RchiOBHm_Chr3g0471011

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
16955020 .. 16956312
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1293 bp
ATGGCATCCCAAACCCCCCAGCTTCACTTTACCTTATTCCCTCTTATGGCCCAAGGCCACATGATTCCAATGGTTGATATGGCTAGAATGTTGGCACTGCGAGGTGTTACCATAACCATTTTCACCACACCATGCAACGCAGCCCGTTTCAAATTAGTCCTTGATCGTGCCATCAAAGCCGGGCTTCAAATTCGAGTAATCGAACTGAAGTTTCCCTGTCAAGAGGCAGGACTACCCGAGGGGTGTGAGAACTTTGACATGCTACCTTCACCCCACTTAGCCTTCAATTTCTACAATGCAACAGCTATGCTACAAGAGCAAGTAGAGATGTTGTTCCCAGAGCTCACACCAAAGCCATGTTGCATAATCTCTGACTTATGCTTGCCTTGGACAAACGACATTGCTAACATGTTTGATATACCAAGGATAAGTTTCCATGTACATAGTTGCTTTTTACTCTTGTGTTTGTACAATTTAGGCGTTCATTCCAAGGTGTTTGAGAGTGTAACCTCAGATTCTGAGTACTTTATCGTTCCAGGTAATTTGCCTGATCGAATCGAGGTTACCAAAGCTCAGATACCAGGACCATTGCTTCCAAACTTGAAGGATTTCATTGTCCGGATGGGAGCAGCTGAAAGGGCCTCATACGGTTCCATTGTGAACACTTTCGAAGAACTCGAGGGACCATATGCTAATGAGTACAAAAACGCAACAAAAAAGAACCATCTGTGGTGTATTGGCCCAACCTCATTATGGAACCAAGATGACTTGGAAAGAGGAAACAAGTCATCAATTGATAAAAATCAGTGTTTGAAGTGGCTTGATTCCTGGGAACCAAACTCTGTGCTCTATGTTTGCCTTGGAAGCCTATGTAATATGATACCTTCACAACTCATAGAGCTTGGCTTGGGGATAGAAGAGTCAAAGAGGCCATTTATTTGGGTTATAAAGGAAGGGAGGACATCAAAAGAGTTGGAGGAGTTGCTTTTGAAAGATGGATTTGAGGAAAGAAACAAAGAAAGAGGCCTTTTGATCAGAGGTTGGGCACCTCAAGTGTTGATTTTGTCACACCAATCAACTGGAGGGTTTATAACACATTGTGGATCAAGTTCATTTCTTGAAGGAGTATGTGCTGGAGTTCCCATGGCCACTTGGCCACTATTTGGTGACCAATTTTTTGCTGAGCATCTTCTTGTGACAGTTCTGAAAATTGCTGTAAGAATTGGGGTGCCAAAACCACTGAATTGGGGAGAGGAAGAAAAGACTGGGATATTGGTGTACAAGGAAATGTGA

Protein Analysis

430

Amino Acids

48.35

Weight (kDa)

5.56

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 248 1e-05 Glycosyltransferase, N-terminal domain
UDPGT PF00201 280 - 392 4.7e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 947, 1091
AccB1I GGYRCC 2 cut(s) 1045, 1228
AccB7I CCANNNNNTGG 1 cut(s) 1163
AccIII TCCGGA 1 cut(s) 618
AclWI GGATC 1 cut(s) 1111
AcoI YGGCCR 2 cut(s) 1146, 1154
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 1100
AfaI GTAC 5 cut(s) 441, 470, 524, 701, 1280
AfiI CCNNNNNNNGG 3 cut(s) 46, 753, 1163
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 7 cut(s) 151, 188, 286, 604, 814, 991, 1121
AjnI CCWGG 3 cut(s) 535, 580, 827
AluBI AGCT 6 cut(s) 22, 305, 343, 572, 632, 901
AluI AGCT 6 cut(s) 22, 305, 343, 572, 632, 901
Alw21I GWGCWC 2 cut(s) 345, 849
AlwI GGATC 1 cut(s) 1111
AlwNI CAGNNNCTG 1 cut(s) 518
Ama87I CYCGRG 2 cut(s) 236, 677
Aor13HI TCCGGA 1 cut(s) 618
AoxI GGCC 8 cut(s) 48, 55, 639, 739, 929, 1024, 1146, 1154
