Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

10138442 .. 10139863

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATGGAGGAGAAGGACAGAGAAATTTCTAGACTTGTAGATGATAATAAGAACCTTCATCAATCTTTGGAGTCAAGACCAAAGGTTGATCATAACGATAATTATAGCACAGGCATGTATAAACAGGATCCATCAAGTTTAAGCACCTCTGCGTTAGAACAGCAGATTCTGATTCTGGCAAGGCAACAAGCGCAAAGAGAGGAAGAGCTAGCACAGTCACAGAGGCACATTTTAGCGCTTCAAGAGGAAATTGAGGAGCTGGAGCATGAAAATCGTCTGCATAGCCAACAGGAAACAATGTTGAAGACTGAGCTTCGCAACATGGAAAGATCACAGAAGAGGGAAGGAGTAGATATGACTTACCTCAAAATGTTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

126

Amino Acids

15.01

Weight (kDa)

5.13

Isoelectric Point (pI)

86.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	122, 135
AcsI	RAATTY	1 cut(s)	24
AfeI	AGCGCT	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	242, 304
AluBI	AGCT	3 cut(s)	208, 259, 313
AluI	AGCT	3 cut(s)	208, 259, 313
AlwI	GGATC	2 cut(s)	122, 135
AlwNI	CAGNNNCTG	1 cut(s)	169
Aor51HI	AGCGCT	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	193, 238
AsuNHI	GCTAGC	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	311
BccI	CCATC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BclI	TGATCA	1 cut(s)	88
BfaI	CTAG	2 cut(s)	30, 209
BfoI	RGCGCY	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	129
BmtI	GCTAGC	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	23, 269
Bsp143I	GATC	3 cut(s)	88, 127, 329
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	129
BspOI	GCTAGC	1 cut(s)	212
BspPI	GGATC	2 cut(s)	122, 135
BspQI	GCTCTTC	1 cut(s)	198
BssMI	GATC	3 cut(s)	88, 127, 329
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	2 cut(s)	198, 332
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	193, 238
BstKTI	GATC	3 cut(s)	91, 130, 332
BstMBI	GATC	3 cut(s)	88, 127, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	2 cut(s)	193, 238
CviAII	CATG	3 cut(s)	115, 266, 322
CviJI	RGCY	4 cut(s)	208, 259, 285, 313
CviKI_1	RGCY	4 cut(s)	208, 259, 285, 313
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	3 cut(s)	90, 129, 331
DpnII	GATC	3 cut(s)	88, 127, 329
Eam1104I	CTCTTC	2 cut(s)	198, 332
EarI	CTCTTC	2 cut(s)	198, 332
Eco47III	AGCGCT	1 cut(s)	237
FaeI	CATG	3 cut(s)	118, 269, 325
FaiI	YATR	9 cut(s)	93, 105, 116, 120, 267, 282, 323, 356, 376
FatI	CATG	3 cut(s)	114, 265, 321
FbaI	TGATCA	1 cut(s)	88
FspBI	CTAG	2 cut(s)	30, 209
GlaI	GCGC	2 cut(s)	192, 237
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	239
HhaI	GCGC	2 cut(s)	193, 238
Hin1II	CATG	3 cut(s)	118, 269, 325
Hin6I	GCGC	2 cut(s)	191, 236
HinP1I	GCGC	2 cut(s)	191, 236
HinfI	GANTC	3 cut(s)	71, 166, 172
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	3 cut(s)	30, 75, 242
HpyAV	CCTTC	3 cut(s)	7, 65, 338
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	118, 269, 325
HspAI	GCGC	2 cut(s)	191, 236
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	88, 127, 329
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	2 cut(s)	256, 262
LpnPI	CCDG	5 cut(s)	96, 110, 161, 245, 275
MaeI	CTAG	2 cut(s)	30, 209
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	3 cut(s)	90, 129, 331
MboI	GATC	3 cut(s)	88, 127, 329
MboII	GAAGA	3 cut(s)	215, 316, 349
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	3 cut(s)	24, 100, 249
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	157, 193, 216, 238, 247, 333, 374
MseI	TTAA	2 cut(s)	140, 379
MslI	CAYNNNNRTG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	190
NdeII	GATC	3 cut(s)	88, 127, 329
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	118, 269, 325
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	166, 172
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	140, 379
Sau3AI	GATC	3 cut(s)	88, 127, 329
SchI	GAGTC	1 cut(s)	80
SetI	ASST	7 cut(s)	57, 87, 149, 210, 261, 315, 366
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	24, 100, 249
SspMI	CTAG	2 cut(s)	30, 209
TaaI	ACNGT	1 cut(s)	216
TasI	AATT	3 cut(s)	24, 100, 249
TfiI	GAWTC	2 cut(s)	166, 172
Tru1I	TTAA	2 cut(s)	140, 379
Tru9I	TTAA	2 cut(s)	140, 379
TseFI	GTSAC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	47, 282
XapI	RAATTY	1 cut(s)	24
XbaI	TCTAGA	1 cut(s)	29
XceI	RCATGY	1 cut(s)	118
XspI	CTAG	2 cut(s)	30, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.