Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Reverse (-)

38778951 .. 38781454

Gene Structure 2504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCGGCAACTGACAAAGGATGGACTGCAACAGACTGATAAGAGAGTTGGCCTCATGAATGAAATTTTAGCTGCCATGGACACTGTGAAGTGTTATTCCTGGGAGACAAGTTTCCAGAAGCAAGTTCAAAATATACGAAATTATGAGCTTTCAAGGTTTCATAAAGCGCAATTACTATCTGCTTTGAACAGTTTTATTCTCAACAGCATCCCAGCTGTTGTGACAGTAACTTCATTTGGGGCGTTCACTTTCCTTGGAGGCAAATTGACACCTACAAGGGCATTTACATCACTCTTTCTTTTTGCAGTACGTGCTACGCTTCCCTTTAGAAATGCTGCCCAACTTATTAAGTCAGATGCAGGTGTTATAATTAGGGGGACAGTTGCTTATGTTCCCCAAGTTTCATGGATTTTCAATGCCACTGTACGTGAAAACATTTTATTTGAATCTGAATTTGAAGCTGCACGGTATTGCAAGGCTATTGATGTAACTGAGTTCCATCATGACCTAGACTTACTTCCAGTTTTCAACCGCTGTATCAAGGAAGACTTCAAGGGGAAAACTAAGGTGCTTGTCACAAATCAGCTACATTTTCTGCCTCAAGTGGACGAAGTCATTTTAGTCTCTGACGGTACGATTAAAGAGGAGGGAACCTTTAGGATCTCTCTGAAAACAGTTTGCTGTTCCAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

231

Amino Acids

26.07

Weight (kDa)

8.97

Isoelectric Point (pI)

