Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011039.1

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Reverse (-)

17833 .. 20959

Gene Structure 3127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011039.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ctgcatgttcccggtgggaggacaacgtggcatgttggattgaaatatgatgttggacgtaaaggagccaaattccagtccggttggaccaagtttgtgagagacaataatttgaaaaagggagatgagtgtgtgtttgtgttgactgatgaaaataaattttcatttgaagttgtcataatagctgcaaaatccaccttgccaccagacattgatgatgctaatgacaacatcaaagatgatgaggatggtaagaatgaggatgatactagtgatgatgaaggtgatgattatgatgatgacaacgaccacagtgatgaagatgaagataatgaatattcatcagcacaacagcttcacaagagaaagagatcaagttcaagtaccaaaagtagcatcaaagatgtcggtgcttggactagttctggacaattcctaaaacgacgacctggtgttccaaggagtatacatccaataagggccacaaaaaatgatatagctcttcaggaagctgaagacttcaagtatgttgaaccacattttgtggttccaatgactcccacaaatgtccgcaaatcttttcttaagttgccatctgtttttgtcgagaaaaatcttgataagaggcctagtcatgtcagcctgtggggttcaaatgacatatattggcctgtcgagttacatttcagcaaaggagctagcttccaggccggtgatgattatgatgatgacaacgcccacaatgatgaagaggaagatgaagatgaagatattgaatattcatcagcacaacagcttcacaagagaaagagattaagttcaagtaccaaaagtagcatcaaagatgttggtgcttcgactagtattggacaattcttaaaaggaagacctggtgttccaaggaatttacattcaataagggacacggtaaatgatatagctcttcagagagctacggccttcaagtacgtaaaacctcattctgatgttccaaggggcatgaacccaatgatggccaggggggaaaatacagctcttaggagagctgaggttttctgctctgtacaaccttatttcttgcaagcaatgcatcacagggatgtccatgcaccttttctggtatttttccctagtcttgacgactctgctcagcaatccatattttgcttggatgtttctacagctgtcaatgtggaaagacttgagcaaactcactcacttttacagattaatatcatagatatcccttcagaggtgttcacttgttcacggctcttactgtcttttacgctctcccttttccgttttcaggagttgccatttgattttgccgagaatcatcttgataagcggcctagtcatgtcaagctacaaggttcaaatggggaatcttggtctgtcaagttatattttgcaaatgaattagctggcttccaagatggttggattgagtttgtgcacggccagaattttaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

492

Amino Acids

55.81

Weight (kDa)