ApeKI GCWGC 2 cut(s) 140, 629
ApoI RAATTY 1 cut(s) 189
ArsI GACNNNNNNTTYG 2 cut(s) 1160, 1192
Asp700I GAANNNNTTC 2 cut(s) 608, 665
AspS9I GGNCC 5 cut(s) 49, 584, 639, 683, 740
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 3 cut(s) 115, 261, 1178
AsuII TTCGAA 1 cut(s) 669
AvaI CYCGRG 2 cut(s) 236, 677
AvaII GGWCC 2 cut(s) 584, 683
BaeGI GKGCMC 1 cut(s) 1048
BalI TGGCCA 2 cut(s) 1148, 1156
BanI GGYRCC 2 cut(s) 1045, 1228
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 345, 849
BbvI GCAGC 2 cut(s) 152, 641
BccI CCATC 4 cut(s) 179, 616, 732, 989
BciT130I CCWGG 3 cut(s) 537, 582, 829
BclI TGATCA 1 cut(s) 1032
BcnI CCSGG 1 cut(s) 181
BfaI CTAG 1 cut(s) 84
BisI GCNGC 2 cut(s) 141, 630
BlpI GCTNAGC 1 cut(s) 1182
BlsI GCNGC 2 cut(s) 142, 631
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 4 cut(s) 181, 537, 582, 829
Bme18I GGWCC 2 cut(s) 584, 683
BmeT110I CYCGRG 2 cut(s) 236, 677
BmgT120I GGNCC 5 cut(s) 49, 584, 639, 683, 740
BmiI GGNNCC 6 cut(s) 652, 684, 758, 834, 1047, 1230
BmrFI CCNGG 4 cut(s) 181, 537, 582, 829
BmrI ACTGGG 1 cut(s) 1275
BmsI GCATC 2 cut(s) 14, 1195
BmuI ACTGGG 1 cut(s) 1275
BpmI CTGGAG 2 cut(s) 1101, 1155
Bpu1102I GCTNAGC 1 cut(s) 1182
Bpu14I TTCGAA 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 1035
BpuMI CCSGG 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 8 cut(s) 52, 237, 386, 422, 489, 828, 859, 1143
BsaWI WCCGGW 1 cut(s) 618
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 753, 1163
Bse1I ACTGG 2 cut(s) 1084, 1270
Bse3DI GCAATG 2 cut(s) 399, 587
Bse8I GATNNNNATC 1 cut(s) 801
BseAI TCCGGA 1 cut(s) 618
BseBI CCWGG 3 cut(s) 537, 582, 829
BseDI CCNNGG 8 cut(s) 52, 237, 386, 422, 489, 828, 859, 1143
BseGI GGATG 2 cut(s) 5, 627
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 3 cut(s) 46, 753, 1163
BseMI GCAATG 2 cut(s) 399, 587
BseMII CTCAG 4 cut(s) 510, 525, 587, 1173
BseNI ACTGG 2 cut(s) 1084, 1270
BseRI GAGGAG 1 cut(s) 992
BseSI GKGCMC 1 cut(s) 1048
BseXI GCAGC 2 cut(s) 152, 641
BseYI CCCAGC 1 cut(s) 18
BshFI GGCC 8 cut(s) 50, 57, 641, 741, 931, 1026, 1148, 1156
BshNI GGYRCC 2 cut(s) 1045, 1228
BsiHKAI GWGCWC 2 cut(s) 345, 849
BsiHKCI CYCGRG 2 cut(s) 236, 677
BsiSI CCGG 2 cut(s) 180, 619
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 3 cut(s) 46, 753, 1163
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 8 cut(s) 50, 57, 641, 741, 931, 1026, 1148, 1156
BsoBI CYCGRG 2 cut(s) 236, 677
