Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Forward (+)

77973316 .. 77977738

Gene Structure 4423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGCAAGAAAATGGTGTAAAGGATCATTCTCCACGGGCTAGTCCTCCACTGCCTCAAAAGAAGAAAGAAGCAACTTCAAGTGGTGGGAAAAAGGATCTTTCTGCTGAAAACGATGAGGGAGGCAAGTCAAGTACTACTCAAAGATCCCAAAAACCAACAACCGAGGTACCTATGAGGATGCACTCCTCGGCTACAGGTGGAAAAGCTACAGCTCTTCAGAGAGCTAAAGAATTCAAGTCTAGAAACCCTTCCTGTTTCTTGGTTATCATGCACACCTCATATATCAAAGGAACTATGCTCTGGCTGTCAACTGAGATCTCCATGAATATGTTGACATATCTTGGTAAGAATTCTGGTAATGTTAGCCTTAGTGTTTTGGAAGGGAATACAAGGGGACTTTGGACTGTTGAAATGAAATATGATACAGAAAGAGCCACATTCCGGTTGCAGAGTGGTTGGAATAAATTTGTTCAAGGAAATAATTTGAATGCTGGTGATGTTTGTGGTTTTATGTTAATTGACGAAATTGGACTTTTATTTGAAGTTAATATTTTCCGCAGAACAGAAGTTGCAACCTCATCACCAGGCTATGATGAATATGATGTGGATGATAAAGATGACCATGGGCTTCATGATGCCAATGATGACTATGCAGCTGATGAAAACAGGCACCGTTCTTTCAGAACTGTCCTACTGAAGTCTTCTATCAGTCATTGTTTGTGGTTATGTTCTAGATTTTCTCAGAAACATCTCAGTGATAAGCCTAGTAATGCCAAGCTGCATGTTCCTGGTGGGAGGACAACTTGGTGTGTTGGATTGAAATATGAGGTTGGGAGAAAAAGAGCCAAATTTCAGTCTGGTTGGACCAAGTTTGTGAAAGACAATAATTTGAACATTGGAGATGAGTGTGTGTTTGTGTTGACTGATGAAAATATATTTTCATTTGAAGTTGTCATAGTAGCTGCAAAATCCACCTTGCCACCAGACATTGATGATGCTAATGACAACATCAAAGATGATGAGGATAATAAGAATGAGGATGATGATGATACTAGTGATGATGATTATAGTGATGATGAAGGTGATCATTCTGATGATGACAACGACCACAGCGATGAAGATGATGAATATTCAACAGCACAACAGCTTCACAAGAGAAAGAGGTCAAGTTCAAGTACCAAAAGTAGCATCAGAGATGTTGGTGCTTTGACTAGTACTGGACAATTTTTAAAACGACGACCTGGTGTTCCAAGGAGTATGCATCCAATAAGGACCACGAAAAATGATATAGTTCTTCAGAGAGCTAAAGTCTTCAAGTATGTAGAACCTCATTTTGTGGTTCCAATCACTGCCAGAAATGTCCACGAATCTTTTCTTAAGTTGCCATCTGCTTTTGTCCAGAAACATCTTGATAAGAGGCCTAGTCATGTCAGCCTGTGGGGTTCAAATGACATATATTGGCCTGTCGAGTTACATTTCAGCAAAGGTGCTACCTTCCAGGGCGGTTGGATTGAATTTGTGCAATGCCATAATCTGAAAGAGGGTGATGCATGTGGCTTTGAGTTGACTGAGAAGAGAAAGTTTCTGTTTGATGTTCACATTTTCCGCACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

538

Amino Acids

60.74

Weight (kDa)