26.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	1 - 101	3e-13	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AarI	CACCTGC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	350
AciI	CCGC	2 cut(s)	4, 532
AclWI	GGATC	1 cut(s)	668
AcsI	RAATTY	2 cut(s)	63, 452
AfaI	GTAC	3 cut(s)	309, 426, 634
AgsI	TTSAA	8 cut(s)	128, 153, 187, 415, 446, 458, 529, 553
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	6 cut(s)	71, 148, 215, 461, 586, 693
AluI	AGCT	6 cut(s)	71, 148, 215, 461, 586, 693
Alw26I	GTCTC	2 cut(s)	98, 628
AlwI	GGATC	1 cut(s)	668
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	3 cut(s)	71, 335, 461
ApoI	RAATTY	2 cut(s)	63, 452
AspLEI	GCGC	1 cut(s)	169
BaeI	ACNNNNGTAYC	2 cut(s)	520, 553
BbsI	GAAGAC	1 cut(s)	552
BbvI	GCAGC	3 cut(s)	58, 322, 448
BccI	CCATC	2 cut(s)	14, 507
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	98, 628
BfaI	CTAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	4 cut(s)	5, 72, 336, 462
BlsI	GCNGC	4 cut(s)	6, 73, 337, 463
Bme1390I	CCNGG	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	652
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	2 cut(s)	216, 346
BpiI	GAAGAC	1 cut(s)	552
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BpuEI	CTTGAG	1 cut(s)	585
BsaAI	YACGTR	2 cut(s)	311, 428
BsaJI	CCNNGG	3 cut(s)	75, 99, 253
Bse1I	ACTGG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	3 cut(s)	75, 99, 253
BseGI	GGATG	2 cut(s)	25, 207
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	3 cut(s)	58, 322, 448
BseYI	CCCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	391
BsmAI	GTCTC	2 cut(s)	98, 628
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	660
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	2 cut(s)	4, 532
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	484
BspHI	TCATGA	2 cut(s)	54, 502
BspLI	GGNNCC	1 cut(s)	652
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	3 cut(s)	75, 99, 253
BssMI	GATC	1 cut(s)	660
BssT1I	CCWWGG	2 cut(s)	75, 253
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	8 cut(s)	85, 191, 226, 382, 424, 468, 632, 676
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstBAI	YACGTR	2 cut(s)	311, 428
BstDEI	CTNAG	2 cut(s)	492, 564
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	25, 207
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	2 cut(s)	98, 628
BstMBI	GATC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	58, 322, 448
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	1 cut(s)	660
BstYI	RGATCY	1 cut(s)	660
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	25, 207
BtsIMutI	CAGTG	2 cut(s)	81, 420
BveI	ACCTGC	1 cut(s)	350
CciI	TCATGA	2 cut(s)	54, 502
CfoI	GCGC	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	308, 425, 633
CviAII	CATG	4 cut(s)	55, 76, 405, 503
CviJI	RGCY	8 cut(s)	51, 71, 148, 215, 461, 479, 586, 693
CviKI_1	RGCY	8 cut(s)	51, 71, 148, 215, 461, 479, 586, 693
CviQI	GTAC	3 cut(s)	308, 425, 633
DdeI	CTNAG	2 cut(s)	492, 564
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
Eco130I	CCWWGG	2 cut(s)	75, 253
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	75, 253
ErhI	CCWWGG	2 cut(s)	75, 253
FaeI	CATG	4 cut(s)	58, 79, 408, 506
FaiI	YATR	9 cut(s)	56, 77, 134, 144, 162, 368, 390, 406, 504
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	4 cut(s)	54, 75, 404, 502
Fnu4HI	GCNGC	4 cut(s)	5, 72, 336, 462
FokI	GGATG	2 cut(s)	32, 194
Fsp4HI	GCNGC	4 cut(s)	5, 72, 336, 462
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	4 cut(s)	5, 72, 336, 462
GsaI	CCCAGC	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	58, 79, 408, 506
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	246, 607
Hpy188I	TCNGA	4 cut(s)	355, 451, 628, 669
Hpy188III	TCNNGA	3 cut(s)	55, 115, 503
Hpy8I	GTNNAC	2 cut(s)	246, 607
HpyCH4III	ACNGT	8 cut(s)	85, 191, 226, 382, 424, 468, 632, 676
HpyCH4IV	ACGT	2 cut(s)	310, 427
HpyCH4V	TGCA	5 cut(s)	28, 305, 359, 464, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	2 cut(s)	492, 564
HpySE526I	ACGT	2 cut(s)	310, 427
Hsp92II	CATG	4 cut(s)	58, 79, 408, 506
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	660
LpnPI	CCDG	6 cut(s)	85, 112, 128, 225, 345, 534
Lsp1109I	GCAGC	3 cut(s)	58, 322, 448
LweI	GCATC	2 cut(s)	216, 346
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	2 cut(s)	310, 427
MaeIII	GTNAC	4 cut(s)	220, 226, 487, 574
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MboII	GAAGA	1 cut(s)	557
MflI	RGATCY	1 cut(s)	660
MluCI	AATT	6 cut(s)	63, 139, 170, 263, 369, 452
MnlI	CCTC	5 cut(s)	62, 251, 609, 637, 640
MseI	TTAA	2 cut(s)	348, 639
MspA1I	CMGCKG	2 cut(s)	215, 534
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	311
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	660
NlaIII	CATG	4 cut(s)	58, 79, 408, 506
NlaIV	GGNNCC	1 cut(s)	652
NmuCI	GTSAC	2 cut(s)	220, 574
PagI	TCATGA	2 cut(s)	54, 502
PaqCI	CACCTGC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	446
PflFI	GACNNNGTC	1 cut(s)	611
PkrI	GCNGC	4 cut(s)	6, 73, 337, 463
Ppu21I	YACGTR	2 cut(s)	311, 428
PsiI	TTATAA	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	660
PsyI	GACNNNGTC	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	3 cut(s)	309, 426, 634
RsaNI	GTAC	3 cut(s)	308, 425, 633
SaqAI	TTAA	2 cut(s)	348, 639
SatI	GCNGC	4 cut(s)	5, 72, 336, 462
Sau3AI	GATC	1 cut(s)	660
ScrFI	CCNGG	1 cut(s)	100
SfaNI	GCATC	2 cut(s)	216, 346
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
Sse9I	AATT	6 cut(s)	63, 139, 170, 263, 369, 452
SsiI	CCGC	2 cut(s)	4, 532
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	2 cut(s)	75, 253
TaaI	ACNGT	8 cut(s)	85, 191, 226, 382, 424, 468, 632, 676
TaiI	ACGT	2 cut(s)	313, 430
TasI	AATT	6 cut(s)	63, 139, 170, 263, 369, 452
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	2 cut(s)	348, 639
Tru9I	TTAA	2 cut(s)	348, 639
TscAI	CASTG	2 cut(s)	88, 427
TseFI	GTSAC	2 cut(s)	220, 574
TseI	GCWGC	3 cut(s)	71, 335, 461
Tsp45I	GTSAC	2 cut(s)	220, 574
TspDTI	ATGAA	5 cut(s)	71, 75, 149, 222, 393
TspRI	CASTG	2 cut(s)	88, 427
Tth111I	GACNNNGTC	1 cut(s)	611
XapI	RAATTY	2 cut(s)	63, 452
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.