5.36

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	466
AciI	CCGC	2 cut(s)	571, 1351
AcoI	YGGCCR	2 cut(s)	1014, 1462
AcsI	RAATTY	4 cut(s)	71, 158, 904, 1468
AcuI	CTGAAG	4 cut(s)	488, 534, 929, 1233
AfaI	GTAC	4 cut(s)	385, 826, 968, 1065
AfiI	CCNNNNNNNGG	4 cut(s)	18, 1012, 1252, 1309
AflII	CTTAAG	1 cut(s)	584
AhlI	ACTAGT	3 cut(s)	269, 419, 860
AjnI	CCWGG	4 cut(s)	448, 705, 889, 1016
Alw21I	GWGCWC	1 cut(s)	1461
Alw26I	GTCTC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	1457
AoxI	GGCC	8 cut(s)	480, 626, 668, 708, 957, 1014, 1352, 1462
ApaLI	GTGCAC	1 cut(s)	1457
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	4 cut(s)	71, 158, 904, 1468
AseI	ATTAAT	1 cut(s)	1230
AspS9I	GGNCC	2 cut(s)	87, 480
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	2 cut(s)	296, 725
AsuNHI	GCTAGC	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	1461
BalI	TGGCCA	1 cut(s)	1016
BbsI	GAAGAC	2 cut(s)	522, 892
Bbv12I	GWGCWC	1 cut(s)	1461
BbvCI	CCTCAGC	1 cut(s)	1047
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	4 cut(s)	242, 601, 1006, 1433
BceAI	ACGGC	3 cut(s)	972, 1286, 1477
BciT130I	CCWGG	4 cut(s)	450, 707, 891, 1018
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	96
BcuI	ACTAGT	3 cut(s)	269, 419, 860
BfaI	CTAG	7 cut(s)	270, 420, 630, 699, 861, 1131, 1356
BfmI	CTRYAG	1 cut(s)	1179
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	2 cut(s)	186, 1352
BlpI	GCTNAGC	1 cut(s)	1149
BlsI	GCNGC	2 cut(s)	187, 1353
Bme1390I	CCNGG	5 cut(s)	12, 450, 707, 891, 1018
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	2 cut(s)	87, 480
BmiI	GGNNCC	2 cut(s)	67, 549
BmrFI	CCNGG	5 cut(s)	12, 450, 707, 891, 1018
BmsI	GCATC	4 cut(s)	208, 405, 846, 1099
BmtI	GCTAGC	1 cut(s)	702
BpiI	GAAGAC	2 cut(s)	522, 892
Bpu10I	CCTNAGC	1 cut(s)	1047
Bpu1102I	GCTNAGC	1 cut(s)	1149
BpuEI	CTTGAG	1 cut(s)	1223
BpuMI	CCSGG	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	970
BsaBI	GATNNNNATC	1 cut(s)	1232
BsaJI	CCNNGG	4 cut(s)	458, 899, 992, 1017
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 1012, 1252, 1309
Bse118I	RCCGGY	1 cut(s)	710
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	1092
Bse8I	GATNNNNATC	1 cut(s)	1232
BseBI	CCWGG	4 cut(s)	450, 707, 891, 1018
BseDI	CCNNGG	4 cut(s)	458, 899, 992, 1017
BseGI	GGATG	5 cut(s)	253, 268, 469, 1105, 1177
BseJI	GATNNNNATC	1 cut(s)	1232
BseLI	CCNNNNNNNGG	4 cut(s)	18, 1012, 1252, 1309
BseMI	GCAATG	1 cut(s)	1092
BseMII	CTCAG	2 cut(s)	1038, 1163
BseNI	ACTGG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	1461
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	8 cut(s)	482, 628, 670, 710, 959, 1016, 1354, 1464
BsiHKAI	GWGCWC	1 cut(s)	1461
BsiSI	CCGG	3 cut(s)	12, 81, 711
BslFI	GGGAC	1 cut(s)	935
BslI	CCNNNNNNNGG	4 cut(s)	18, 1012, 1252, 1309
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	935
BsnI	GGCC	8 cut(s)	482, 628, 670, 710, 959, 1016, 1354, 1464
Bsp1286I	GDGCHC	1 cut(s)	1461
Bsp1407I	TGTACA	1 cut(s)	1063
Bsp143I	GATC	1 cut(s)	371
Bsp1720I	GCTNAGC	1 cut(s)	1149
BspACI	CCGC	2 cut(s)	571, 1351
BspANI	GGCC	8 cut(s)	482, 628, 670, 710, 959, 1016, 1354, 1464
BspCNI	CTCAG	2 cut(s)	1039, 1162
BspLI	GGNNCC	2 cut(s)	67, 549
BspOI	GCTAGC	1 cut(s)	702
BspQI	GCTCTTC	2 cut(s)	507, 948
BspTI	CTTAAG	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	1092
BsrFI	RCCGGY	1 cut(s)	710
BsrGI	TGTACA	1 cut(s)	1063
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	710