6.07

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	114 - 187	8.8e-11	B3 DNA binding domain
B3	PF02362	229 - 319	1.4e-13	B3 DNA binding domain
B3	PF02362	449 - 537	5.1e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	166
AccB1I	GGYRCC	2 cut(s)	166, 669
AciI	CCGC	3 cut(s)	556, 1503, 1606
AclWI	GGATC	3 cut(s)	30, 102, 138
AcsI	RAATTY	5 cut(s)	230, 349, 464, 848, 1514
AcuI	CTGAAG	3 cut(s)	200, 716, 1280
AfaI	GTAC	4 cut(s)	133, 168, 1177, 1216
AfiI	CCNNNNNNNGG	1 cut(s)	441
AflII	CTTAAG	1 cut(s)	1376
AhlI	ACTAGT	2 cut(s)	1052, 1211
AjnI	CCWGG	4 cut(s)	583, 787, 1240, 1497
AluBI	AGCT	8 cut(s)	206, 212, 224, 656, 778, 962, 1147, 1304
AluI	AGCT	8 cut(s)	206, 212, 224, 656, 778, 962, 1147, 1304
AlwI	GGATC	3 cut(s)	30, 102, 138
AoxI	GGCC	2 cut(s)	1418, 1460
ApeKI	GCWGC	3 cut(s)	653, 778, 962
ApoI	RAATTY	5 cut(s)	230, 349, 464, 848, 1514
Asp700I	GAANNNNTTC	2 cut(s)	247, 1371
Asp718I	GGTACC	1 cut(s)	166
AspS9I	GGNCC	2 cut(s)	864, 1272
AsuHPI	GGTGA	4 cut(s)	506, 573, 1094, 1556
AvaII	GGWCC	2 cut(s)	864, 1272
BaeI	ACNNNNGTAYC	2 cut(s)	150, 183
BanI	GGYRCC	2 cut(s)	166, 669
BbsI	GAAGAC	2 cut(s)	693, 1303
BbvI	GCAGC	3 cut(s)	665, 765, 949
BccI	CCATC	1 cut(s)	1393
BciT130I	CCWGG	4 cut(s)	585, 789, 1242, 1499
BclI	TGATCA	1 cut(s)	1084
BcuI	ACTAGT	2 cut(s)	1052, 1211
BfaI	CTAG	7 cut(s)	39, 240, 732, 765, 1053, 1212, 1422
BfmI	CTRYAG	2 cut(s)	192, 207
BfrI	CTTAAG	1 cut(s)	1376
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	3 cut(s)	654, 779, 963
BlsI	GCNGC	3 cut(s)	655, 780, 964
BmcAI	AGTACT	2 cut(s)	133, 1216
Bme1390I	CCNGG	4 cut(s)	585, 789, 1242, 1499
Bme18I	GGWCC	2 cut(s)	864, 1272
BmgT120I	GGNCC	2 cut(s)	864, 1272
BmiI	GGNNCC	3 cut(s)	168, 671, 1341
BmrFI	CCNGG	4 cut(s)	585, 789, 1242, 1499
BmsI	GCATC	6 cut(s)	168, 625, 985, 1197, 1270, 1537
BpiI	GAAGAC	2 cut(s)	693, 1303
BsaJI	CCNNGG	6 cut(s)	32, 162, 186, 622, 1250, 1498
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	1222
Bse3DI	GCAATG	1 cut(s)	1529
BseBI	CCWGG	4 cut(s)	585, 789, 1242, 1499
BseDI	CCNNGG	6 cut(s)	32, 162, 186, 622, 1250, 1498
BseGI	GGATG	4 cut(s)	183, 613, 1045, 1261
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMI	GCAATG	1 cut(s)	1529
BseMII	CTCAG	4 cut(s)	303, 755, 766, 1560
BseNI	ACTGG	1 cut(s)	1222
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	665, 765, 949
BshFI	GGCC	2 cut(s)	1420, 1462
BshNI	GGYRCC	2 cut(s)	166, 669
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	1420, 1462
Bsp143I	GATC	5 cut(s)	22, 94, 143, 315, 1084
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	3 cut(s)	556, 1503, 1606
BspANI	GGCC	2 cut(s)	1420, 1462
BspCNI	CTCAG	4 cut(s)	304, 754, 765, 1561
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	3 cut(s)	168, 671, 1341
BspPI	GGATC	3 cut(s)	30, 102, 138
BspQI	GCTCTTC	1 cut(s)	219
BspT107I	GGYRCC	2 cut(s)	166, 669
BspTI	CTTAAG	1 cut(s)	1376
BsrDI	GCAATG	1 cut(s)	1529
BsrI	ACTGG	1 cut(s)	1222
BssECI	CCNNGG	6 cut(s)	32, 162, 186, 622, 1250, 1498
BssMI	GATC	5 cut(s)	22, 94, 143, 315, 1084
BssT1I	CCWWGG	2 cut(s)	622, 1250
