Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Reverse (-)

14769036 .. 14769797

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG169000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGACTTCTCTTTGCCGGAAGAAGGATCCTCGACAAAAGTTTTCTCCTACCAAATGCAGTTTCCTTAGGTCTATGTCGGAGGACAGTCCCACTACATACCTCAAAATTCCTAGGATTTATTTGAAGAAATGTCGGGAGAAATATGAAAAAGAGCTATCAAAGGATATACATCTTAAGCTTCCATGTGGTACAGAATGGAAAGTAGAAGTCACAGAACACAAAGGTCACTTTTGGTTCGAGAAGGGTTGGGAAGGTTTTTTCAAGTTTTACTCGCTACAGTCCAACGGCTCGATAGATTTTCAATATGAAGGGAATTCCAGATTCAAAGTTAAAATCTATGATAAATCAAAAATAGAGATCGACTATCCTATCAAAAGCACTGATATGCAAGAAAATGGTGTAAATGATCATTCTCCACTGGCTAGTCCTCAACAGCCTCAAAAGAAGAAAGAAGCAACTTCAAGTGGTGGTAATTACAATATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

162

Amino Acids

18.99

Weight (kDa)

9.23

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	26 - 115	7.1e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	20, 33
AcsI	RAATTY	2 cut(s)	105, 313
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	5 cut(s)	124, 262, 302, 325, 462
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	154, 178
AluI	AGCT	2 cut(s)	154, 178
AlwI	GGATC	2 cut(s)	20, 33
ApoI	RAATTY	2 cut(s)	105, 313
AspA2I	CCTAGG	1 cut(s)	110
AvrII	CCTAGG	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	301
BclI	TGATCA	1 cut(s)	406
BfaI	CTAG	2 cut(s)	111, 423
BfmI	CTRYAG	1 cut(s)	275
BfrI	CTTAAG	1 cut(s)	173
BlnI	CCTAGG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	423
Bse21I	CCTNAGG	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	110
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	72
Bsp143I	GATC	3 cut(s)	25, 357, 406
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	20, 33
BspTI	CTTAAG	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	3 cut(s)	25, 357, 406
BssT1I	CCWWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	86, 279
BstAFI	CTTAAG	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	65
BstKTI	GATC	3 cut(s)	28, 360, 409
BstMBI	GATC	3 cut(s)	25, 357, 406
BstSFI	CTRYAG	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	378, 416
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	5 cut(s)	154, 178, 288, 422, 436
CviKI_1	RGCY	5 cut(s)	154, 178, 288, 422, 436
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	3 cut(s)	27, 359, 408
DpnII	GATC	3 cut(s)	25, 357, 406
Eco130I	CCWWGG	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	1 cut(s)	186
FaiI	YATR	9 cut(s)	74, 97, 144, 167, 184, 306, 339, 386, 482
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	406
FspBI	CTAG	2 cut(s)	111, 423
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	3 cut(s)	134, 238, 318
HpyAV	CCTTC	4 cut(s)	16, 235, 245, 302
HpyCH4III	ACNGT	2 cut(s)	86, 279
HpyCH4V	TGCA	2 cut(s)	57, 388
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	25, 357, 406
LpnPI	CCDG	3 cut(s)	29, 331, 404
MaeI	CTAG	2 cut(s)	111, 423
MaeIII	GTNAC	2 cut(s)	208, 224
MalI	GATC	3 cut(s)	27, 359, 408
MboI	GATC	3 cut(s)	25, 357, 406
MboII	GAAGA	3 cut(s)	31, 136, 457
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	4 cut(s)	105, 313, 472, 484
MmeI	TCCRAC	2 cut(s)	57, 306
MnlI	CCTC	5 cut(s)	39, 73, 110, 438, 447
MseI	TTAA	3 cut(s)	174, 330, 487
MslI	CAYNNNNRTG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	16
NdeII	GATC	3 cut(s)	25, 357, 406
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	208, 224
PfeI	GAWTC	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	174, 330, 487
Sau3AI	GATC	3 cut(s)	25, 357, 406
SetI	ASST	6 cut(s)	71, 102, 156, 180, 226, 256
SfcI	CTRYAG	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	105, 313, 472, 484
SspMI	CTAG	2 cut(s)	111, 423
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	2 cut(s)	86, 279
TaqI	TCGA	4 cut(s)	31, 237, 290, 360
TasI	AATT	4 cut(s)	105, 313, 472, 484
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	3 cut(s)	174, 330, 487
Tru9I	TTAA	3 cut(s)	174, 330, 487
TscAI	CASTG	2 cut(s)	385, 423
TseFI	GTSAC	2 cut(s)	208, 224
Tsp45I	GTSAC	2 cut(s)	208, 224
TspDTI	ATGAA	2 cut(s)	159, 321
TspRI	CASTG	2 cut(s)	385, 423
Vha464I	CTTAAG	1 cut(s)	173
XapI	RAATTY	2 cut(s)	105, 313
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	2 cut(s)	111, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.