Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Reverse (-)

14995711 .. 14996397

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGTCCAATAGGGAACAAGAAAAAAGATAATGCTCTTCAGAGAGCTAATGCTTTCAAATCTGTAAAACCTTCTTTCGTGGTTGCAATGCATCCCACTTATGTCTGTGGAGGTATTTTGAATTTGCCATGTGGTTTTGCCAAGAAACATCTTACTGAGAGGCCTAATCACGTGAGCCTGCAGGATTCAAATGGGAAAATTTGGTCTGTCAATATCCATTTCAGCAACCAAGCTAGCTTCCGCAGTGGTTGGACTGACTTTGTGCGAGGCAATAATTTTGAAGAAGGTGATGCGTGTGCCTTTGAGTTGATTAAGAAGAGCAAGTTTTTATTTGACGTTCACTTTTTCCGCACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

119

Amino Acids

13.42

Weight (kDa)

9.62

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	29 - 118	9.2e-16	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	241, 349
AcsI	RAATTY	2 cut(s)	121, 198
AcuI	CTGAAG	1 cut(s)	23
AcvI	CACGTG	1 cut(s)	172
AgsI	TTSAA	4 cut(s)	58, 121, 189, 281
AluBI	AGCT	3 cut(s)	47, 233, 237
AluI	AGCT	3 cut(s)	47, 233, 237
AoxI	GGCC	1 cut(s)	161
ApoI	RAATTY	2 cut(s)	121, 198
AsuHPI	GGTGA	1 cut(s)	299
AsuNHI	GCTAGC	1 cut(s)	233
BbrPI	CACGTG	1 cut(s)	172
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	100, 280
BmtI	GCTAGC	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	163
BspACI	CCGC	2 cut(s)	241, 349
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	183
BspOI	GCTAGC	1 cut(s)	237
BspQI	GCTCTTC	2 cut(s)	42, 311
BsrDI	GCAATG	1 cut(s)	93
Bst6I	CTCTTC	2 cut(s)	42, 311
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	179, 235
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	179, 235
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	5 cut(s)	47, 163, 177, 233, 237
CviKI_1	RGCY	5 cut(s)	47, 163, 177, 233, 237
DdeI	CTNAG	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	42, 311
EarI	CTCTTC	2 cut(s)	42, 311
Eco147I	AGGCCT	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	23
Eco72I	CACGTG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	93
FaeI	CATG	1 cut(s)	132
FaiI	YATR	3 cut(s)	102, 130, 358
FatI	CATG	1 cut(s)	128
FokI	GGATG	1 cut(s)	78
FspBI	CTAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	132
HinfI	GANTC	2 cut(s)	4, 185
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	81, 278
HpyCH4IV	ACGT	2 cut(s)	171, 336
HpyCH4V	TGCA	3 cut(s)	86, 91, 181
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	2 cut(s)	171, 336
Hsp92II	CATG	1 cut(s)	132
LguI	GCTCTTC	2 cut(s)	42, 311
LpnPI	CCDG	2 cut(s)	167, 191
LweI	GCATC	2 cut(s)	100, 280
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	2 cut(s)	171, 336
MboII	GAAGA	3 cut(s)	29, 293, 328
MluCI	AATT	3 cut(s)	121, 198, 274
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	3 cut(s)	104, 153, 260
Mph1103I	ATGCAT	1 cut(s)	93
MseI	TTAA	1 cut(s)	312
NheI	GCTAGC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	163
PciSI	GCTCTTC	2 cut(s)	42, 311
PfeI	GAWTC	1 cut(s)	185
PleI	GAGTC	1 cut(s)	12
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	183
SapI	GCTCTTC	2 cut(s)	42, 311
SaqAI	TTAA	1 cut(s)	312
SbfI	CCTGCAGG	1 cut(s)	183
SchI	GAGTC	1 cut(s)	13
SdaI	CCTGCAGG	1 cut(s)	183
SetI	ASST	8 cut(s)	49, 73, 115, 174, 235, 239, 289, 339
SfaNI	GCATC	2 cut(s)	100, 280
SfcI	CTRYAG	1 cut(s)	179
Sse8387I	CCTGCAGG	1 cut(s)	183
Sse9I	AATT	3 cut(s)	121, 198, 274
SseBI	AGGCCT	1 cut(s)	163
SsiI	CCGC	2 cut(s)	241, 349
SspMI	CTAG	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	163
TaiI	ACGT	2 cut(s)	174, 339
TasI	AATT	3 cut(s)	121, 198, 274
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	250
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	2 cut(s)	121, 198
XspI	CTAG	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.