Bsp119I TTCGAA 1 cut(s) 669
Bsp1286I GDGCHC 3 cut(s) 345, 849, 1048
Bsp13I TCCGGA 1 cut(s) 618
Bsp1407I TGTACA 3 cut(s) 439, 468, 1278
Bsp143I GATC 4 cut(s) 163, 550, 1032, 1103
Bsp1720I GCTNAGC 1 cut(s) 1182
Bsp19I CCATGG 1 cut(s) 1143
BspANI GGCC 8 cut(s) 50, 57, 641, 741, 931, 1026, 1148, 1156
BspCNI CTCAG 4 cut(s) 511, 524, 586, 1174
BspEI TCCGGA 1 cut(s) 618
BspLI GGNNCC 6 cut(s) 652, 684, 758, 834, 1047, 1230
BspPI GGATC 1 cut(s) 1111
BspT104I TTCGAA 1 cut(s) 669
BspT107I GGYRCC 2 cut(s) 1045, 1228
BsrDI GCAATG 2 cut(s) 399, 587
BsrGI TGTACA 3 cut(s) 439, 468, 1278
BsrI ACTGG 2 cut(s) 1084, 1270
BssECI CCNNGG 8 cut(s) 52, 237, 386, 422, 489, 828, 859, 1143
BssMI GATC 4 cut(s) 163, 550, 1032, 1103
BssT1I CCWWGG 6 cut(s) 52, 386, 422, 489, 859, 1143
Bst2UI CCWGG 3 cut(s) 537, 582, 829
Bst4CI ACNGT 2 cut(s) 650, 1201
Bst6I CTCTTC 1 cut(s) 912
BstAUI TGTACA 3 cut(s) 439, 468, 1278
BstBI TTCGAA 1 cut(s) 669
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 5 cut(s) 277, 511, 519, 573, 1182
BstDSI CCRYGG 1 cut(s) 1143
BstEII GGTNACC 2 cut(s) 562, 1166
BstF5I GGATG 2 cut(s) 5, 627
BstKTI GATC 4 cut(s) 166, 553, 1035, 1106
BstMBI GATC 4 cut(s) 163, 550, 1032, 1103
BstMWI GCNNNNNNNGC 4 cut(s) 176, 316, 638, 864
BstNI CCWGG 3 cut(s) 537, 582, 829
BstNSI RCATGY 2 cut(s) 262, 412
BstPI GGTNACC 2 cut(s) 562, 1166
BstSCI CCNGG 4 cut(s) 179, 535, 580, 827
BstSLI GKGCMC 1 cut(s) 1048
BstV1I GCAGC 2 cut(s) 152, 641
BstXI CCANNNNNNTGG 3 cut(s) 939, 1079, 1245
BsuRI GGCC 8 cut(s) 50, 57, 641, 741, 931, 1026, 1148, 1156
BtgI CCRYGG 1 cut(s) 1143
BtsCI GGATG 2 cut(s) 5, 627
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 3 cut(s) 95, 812, 1238
Cac8I GCNNGC 1 cut(s) 383
CaiI CAGNNNCTG 1 cut(s) 518
Cfr13I GGNCC 5 cut(s) 49, 584, 639, 683, 740
Csp6I GTAC 5 cut(s) 440, 469, 523, 700, 1279
CviAII CATG 7 cut(s) 61, 132, 259, 357, 409, 437, 1144
CviQI GTAC 5 cut(s) 440, 469, 523, 700, 1279
DdeI CTNAG 5 cut(s) 277, 511, 519, 573, 1182
DpnI GATC 4 cut(s) 165, 552, 1034, 1105
DpnII GATC 4 cut(s) 163, 550, 1032, 1103
DraIII CACNNNGTG 1 cut(s) 1100
EaeI YGGCCR 2 cut(s) 1146, 1154
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 6 cut(s) 52, 386, 422, 489, 859, 1143
Eco147I AGGCCT 1 cut(s) 1026
Eco24I GRGCYC 1 cut(s) 345
Eco47I GGWCC 2 cut(s) 584, 683
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 227
Eco88I CYCGRG 2 cut(s) 236, 677
Eco91I GGTNACC 2 cut(s) 562, 1166