BssECI	CCNNGG	4 cut(s)	458, 899, 992, 1017
BssMI	GATC	1 cut(s)	371
BssNAI	GTATAC	1 cut(s)	467
BssT1I	CCWWGG	3 cut(s)	458, 899, 992
Bst1107I	GTATAC	1 cut(s)	467
Bst2UI	CCWGG	4 cut(s)	450, 707, 891, 1018
Bst4CI	ACNGT	3 cut(s)	314, 928, 1281
Bst6I	CTCTTC	3 cut(s)	507, 744, 948
BstAFI	CTTAAG	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	1087
BstAUI	TGTACA	1 cut(s)	1063
BstBAI	YACGTR	1 cut(s)	970
BstC8I	GCNNGC	3 cut(s)	700, 1083, 1429
BstDEI	CTNAG	3 cut(s)	1037, 1047, 1149
BstF5I	GGATG	5 cut(s)	253, 268, 469, 1105, 1177
BstKTI	GATC	1 cut(s)	374
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	1 cut(s)	1087
BstNI	CCWGG	4 cut(s)	450, 707, 891, 1018
BstNSI	RCATGY	2 cut(s)	8, 35
BstSCI	CCNGG	5 cut(s)	10, 448, 705, 889, 1016
BstSFI	CTRYAG	1 cut(s)	1179
BstSLI	GKGCMC	1 cut(s)	1461
BstSNI	TACGTA	1 cut(s)	970
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	2 cut(s)	522, 892
BstZ17I	GTATAC	1 cut(s)	467
BsuRI	GGCC	8 cut(s)	482, 628, 670, 710, 959, 1016, 1354, 1464
BtsCI	GGATG	5 cut(s)	253, 268, 469, 1105, 1177
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	700, 1083, 1429
Cfr10I	RCCGGY	1 cut(s)	710
Cfr13I	GGNCC	2 cut(s)	87, 480
CsiI	ACCWGGT	2 cut(s)	448, 889
Csp6I	GTAC	4 cut(s)	384, 825, 967, 1064
CviAII	CATG	6 cut(s)	5, 32, 635, 1000, 1106, 1361
CviQI	GTAC	4 cut(s)	384, 825, 967, 1064
DdeI	CTNAG	3 cut(s)	1037, 1047, 1149
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
EaeI	YGGCCR	2 cut(s)	1014, 1462
Eam1104I	CTCTTC	3 cut(s)	507, 744, 948
EarI	CTCTTC	3 cut(s)	507, 744, 948
Eco105I	TACGTA	1 cut(s)	970
Eco130I	CCWWGG	3 cut(s)	458, 899, 992
Eco147I	AGGCCT	1 cut(s)	628
Eco32I	GATATC	1 cut(s)	1243
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	4 cut(s)	488, 534, 929, 1233
EcoRII	CCWGG	4 cut(s)	448, 705, 889, 1016
EcoRV	GATATC	1 cut(s)	1243
EcoT14I	CCWWGG	3 cut(s)	458, 899, 992
EcoT22I	ATGCAT	1 cut(s)	1092
ErhI	CCWWGG	3 cut(s)	458, 899, 992
FaeI	CATG	6 cut(s)	8, 35, 638, 1003, 1109, 1364
FaqI	GGGAC	1 cut(s)	935
FatI	CATG	6 cut(s)	4, 31, 634, 999, 1105, 1360
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	186, 1352
FokI	GGATG	5 cut(s)	260, 275, 456, 1112, 1184
Fsp4HI	GCNGC	2 cut(s)	186, 1352
FspBI	CTAG	7 cut(s)	270, 420, 630, 699, 861, 1131, 1356
GluI	GCNGC	2 cut(s)	186, 1352
HaeIII	GGCC	8 cut(s)	482, 628, 670, 710, 959, 1016, 1354, 1464
HapII	CCGG	3 cut(s)	12, 81, 711
Hin1II	CATG	6 cut(s)	8, 35, 638, 1003, 1109, 1364
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	4 cut(s)	556, 1142, 1336, 1388
HpaII	CCGG	3 cut(s)	12, 81, 711
HphI	GGTGA	2 cut(s)	296, 725
Hpy166II	GTNNAC	5 cut(s)	144, 467, 1260, 1268, 1459
Hpy188I	TCNGA	3 cut(s)	948, 985, 1252
Hpy188III	TCNNGA	7 cut(s)	426, 506, 607, 617, 1136, 1310, 1343
Hpy8I	GTNNAC	5 cut(s)	144, 467, 1260, 1268, 1459
Hpy99I	CGWCG	1 cut(s)	447
HpyAV	CCTTC	3 cut(s)	275, 970, 1257
HpyCH4III	ACNGT	3 cut(s)	314, 928, 1281
HpyCH4IV	ACGT	3 cut(s)	26, 58, 969
HpyCH4V	TGCA	7 cut(s)	4, 188, 1081, 1090, 1109, 1415, 1459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1087
HpyF3I	CTNAG	3 cut(s)	1037, 1047, 1149
HpySE526I	ACGT	3 cut(s)	26, 58, 969
Hsp92II	CATG	6 cut(s)	8, 35, 638, 1003, 1109, 1364
Kzo9I	GATC	1 cut(s)	371
LguI	GCTCTTC	2 cut(s)	507, 948
LmnI	GCTCC	2 cut(s)	65, 695
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	4 cut(s)	208, 405, 846, 1099
MabI	ACCWGGT	2 cut(s)	448, 889