Bst2UI	CCWGG	4 cut(s)	585, 789, 1242, 1499
Bst4CI	ACNGT	3 cut(s)	406, 674, 688
Bst6I	CTCTTC	2 cut(s)	219, 1568
BstAFI	CTTAAG	1 cut(s)	1376
BstDEI	CTNAG	5 cut(s)	312, 368, 741, 752, 1569
BstDSI	CCRYGG	2 cut(s)	32, 622
BstF5I	GGATG	4 cut(s)	183, 613, 1045, 1261
BstKTI	GATC	5 cut(s)	25, 97, 146, 318, 1087
BstMBI	GATC	5 cut(s)	22, 94, 143, 315, 1084
BstNI	CCWGG	4 cut(s)	585, 789, 1242, 1499
BstNSI	RCATGY	2 cut(s)	785, 1554
BstSCI	CCNGG	4 cut(s)	583, 787, 1240, 1497
BstSFI	CTRYAG	2 cut(s)	192, 207
BstV1I	GCAGC	3 cut(s)	665, 765, 949
BstV2I	GAAGAC	2 cut(s)	693, 1303
BstX2I	RGATCY	3 cut(s)	94, 143, 315
BstYI	RGATCY	3 cut(s)	94, 143, 315
BsuRI	GGCC	2 cut(s)	1420, 1462
BtgI	CCRYGG	2 cut(s)	32, 622
BtgZI	GCGATG	1 cut(s)	1128
BtsCI	GGATG	4 cut(s)	183, 613, 1045, 1261
BtsI	GCAGTG	2 cut(s)	47, 1347
BtsIMutI	CAGTG	3 cut(s)	47, 760, 1347
CciI	TCATGA	1 cut(s)	631
Cfr13I	GGNCC	2 cut(s)	864, 1272
CsiI	ACCWGGT	1 cut(s)	1240
Csp6I	GTAC	4 cut(s)	132, 167, 1176, 1215
CviAII	CATG	7 cut(s)	268, 322, 623, 632, 782, 1427, 1551
CviQI	GTAC	4 cut(s)	132, 167, 1176, 1215
DdeI	CTNAG	5 cut(s)	312, 368, 741, 752, 1569
DpnI	GATC	5 cut(s)	24, 96, 145, 317, 1086
DpnII	GATC	5 cut(s)	22, 94, 143, 315, 1084
DraI	TTTAAA	1 cut(s)	1230
Eam1104I	CTCTTC	2 cut(s)	219, 1568
EarI	CTCTTC	2 cut(s)	219, 1568
Eco130I	CCWWGG	2 cut(s)	622, 1250
Eco147I	AGGCCT	1 cut(s)	1420
Eco47I	GGWCC	2 cut(s)	864, 1272
Eco57I	CTGAAG	3 cut(s)	200, 716, 1280
EcoRI	GAATTC	2 cut(s)	230, 349
EcoRII	CCWGG	4 cut(s)	583, 787, 1240, 1497
EcoT14I	CCWWGG	2 cut(s)	622, 1250
EcoT22I	ATGCAT	2 cut(s)	1263, 1552
ErhI	CCWWGG	2 cut(s)	622, 1250
FaeI	CATG	7 cut(s)	271, 325, 626, 635, 785, 1430, 1554
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	7 cut(s)	267, 321, 622, 631, 781, 1426, 1550
FbaI	TGATCA	1 cut(s)	1084
Fnu4HI	GCNGC	3 cut(s)	654, 779, 963
FokI	GGATG	4 cut(s)	190, 620, 1052, 1248
Fsp4HI	GCNGC	3 cut(s)	654, 779, 963
FspBI	CTAG	7 cut(s)	39, 240, 732, 765, 1053, 1212, 1422
GluI	GCNGC	3 cut(s)	654, 779, 963
HaeIII	GGCC	2 cut(s)	1420, 1462
HapII	CCGG	1 cut(s)	442
Hin1II	CATG	7 cut(s)	271, 325, 626, 635, 785, 1430, 1554
HincII	GTYRAC	4 cut(s)	309, 333, 921, 1566
HindII	GTYRAC	4 cut(s)	309, 333, 921, 1566
HinfI	GANTC	1 cut(s)	1367
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	4 cut(s)	506, 573, 1094, 1556
Hpy166II	GTNNAC	6 cut(s)	309, 333, 921, 1363, 1566, 1597
Hpy188I	TCNGA	7 cut(s)	219, 683, 744, 1093, 1193, 1299, 1536
Hpy188III	TCNNGA	5 cut(s)	240, 632, 732, 1399, 1409
Hpy8I	GTNNAC	6 cut(s)	309, 333, 921, 1363, 1566, 1597
Hpy99I	CGWCG	1 cut(s)	1239
HpyAV	CCTTC	4 cut(s)	258, 374, 1073, 1504
HpyCH4III	ACNGT	3 cut(s)	406, 674, 688
HpyF3I	CTNAG	5 cut(s)	312, 368, 741, 752, 1569
Hsp92II	CATG	7 cut(s)	271, 325, 626, 635, 785, 1430, 1554
KpnI	GGTACC	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	1084
Kzo9I	GATC	5 cut(s)	22, 94, 143, 315, 1084
LguI	GCTCTTC	1 cut(s)	219
Lsp1109I	GCAGC	3 cut(s)	665, 765, 949
LweI	GCATC	6 cut(s)	168, 625, 985, 1197, 1270, 1537
MabI	ACCWGGT	1 cut(s)	1240
MaeI	CTAG	7 cut(s)	39, 240, 732, 765, 1053, 1212, 1422
