Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395735.1

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1042

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 782 bp

aatgggaagtagaagtcacaggtcacaatggtcacttctggttcgagaagggttgggaagatttttccaagttttactccctccagtcacacgactcgttggcttttcaatatgaagcaaattccagattcaaagttaacatctttgataaatcaaaaacagagattgactatcctatcaaaagccctaatatgcaagaaaatggtgtaaatgatcattctccaccggctagtcctccactgcctcaaaagaagagaggagcaacttcaagtggtgggaaaaaggatctttctgccgaaaaggatgagggagggaagtcaagtactactcaaagatcccaaaaaccaacaaccgaggttcctatgaggatgcactcctcggctacaggtggaaaagctacagctcttcagagagctaaagaattcaagtctagaaacccttcctgcttcttggttatcatgcacgcctcatatatcaaaggaactatgctttggctgtcagctgagatctccatgaatatgttgacatatcttggcaagaattctggtaatgttagccttagtgtttcggaagggagtacaaggggactttggactgttgaaatgaaatatgatacagaaagagccacattccggttgcagagtggttggaataaatttgttcaaggaaataatttgaatgctggtgatgtttgtggttttatgttaattgacgaaattggacttttatttgaagttaatattttccgcagaacagaagttgcaacctcatcaccaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

259

Amino Acids

28.89

Weight (kDa)

