protein binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G39020 |
| fragaria_vesca | FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182 |
| malus_domestica | MD05G1056500.v1.1 MD10G1064500.v1.1 |
| prunus_persica | Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1 |
| pyrus_communis | pycom05g04810 pycom10g05040 |
| rosa_chinensis | RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341 |
| rosa_laevigata | RLG00000014014 |
| rosa_multiflora | Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00266630 Rroxscaffold_7G00200930 |
| rosa_rugosa | Rorug02G0109200 Rorug06G0031400 |
| rosa_samantha | Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400 |
| rosa_wichuraiana | Rw6G013190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 61 |
| AgsI | TTSAA | 1 cut(s) | 89 |
| AluBI | AGCT | 2 cut(s) | 71, 214 |
| AluI | AGCT | 2 cut(s) | 71, 214 |
| ApeKI | GCWGC | 5 cut(s) | 158, 211, 214, 217, 226 |
| AspLEI | GCGC | 1 cut(s) | 14 |
| BbvI | GCAGC | 5 cut(s) | 170, 201, 223, 229, 238 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BfaI | CTAG | 1 cut(s) | 152 |
| BfmI | CTRYAG | 1 cut(s) | 215 |
| BfoI | RGCGCY | 1 cut(s) | 15 |
| BisI | GCNGC | 6 cut(s) | 62, 159, 212, 215, 218, 227 |
| BlsI | GCNGC | 6 cut(s) | 63, 160, 213, 216, 219, 228 |
| BmrI | ACTGGG | 1 cut(s) | 208 |
| BmsI | GCATC | 2 cut(s) | 16, 43 |
| BmuI | ACTGGG | 1 cut(s) | 208 |
| Bse1I | ACTGG | 1 cut(s) | 203 |
| BseGI | GGATG | 1 cut(s) | 28 |
| BseMII | CTCAG | 1 cut(s) | 92 |
| BseNI | ACTGG | 1 cut(s) | 203 |
| BseXI | GCAGC | 5 cut(s) | 170, 201, 223, 229, 238 |
| BsmI | GAATGC | 1 cut(s) | 63 |
| BspACI | CCGC | 1 cut(s) | 61 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BspMAI | CTGCAG | 1 cut(s) | 219 |
| BsrI | ACTGG | 1 cut(s) | 203 |
| BstDEI | CTNAG | 1 cut(s) | 78 |
| BstF5I | GGATG | 1 cut(s) | 28 |
| BstH2I | RGCGCY | 1 cut(s) | 15 |
| BstHHI | GCGC | 1 cut(s) | 14 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 164, 217, 223, 226, 235 |
| BstSFI | CTRYAG | 1 cut(s) | 215 |
| BstV1I | GCAGC | 5 cut(s) | 170, 201, 223, 229, 238 |
| BtsCI | GGATG | 1 cut(s) | 28 |
| BtsI | GCAGTG | 1 cut(s) | 227 |
| BtsIMutI | CAGTG | 1 cut(s) | 227 |
| CfoI | GCGC | 1 cut(s) | 14 |
| CseI | GACGC | 1 cut(s) | 173 |
| CviJI | RGCY | 4 cut(s) | 71, 83, 214, 238 |
| CviKI_1 | RGCY | 4 cut(s) | 71, 83, 214, 238 |
| DdeI | CTNAG | 1 cut(s) | 78 |
| Eco32I | GATATC | 1 cut(s) | 50 |
| EcoRV | GATATC | 1 cut(s) | 50 |
| FaiI | YATR | 2 cut(s) | 146, 190 |
| Fnu4HI | GCNGC | 6 cut(s) | 62, 159, 212, 215, 218, 227 |
| FokI | GGATG | 1 cut(s) | 35 |
| Fsp4HI | GCNGC | 6 cut(s) | 62, 159, 212, 215, 218, 227 |
| FspBI | CTAG | 1 cut(s) | 152 |
| GlaI | GCGC | 1 cut(s) | 13 |
| GluI | GCNGC | 6 cut(s) | 62, 159, 212, 215, 218, 227 |
| HaeII | RGCGCY | 1 cut(s) | 15 |
| HgaI | GACGC | 1 cut(s) | 173 |
| HhaI | GCGC | 1 cut(s) | 14 |
| Hin6I | GCGC | 1 cut(s) | 12 |
| HinP1I | GCGC | 1 cut(s) | 12 |
| HinfI | GANTC | 1 cut(s) | 74 |
| Hpy188I | TCNGA | 1 cut(s) | 136 |
| HpyAV | CCTTC | 1 cut(s) | 198 |
| HpyCH4V | TGCA | 2 cut(s) | 175, 217 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 164, 217, 223, 226, 235 |
| HpyF3I | CTNAG | 1 cut(s) | 78 |
| HspAI | GCGC | 1 cut(s) | 12 |
| LmnI | GCTCC | 1 cut(s) | 19 |
| LpnPI | CCDG | 2 cut(s) | 65, 184 |
| Lsp1109I | GCAGC | 5 cut(s) | 170, 201, 223, 229, 238 |
| LweI | GCATC | 2 cut(s) | 16, 43 |
| MaeI | CTAG | 1 cut(s) | 152 |
| MluCI | AATT | 1 cut(s) | 130 |
| MnlI | CCTC | 2 cut(s) | 108, 228 |
| MspA1I | CMGCKG | 1 cut(s) | 214 |
| Mva1269I | GAATGC | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 164, 217, 223, 226, 235 |
| NmeAIII | GCCGAG | 1 cut(s) | 10 |
| PctI | GAATGC | 1 cut(s) | 63 |
| PfeI | GAWTC | 1 cut(s) | 74 |
| PkrI | GCNGC | 6 cut(s) | 63, 160, 213, 216, 219, 228 |
| PstI | CTGCAG | 1 cut(s) | 219 |
| PvuII | CAGCTG | 1 cut(s) | 214 |
| SatI | GCNGC | 6 cut(s) | 62, 159, 212, 215, 218, 227 |
| SetI | ASST | 2 cut(s) | 73, 216 |
| SfaNI | GCATC | 2 cut(s) | 16, 43 |
| SfcI | CTRYAG | 1 cut(s) | 215 |
| SgeI | CNNG | 9 cut(s) | 42, 50, 77, 92, 135, 137, 164, 188, 211 |
| Sse9I | AATT | 1 cut(s) | 130 |
| SsiI | CCGC | 1 cut(s) | 61 |
| SspMI | CTAG | 1 cut(s) | 152 |
| TaqI | TCGA | 1 cut(s) | 184 |
| TasI | AATT | 1 cut(s) | 130 |
| TauI | GCSGC | 1 cut(s) | 64 |
| TfiI | GAWTC | 1 cut(s) | 74 |
| TscAI | CASTG | 1 cut(s) | 227 |
| TseI | GCWGC | 5 cut(s) | 158, 211, 214, 217, 226 |
| TspDTI | ATGAA | 1 cut(s) | 161 |
| TspRI | CASTG | 1 cut(s) | 227 |
| XspI | CTAG | 1 cut(s) | 152 |