MaeIII	GTNAC	1 cut(s)	1470
MalI	GATC	5 cut(s)	24, 96, 145, 317, 1086
MboI	GATC	5 cut(s)	22, 94, 143, 315, 1084
MboII	GAAGA	7 cut(s)	73, 206, 693, 1130, 1286, 1303, 1585
MflI	RGATCY	3 cut(s)	94, 143, 315
MmeI	TCCRAC	4 cut(s)	437, 793, 842, 1487
Mph1103I	ATGCAT	2 cut(s)	1263, 1552
MroXI	GAANNNNTTC	2 cut(s)	247, 1371
MseI	TTAA	4 cut(s)	515, 546, 1229, 1377
MslI	CAYNNNNRTG	4 cut(s)	326, 753, 1092, 1113
MspA1I	CMGCKG	1 cut(s)	656
MspCI	CTTAAG	1 cut(s)	1376
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	4 cut(s)	585, 789, 1242, 1499
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	4 cut(s)	585, 789, 1242, 1499
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	5 cut(s)	22, 94, 143, 315, 1084
NlaIII	CATG	7 cut(s)	271, 325, 626, 635, 785, 1430, 1554
NlaIV	GGNNCC	3 cut(s)	168, 671, 1341
NmeAIII	GCCGAG	1 cut(s)	167
NsiI	ATGCAT	2 cut(s)	1263, 1552
NspI	RCATGY	2 cut(s)	785, 1554
PagI	TCATGA	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	1420
PciSI	GCTCTTC	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	1110
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	2 cut(s)	247, 1371
PfeI	GAWTC	1 cut(s)	1367
PkrI	GCNGC	3 cut(s)	655, 780, 964
Psp6I	CCWGG	4 cut(s)	583, 787, 1240, 1497
PspGI	CCWGG	4 cut(s)	583, 787, 1240, 1497
PspN4I	GGNNCC	3 cut(s)	168, 671, 1341
PspPI	GGNCC	2 cut(s)	864, 1272
PsuI	RGATCY	3 cut(s)	94, 143, 315
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	4 cut(s)	133, 168, 1177, 1216
RsaNI	GTAC	4 cut(s)	132, 167, 1176, 1215
RseI	CAYNNNNRTG	4 cut(s)	326, 753, 1092, 1113
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	4 cut(s)	515, 546, 1229, 1377
SatI	GCNGC	3 cut(s)	654, 779, 963
Sau3AI	GATC	5 cut(s)	22, 94, 143, 315, 1084
Sau96I	GGNCC	2 cut(s)	864, 1272
ScaI	AGTACT	2 cut(s)	133, 1216
ScrFI	CCNGG	4 cut(s)	585, 789, 1242, 1499
SexAI	ACCWGGT	1 cut(s)	1240
SfaNI	GCATC	6 cut(s)	168, 625, 985, 1197, 1270, 1537
SfcI	CTRYAG	2 cut(s)	192, 207
SinI	GGWCC	2 cut(s)	864, 1272
SmiMI	CAYNNNNRTG	4 cut(s)	326, 753, 1092, 1113
SmlI	CTYRAG	1 cut(s)	1376
SmoI	CTYRAG	1 cut(s)	1376
SpeI	ACTAGT	2 cut(s)	1052, 1211
SseBI	AGGCCT	1 cut(s)	1420
SsiI	CCGC	3 cut(s)	556, 1503, 1606
SspI	AATATT	2 cut(s)	550, 1130
SspMI	CTAG	7 cut(s)	39, 240, 732, 765, 1053, 1212, 1422
StuI	AGGCCT	1 cut(s)	1420
StyD4I	CCNGG	4 cut(s)	583, 787, 1240, 1497
StyI	CCWWGG	2 cut(s)	622, 1250
TaaI	ACNGT	3 cut(s)	406, 674, 688
TaqI	TCGA	1 cut(s)	1467
TatI	WGTACW	2 cut(s)	131, 1214
TfiI	GAWTC	1 cut(s)	1367
Tru1I	TTAA	4 cut(s)	515, 546, 1229, 1377
Tru9I	TTAA	4 cut(s)	515, 546, 1229, 1377
TscAI	CASTG	3 cut(s)	54, 760, 1354
TseI	GCWGC	3 cut(s)	653, 778, 962
TspRI	CASTG	3 cut(s)	54, 760, 1354
Vha464I	CTTAAG	1 cut(s)	1376
VpaK11BI	GGWCC	2 cut(s)	864, 1272
XapI	RAATTY	5 cut(s)	230, 349, 464, 848, 1514
XbaI	TCTAGA	2 cut(s)	239, 731
XceI	RCATGY	2 cut(s)	785, 1554
XmnI	GAANNNNTTC	2 cut(s)	247, 1371
XspI	CTAG	7 cut(s)	39, 240, 732, 765, 1053, 1212, 1422
ZrmI	AGTACT	2 cut(s)	133, 1216
Zsp2I	ATGCAT	2 cut(s)	1263, 1552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.