8.74

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	747
AclWI	GGATC	2 cut(s)	293, 329
AcsI	RAATTY	4 cut(s)	120, 421, 540, 655
AcuI	CTGAAG	1 cut(s)	391
AfaI	GTAC	2 cut(s)	324, 579
AfiI	CCNNNNNNNGG	1 cut(s)	632
AgsI	TTSAA	8 cut(s)	109, 132, 269, 426, 601, 664, 678, 733
AjnI	CCWGG	1 cut(s)	774
AjuI	GAANNNNNNNTTGG	2 cut(s)	474, 506
AluBI	AGCT	4 cut(s)	397, 403, 415, 502
AluI	AGCT	4 cut(s)	397, 403, 415, 502
AlwI	GGATC	2 cut(s)	293, 329
ApoI	RAATTY	4 cut(s)	120, 421, 540, 655
Asp700I	GAANNNNTTC	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	697, 764
BciT130I	CCWGG	1 cut(s)	776
BclI	TGATCA	1 cut(s)	213
BfaI	CTAG	2 cut(s)	230, 431
BfmI	CTRYAG	2 cut(s)	383, 398
BglII	AGATCT	1 cut(s)	506
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	776
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	776
BmsI	GCATC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	353, 377
BsaWI	WCCGGW	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	2 cut(s)	353, 377
BseGI	GGATG	2 cut(s)	309, 374
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	272, 366
BsiSI	CCGG	2 cut(s)	226, 633
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	599
BsmI	GAATGC	1 cut(s)	684
Bsp143I	GATC	4 cut(s)	213, 285, 334, 506
BspACI	CCGC	1 cut(s)	747
BspCNI	CTCAG	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	293, 329
BspQI	GCTCTTC	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	2 cut(s)	353, 377
BssMI	GATC	4 cut(s)	213, 285, 334, 506
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	2 cut(s)	247, 410
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	2 cut(s)	503, 559
BstF5I	GGATG	2 cut(s)	309, 374
BstKTI	GATC	4 cut(s)	216, 288, 337, 509
BstMBI	GATC	4 cut(s)	213, 285, 334, 506
BstNI	CCWGG	1 cut(s)	776
BstSCI	CCNGG	1 cut(s)	774
BstSFI	CTRYAG	2 cut(s)	383, 398
BstX2I	RGATCY	3 cut(s)	285, 334, 506
BstYI	RGATCY	3 cut(s)	285, 334, 506
BtsCI	GGATG	2 cut(s)	309, 374
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	464
Cfr10I	RCCGGY	1 cut(s)	225
CsiI	ACCWGGT	1 cut(s)	774
Csp6I	GTAC	2 cut(s)	323, 578
CviAII	CATG	2 cut(s)	459, 513
CviQI	GTAC	2 cut(s)	323, 578
DdeI	CTNAG	2 cut(s)	503, 559
DpnI	GATC	4 cut(s)	215, 287, 336, 508
DpnII	GATC	4 cut(s)	213, 285, 334, 506
Eam1104I	CTCTTC	2 cut(s)	247, 410
EarI	CTCTTC	2 cut(s)	247, 410
Eco57I	CTGAAG	1 cut(s)	391
EcoRI	GAATTC	2 cut(s)	421, 540
EcoRII	CCWGG	1 cut(s)	774
FaeI	CATG	2 cut(s)	462, 516
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	2 cut(s)	458, 512
FbaI	TGATCA	1 cut(s)	213
FokI	GGATG	2 cut(s)	316, 381
FspBI	CTAG	2 cut(s)	230, 431
GsuI	CTGGAG	1 cut(s)	67
HapII	CCGG	2 cut(s)	226, 633
Hin1II	CATG	2 cut(s)	462, 516
HincII	GTYRAC	2 cut(s)	138, 524
HindII	GTYRAC	2 cut(s)	138, 524
HinfI	GANTC	2 cut(s)	94, 128
HpaI	GTTAAC	1 cut(s)	138
HpaII	CCGG	2 cut(s)	226, 633
HphI	GGTGA	2 cut(s)	697, 764
Hpy166II	GTNNAC	2 cut(s)	138, 524
Hpy188I	TCNGA	2 cut(s)	410, 570
Hpy188III	TCNNGA	3 cut(s)	45, 125, 431
Hpy8I	GTNNAC	2 cut(s)	138, 524
HpyAV	CCTTC	3 cut(s)	42, 449, 565
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4V	TGCA	5 cut(s)	195, 372, 462, 639, 763
HpyF3I	CTNAG	2 cut(s)	503, 559
Hsp92II	CATG	2 cut(s)	462, 516
Ksp22I	TGATCA	1 cut(s)	213
KspAI	GTTAAC	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	213, 285, 334, 506
LguI	GCTCTTC	1 cut(s)	410
LmnI	GCTCC	1 cut(s)	259
LweI	GCATC	1 cut(s)	359
MabI	ACCWGGT	1 cut(s)	774
MaeI	CTAG	2 cut(s)	230, 431
MaeIII	GTNAC	4 cut(s)	15, 22, 31, 86
MalI	GATC	4 cut(s)	215, 287, 336, 508
MboI	GATC	4 cut(s)	213, 285, 334, 506
MboII	GAAGA	3 cut(s)	70, 264, 397
MflI	RGATCY	3 cut(s)	285, 334, 506
MluCI	AATT	7 cut(s)	120, 421, 540, 655, 672, 707, 716
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	628
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	3 cut(s)	137, 706, 737
MslI	CAYNNNNRTG	1 cut(s)	517
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	2 cut(s)	226, 633
MspR9I	CCNGG	1 cut(s)	776
Mva1269I	GAATGC	1 cut(s)	684
MvaI	CCWGG	1 cut(s)	776
NdeII	GATC	4 cut(s)	213, 285, 334, 506
NlaIII	CATG	2 cut(s)	462, 516
NlaIV	GGNNCC	1 cut(s)	359
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	4 cut(s)	15, 22, 31, 86
PciSI	GCTCTTC	1 cut(s)	410
PctI	GAATGC	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	1 cut(s)	359
PsuI	RGATCY	3 cut(s)	285, 334, 506
PvuII	CAGCTG	1 cut(s)	502
RsaI	GTAC	2 cut(s)	324, 579
RsaNI	GTAC	2 cut(s)	323, 578
RseI	CAYNNNNRTG	1 cut(s)	517
SapI	GCTCTTC	1 cut(s)	410
SaqAI	TTAA	3 cut(s)	137, 706, 737
Sau3AI	GATC	4 cut(s)	213, 285, 334, 506
ScaI	AGTACT	1 cut(s)	324
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	776
SetI	ASST	9 cut(s)	24, 359, 390, 399, 405, 417, 504, 769, 780
SexAI	ACCWGGT	1 cut(s)	774
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	2 cut(s)	383, 398
SmiMI	CAYNNNNRTG	1 cut(s)	517
Sse9I	AATT	7 cut(s)	120, 421, 540, 655, 672, 707, 716
SsiI	CCGC	1 cut(s)	747
SspI	AATATT	1 cut(s)	741
SspMI	CTAG	2 cut(s)	230, 431
StyD4I	CCNGG	1 cut(s)	774
TaaI	ACNGT	1 cut(s)	597
TaqI	TCGA	1 cut(s)	44
TasI	AATT	7 cut(s)	120, 421, 540, 655, 672, 707, 716
TatI	WGTACW	2 cut(s)	322, 577
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	3 cut(s)	137, 706, 737
Tru9I	TTAA	3 cut(s)	137, 706, 737
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	4 cut(s)	15, 22, 31, 86
Tsp45I	GTSAC	4 cut(s)	15, 22, 31, 86
TspDTI	ATGAA	3 cut(s)	128, 529, 619
TspRI	CASTG	1 cut(s)	245
XapI	RAATTY	4 cut(s)	120, 421, 540, 655
XbaI	TCTAGA	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	2 cut(s)	230, 431
ZrmI	AGTACT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.