MaeI	CTAG	7 cut(s)	270, 420, 630, 699, 861, 1131, 1356
MaeII	ACGT	3 cut(s)	26, 58, 969
MaeIII	GTNAC	1 cut(s)	678
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	1461
MlsI	TGGCCA	1 cut(s)	1016
MluCI	AATT	8 cut(s)	71, 109, 158, 431, 872, 904, 1421, 1468
MluNI	TGGCCA	1 cut(s)	1016
MlyI	GAGTC	2 cut(s)	550, 1136
MmeI	TCCRAC	4 cut(s)	16, 34, 65, 1424
MnlI	CCTC	8 cut(s)	12, 238, 253, 618, 745, 987, 1042, 1246
Mox20I	TGGCCA	1 cut(s)	1016
Mph1103I	ATGCAT	1 cut(s)	1092
MscI	TGGCCA	1 cut(s)	1016
MseI	TTAA	5 cut(s)	585, 815, 878, 1230, 1473
MslI	CAYNNNNRTG	4 cut(s)	315, 744, 984, 1098
Msp20I	TGGCCA	1 cut(s)	1016
MspA1I	CMGCKG	1 cut(s)	1184
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	3 cut(s)	12, 81, 711
MspR9I	CCNGG	5 cut(s)	12, 450, 707, 891, 1018
MvaI	CCWGG	4 cut(s)	450, 707, 891, 1018
MwoI	GCNNNNNNNGC	1 cut(s)	1087
NciI	CCSGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	371
NheI	GCTAGC	1 cut(s)	698
NlaIII	CATG	6 cut(s)	8, 35, 638, 1003, 1109, 1364
NlaIV	GGNNCC	2 cut(s)	67, 549
NmeAIII	GCCGAG	1 cut(s)	1357
NsiI	ATGCAT	1 cut(s)	1092
NspI	RCATGY	2 cut(s)	8, 35
PceI	AGGCCT	1 cut(s)	628
PciSI	GCTCTTC	2 cut(s)	507, 948
PfeI	GAWTC	2 cut(s)	1336, 1388
PkrI	GCNGC	2 cut(s)	187, 1353
PleI	GAGTC	2 cut(s)	550, 1136
PpsI	GAGTC	2 cut(s)	550, 1136
Ppu21I	YACGTR	1 cut(s)	970
PshBI	ATTAAT	1 cut(s)	1230
Psp6I	CCWGG	4 cut(s)	448, 705, 889, 1016
PspGI	CCWGG	4 cut(s)	448, 705, 889, 1016
PspN4I	GGNNCC	2 cut(s)	67, 549
PspPI	GGNCC	2 cut(s)	87, 480
PvuII	CAGCTG	1 cut(s)	1184
RsaI	GTAC	4 cut(s)	385, 826, 968, 1065
RsaNI	GTAC	4 cut(s)	384, 825, 967, 1064
RseI	CAYNNNNRTG	4 cut(s)	315, 744, 984, 1098
SapI	GCTCTTC	2 cut(s)	507, 948
SaqAI	TTAA	5 cut(s)	585, 815, 878, 1230, 1473
SatI	GCNGC	2 cut(s)	186, 1352
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	2 cut(s)	87, 480
SchI	GAGTC	2 cut(s)	550, 1136
ScrFI	CCNGG	5 cut(s)	12, 450, 707, 891, 1018
SduI	GDGCHC	1 cut(s)	1461
SexAI	ACCWGGT	2 cut(s)	448, 889
SfaNI	GCATC	4 cut(s)	208, 405, 846, 1099
SfcI	CTRYAG	1 cut(s)	1179
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	4 cut(s)	315, 744, 984, 1098
SmlI	CTYRAG	2 cut(s)	584, 1202
SmoI	CTYRAG	2 cut(s)	584, 1202
SnaBI	TACGTA	1 cut(s)	970
SpeI	ACTAGT	3 cut(s)	269, 419, 860
Sse9I	AATT	8 cut(s)	71, 109, 158, 431, 872, 904, 1421, 1468
SseBI	AGGCCT	1 cut(s)	628
SsiI	CCGC	2 cut(s)	571, 1351
SspI	AATATT	2 cut(s)	338, 779
SspMI	CTAG	7 cut(s)	270, 420, 630, 699, 861, 1131, 1356
StuI	AGGCCT	1 cut(s)	628
StyD4I	CCNGG	5 cut(s)	10, 448, 705, 889, 1016
StyI	CCWWGG	3 cut(s)	458, 899, 992
TaaI	ACNGT	3 cut(s)	314, 928, 1281
TaiI	ACGT	3 cut(s)	29, 61, 972
TaqI	TCGA	3 cut(s)	606, 675, 857
TasI	AATT	8 cut(s)	71, 109, 158, 431, 872, 904, 1421, 1468
TatI	WGTACW	1 cut(s)	1063
TauI	GCSGC	1 cut(s)	1354
TfiI	GAWTC	2 cut(s)	1336, 1388
Tru1I	TTAA	5 cut(s)	585, 815, 878, 1230, 1473
Tru9I	TTAA	5 cut(s)	585, 815, 878, 1230, 1473
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	1292
TspRI	CASTG	1 cut(s)	319
Vha464I	CTTAAG	1 cut(s)	584
VneI	GTGCAC	1 cut(s)	1457
VpaK11BI	GGWCC	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	1230
XapI	RAATTY	4 cut(s)	71, 158, 904, 1468
XceI	RCATGY	2 cut(s)	8, 35
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1165
XmiI	GTMKAC	1 cut(s)	466
XspI	CTAG	7 cut(s)	270, 420, 630, 699, 861, 1131, 1356
Zsp2I	ATGCAT	1 cut(s)	1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.