EcoICRI GAGCTC 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 639
EcoO65I GGTNACC 2 cut(s) 562, 1166
EcoRII CCWGG 3 cut(s) 535, 580, 827
EcoT14I CCWWGG 6 cut(s) 52, 386, 422, 489, 859, 1143
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 6 cut(s) 52, 386, 422, 489, 859, 1143
FaeI CATG 7 cut(s) 64, 135, 262, 360, 412, 440, 1147
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 696
FatI CATG 7 cut(s) 60, 131, 258, 356, 408, 436, 1143
FauNDI CATATG 1 cut(s) 688
FbaI TGATCA 1 cut(s) 1032
Fnu4HI GCNGC 2 cut(s) 141, 630
FokI GGATG 1 cut(s) 634
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 141, 630
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 141, 630
GsaI CCCAGC 1 cut(s) 22
GsuI CTGGAG 2 cut(s) 1101, 1155
HaeIII GGCC 8 cut(s) 50, 57, 641, 741, 931, 1026, 1148, 1156
HapII CCGG 2 cut(s) 180, 619
Hin1II CATG 7 cut(s) 64, 135, 262, 360, 412, 440, 1147
HinfI GANTC 5 cut(s) 64, 515, 555, 824, 920
HpaII CCGG 2 cut(s) 180, 619
HphI GGTGA 3 cut(s) 115, 261, 1178
Hpy166II GTNNAC 2 cut(s) 661, 1279
Hpy188I TCNGA 6 cut(s) 373, 514, 520, 576, 1037, 1206
Hpy188III TCNNGA 3 cut(s) 221, 619, 1118
Hpy8I GTNNAC 2 cut(s) 661, 1279
HpyAV CCTTC 6 cut(s) 276, 292, 598, 894, 947, 1115
HpyCH4III ACNGT 2 cut(s) 650, 1201
HpyCH4V TGCA 3 cut(s) 135, 299, 363
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 316, 638, 864
HpyF3I CTNAG 5 cut(s) 277, 511, 519, 573, 1182
Hsp92II CATG 7 cut(s) 64, 135, 262, 360, 412, 440, 1147
Kpn2I TCCGGA 1 cut(s) 618
Ksp22I TGATCA 1 cut(s) 1032
Kzo9I GATC 4 cut(s) 163, 550, 1032, 1103
LmnI GCTCC 1 cut(s) 626
Lsp1109I GCAGC 2 cut(s) 152, 641
LweI GCATC 2 cut(s) 14, 1195
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 6 cut(s) 106, 505, 562, 1065, 1166, 1195
MalI GATC 4 cut(s) 165, 552, 1034, 1105
MboI GATC 4 cut(s) 163, 550, 1032, 1103
MboII GAAGA 4 cut(s) 683, 929, 1181, 1268
MfeI CAATTG 1 cut(s) 792
MhlI GDGCHC 3 cut(s) 345, 849, 1048
MlsI TGGCCA 2 cut(s) 1148, 1156
MluNI TGGCCA 2 cut(s) 1148, 1156
MlyI GAGTC 1 cut(s) 929
MmeI TCCRAC 1 cut(s) 954
Mox20I TGGCCA 2 cut(s) 1148, 1156
MroI TCCGGA 1 cut(s) 618
MroXI GAANNNNTTC 2 cut(s) 608, 665
MscI TGGCCA 2 cut(s) 1148, 1156
Msp20I TGGCCA 2 cut(s) 1148, 1156
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 2 cut(s) 180, 619
MspR9I CCNGG 4 cut(s) 181, 537, 582, 829
MunI CAATTG 1 cut(s) 792
MvaI CCWGG 3 cut(s) 537, 582, 829
MwoI GCNNNNNNNGC 4 cut(s) 176, 316, 638, 864
NciI CCSGG 1 cut(s) 181
