2598
MvnI	CGCG	4 cut(s)	937, 1029, 1230, 2225
MwoI	GCNNNNNNNGC	7 cut(s)	19, 344, 1288, 1416, 2028, 2111, 2746
NheI	GCTAGC	1 cut(s)	1082
NlaIV	GGNNCC	6 cut(s)	552, 696, 1000, 1226, 1678, 2481
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	2 cut(s)	574, 1598
NspV	TTCGAA	1 cut(s)	1966
OliI	CACNNNNGTG	1 cut(s)	1816
PaeR7I	CTCGAG	2 cut(s)	545, 2352
PagI	TCATGA	1 cut(s)	556
PaqCI	CACCTGC	1 cut(s)	221
PctI	GAATGC	2 cut(s)	1744, 2280
PfeI	GAWTC	9 cut(s)	131, 1445, 1529, 1544, 1963, 1979, 2164, 2583, 2671
PflMI	CCANNNNNTGG	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	358
PleI	GAGTC	2 cut(s)	1025, 2693
PpsI	GAGTC	2 cut(s)	1025, 2693
Ppu21I	YACGTR	1 cut(s)	1890
Psp124BI	GAGCTC	2 cut(s)	787, 1930
Psp6I	CCWGG	4 cut(s)	358, 985, 2482, 2596
PspFI	CCCAGC	1 cut(s)	2115
PspGI	CCWGG	4 cut(s)	358, 985, 2482, 2596
PspN4I	GGNNCC	6 cut(s)	552, 696, 1000, 1226, 1678, 2481
PspPI	GGNCC	4 cut(s)	283, 413, 1677, 2713
PsrI	GAACNNNNNNTAC	2 cut(s)	1736, 1768
PstI	CTGCAG	4 cut(s)	871, 1660, 2136, 2461
PsuI	RGATCY	2 cut(s)	550, 2317
PvuII	CAGCTG	2 cut(s)	974, 2607
RsaI	GTAC	7 cut(s)	114, 1018, 1226, 1662, 1715, 2018, 2522
RsaNI	GTAC	7 cut(s)	113, 1017, 1225, 1661, 1714, 2017, 2521
RseI	CAYNNNNRTG	2 cut(s)	392, 1816
SacI	GAGCTC	2 cut(s)	787, 1930
SacII	CCGCGG	1 cut(s)	1231
SaqAI	TTAA	4 cut(s)	155, 704, 1071, 2037
Sau96I	GGNCC	4 cut(s)	283, 413, 1677, 2713
SchI	GAGTC	2 cut(s)	1025, 2694
ScrFI	CCNGG	4 cut(s)	360, 987, 2484, 2598
SduI	GDGCHC	7 cut(s)	787, 1001, 1284, 1930, 1951, 2208, 2405
SfaNI	GCATC	9 cut(s)	180, 958, 1183, 1403, 1567, 1654, 2032, 2361, 2752
SfcI	CTRYAG	4 cut(s)	867, 1656, 2132, 2457
Sfr274I	CTCGAG	2 cut(s)	545, 2352
Sfr303I	CCGCGG	1 cut(s)	1231
SfuI	TTCGAA	1 cut(s)	1966
SgrBI	CCGCGG	1 cut(s)	1231
SinI	GGWCC	2 cut(s)	413, 2713
SlaI	CTCGAG	2 cut(s)	545, 2352
SmiMI	CAYNNNNRTG	2 cut(s)	392, 1816
SmlI	CTYRAG	2 cut(s)	545, 2352
SmoI	CTYRAG	2 cut(s)	545, 2352
SnaBI	TACGTA	1 cut(s)	1890
SpeI	ACTAGT	1 cut(s)	500
SsiI	CCGC	7 cut(s)	589, 935, 964, 1228, 1230, 2225, 2716
SspI	AATATT	1 cut(s)	1320
SspMI	CTAG	7 cut(s)	501, 978, 1043, 1083, 1533, 2294, 2526
SstI	GAGCTC	2 cut(s)	787, 1930
StyD4I	CCNGG	4 cut(s)	358, 985, 2482, 2596
StyI	CCWWGG	3 cut(s)	297, 1405, 2323
TaaI	ACNGT	6 cut(s)	431, 598, 1038, 1500, 1718, 2654
TaiI	ACGT	3 cut(s)	739, 1434, 1892
TatI	WGTACW	2 cut(s)	1016, 2016
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	9 cut(s)	131, 1445, 1529, 1544, 1963, 1979, 2164, 2583, 2671
Tru1I	TTAA	4 cut(s)	155, 704, 1071, 2037
Tru9I	TTAA	4 cut(s)	155, 704, 1071, 2037
TscAI	CASTG	8 cut(s)	445, 603, 850, 1396, 1655, 1732, 1855, 1927
TseFI	GTSAC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	146
TspRI	CASTG	8 cut(s)	445, 603, 850, 1396, 1655, 1732, 1855, 1927
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	413, 2713
XagI	CCTNNNNNAGG	2 cut(s)	1126, 1424
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	2 cut(s)	574, 1598
XhoI	CTCGAG	2 cut(s)	545, 2352
XspI	CTAG	7 cut(s)	501, 978, 1043, 1083, 1533, 2294, 2526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.