NcoI CCATGG 1 cut(s) 1143
NdeI CATATG 1 cut(s) 688
NdeII GATC 4 cut(s) 163, 550, 1032, 1103
NlaIII CATG 7 cut(s) 64, 135, 262, 360, 412, 440, 1147
NlaIV GGNNCC 6 cut(s) 652, 684, 758, 834, 1047, 1230
NmuCI GTSAC 3 cut(s) 1065, 1166, 1195
NspI RCATGY 2 cut(s) 262, 412
NspV TTCGAA 1 cut(s) 669
PaeR7I CTCGAG 1 cut(s) 677
PceI AGGCCT 1 cut(s) 1026
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 675
PdmI GAANNNNTTC 2 cut(s) 608, 665
PfeI GAWTC 4 cut(s) 64, 515, 555, 824
PflMI CCANNNNNTGG 1 cut(s) 1163
PkrI GCNGC 2 cut(s) 142, 631
PleI GAGTC 1 cut(s) 928
PpsI GAGTC 1 cut(s) 928
PscI ACATGT 1 cut(s) 408
PsiI TTATAA 2 cut(s) 947, 1091
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 535, 580, 827
PspEI GGTNACC 2 cut(s) 562, 1166
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 3 cut(s) 535, 580, 827
PspN4I GGNNCC 6 cut(s) 652, 684, 758, 834, 1047, 1230
PspPI GGNCC 5 cut(s) 49, 584, 639, 683, 740
PspXI VCTCGAGB 1 cut(s) 677
PstNI CAGNNNCTG 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 5 cut(s) 441, 470, 524, 701, 1280
RsaNI GTAC 5 cut(s) 440, 469, 523, 700, 1279
SacI GAGCTC 1 cut(s) 345
SatI GCNGC 2 cut(s) 141, 630
Sau3AI GATC 4 cut(s) 163, 550, 1032, 1103
Sau96I GGNCC 5 cut(s) 49, 584, 639, 683, 740
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 4 cut(s) 181, 537, 582, 829
SduI GDGCHC 3 cut(s) 345, 849, 1048
SfaNI GCATC 2 cut(s) 14, 1195
Sfr274I CTCGAG 1 cut(s) 677
SfuI TTCGAA 1 cut(s) 669
SinI GGWCC 2 cut(s) 584, 683
SlaI CTCGAG 1 cut(s) 677
SmlI CTYRAG 2 cut(s) 677, 1050
SmoI CTYRAG 2 cut(s) 677, 1050
SseBI AGGCCT 1 cut(s) 1026
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 1 cut(s) 1026
StyD4I CCNGG 4 cut(s) 179, 535, 580, 827
StyI CCWWGG 6 cut(s) 52, 386, 422, 489, 859, 1143
TaaI ACNGT 2 cut(s) 650, 1201
TaqI TCGA 6 cut(s) 193, 201, 553, 558, 669, 678
TatI WGTACW 5 cut(s) 439, 468, 522, 699, 1278
TfiI GAWTC 4 cut(s) 64, 515, 555, 824
TscAI CASTG 3 cut(s) 102, 812, 1245
TseFI GTSAC 3 cut(s) 1065, 1166, 1195
TseI GCWGC 2 cut(s) 140, 629
Tsp45I GTSAC 3 cut(s) 1065, 1166, 1195
TspDTI ATGAA 3 cut(s) 473, 601, 1101
TspRI CASTG 3 cut(s) 102, 812, 1245
Van91I CCANNNNNTGG 1 cut(s) 1163
VpaK11BI GGWCC 2 cut(s) 584, 683
XapI RAATTY 1 cut(s) 189
XceI RCATGY 2 cut(s) 262, 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 750
XhoI CTCGAG 1 cut(s) 677
XmnI GAANNNNTTC 2 cut(s) 608, 665
XspI CTAG 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.