Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Reverse (-)

14448727 .. 14451568

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGTTCTCCTTGCTGGAAAATTGATCAACGACCAAAATTTTCTGCTACGCCTCTCAGCTTTCATAAATCCATTTCGGAGAACACTCACAGAGACAAGAATCTTAGAATTCCAAGGAGTTATGTGAAGAAATATGAGAAGAAATATGGAGAAGAGCTATCACATATCGTATATCTTAAGCTTCCATGTGGTACAGAATGGGAAATAGAAGTCACAAGACATAATGGCGTCTTTTGGTTCGACAAGGGTTGGGAAACCTTTTGCAAGTTTTACTCTATCGAGTCTCGCTACTCGCTAGTTTTTCAATATGAAGGGAATTCTAGATTCAAAGTTAACATATTTGATAGAACAAACTCAGAGATTGAGTATCCTATCAAAACCCCGAAGAAGGAAGAAAATGATGTAGATGATCAATTTACTCCATCTAGTCCTCTGCTACCTCAAAAGAACAATATAGCAAGTTCAAATGGGAACAAGAAAAAAGATAATGCTCTTCAGAGAGCTAATGCTTTCAAATCTGTAAAACCTTCTTTCGTGGTTGCAATGCATCCCACTTATGTCTGTGGACGTGTTTTGAATTTGCCATGTGGTTTTGCCAGGAAACATCTTACTGACCGGCCTAATCACGTGAGCCTGCGGGGTTCAAATGGGAAAATTTGGTCTGTCCATTTCCATTTCAGCAACCAAGCTAGCTTCCGTGGTGGTTGGACTGAATTTGAGCGAGGCAATAATTTGGAAGAAGGTGATGCTTGTGCCTTTGAGTTGATTAAGAAGAGCAAGTTTTTATTTGACGTTCACTTTTTCCGCACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

272

Amino Acids

31.6

Weight (kDa)

9.38

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	26 - 116	1.2e-14	B3 DNA binding domain
B3	PF02362	187 - 270	8.2e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	637, 805
AcsI	RAATTY	6 cut(s)	38, 108, 316, 577, 654, 713
AcuI	CTGAAG	1 cut(s)	479
AcvI	CACGTG	1 cut(s)	628
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	388
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	6 cut(s)	305, 328, 465, 514, 577, 645
AjiI	CACGTC	1 cut(s)	569
AjnI	CCWGG	1 cut(s)	596
AluBI	AGCT	6 cut(s)	60, 157, 181, 503, 689, 693
AluI	AGCT	6 cut(s)	60, 157, 181, 503, 689, 693
Alw26I	GTCTC	2 cut(s)	87, 288
AoxI	GGCC	1 cut(s)	617
ApoI	RAATTY	6 cut(s)	38, 108, 316, 577, 654, 713
AsuHPI	GGTGA	1 cut(s)	755
AsuNHI	GCTAGC	1 cut(s)	689
BbrPI	CACGTG	1 cut(s)	628
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	598
BciVI	GTATCC	1 cut(s)	378
BclI	TGATCA	2 cut(s)	25, 409
BcoDI	GTCTC	2 cut(s)	87, 288
BfaI	CTAG	4 cut(s)	296, 321, 426, 690
BfrI	CTTAAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	598
BmgBI	CACGTC	1 cut(s)	569
BmrFI	CCNGG	1 cut(s)	598
BmsI	GCATC	2 cut(s)	556, 736
BmtI	GCTAGC	1 cut(s)	693
BsaAI	YACGTR	1 cut(s)	628
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	113, 697
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse118I	RCCGGY	1 cut(s)	615
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	2 cut(s)	113, 697
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	70, 369
BshFI	GGCC	1 cut(s)	619
BsiSI	CCGG	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	2 cut(s)	87, 288
BsnI	GGCC	1 cut(s)	619
Bsp143I	GATC	2 cut(s)	25, 409
BspACI	CCGC	2 cut(s)	637, 805
BspANI	GGCC	1 cut(s)	619
BspCNI	CTCAG	2 cut(s)	69, 368
BspOI	GCTAGC	1 cut(s)	693
BspQI	GCTCTTC	3 cut(s)	147, 498, 767
BspTI	CTTAAG	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	615
BssAI	RCCGGY	1 cut(s)	615
BssECI	CCNNGG	2 cut(s)	113, 697
BssMI	GATC	2 cut(s)	25, 409
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	598
Bst6I	CTCTTC	3 cut(s)	147, 498, 767
BstACI	GRCGYC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	635, 691
BstDEI	CTNAG	3 cut(s)	56, 104, 355
BstDSI	CCRYGG	1 cut(s)	697
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	2 cut(s)	28, 412
BstMAI	GTCTC	2 cut(s)	87, 288
BstMBI	GATC	2 cut(s)	25, 409
BstNI	CCWGG	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	596
BsuI	GTATCC	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	619
BtgI	CCRYGG	1 cut(s)	697
BtrI	CACGTC	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	635, 691
Cfr10I	RCCGGY	1 cut(s)	615
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	2 cut(s)	186, 585
CviJI	RGCY	8 cut(s)	60, 157, 181, 503, 619, 633, 689, 693
CviKI_1	RGCY	8 cut(s)	60, 157, 181, 503, 619, 633, 689, 693
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	3 cut(s)	56, 104, 355
DpnI	GATC	2 cut(s)	27, 411
DpnII	GATC	2 cut(s)	25, 409
Eam1104I	CTCTTC	3 cut(s)	147, 498, 767
EarI	CTCTTC	3 cut(s)	147, 498, 767
Eco130I	CCWWGG	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	479
Eco72I	CACGTG	1 cut(s)	628
EcoRI	GAATTC	2 cut(s)	108, 316
EcoRII	CCWGG	1 cut(s)	596
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	189, 588
FatI	CATG	2 cut(s)	185, 584
FauI	CCCGC	1 cut(s)	630
FbaI	TGATCA	2 cut(s)	25, 409
FokI	GGATG	1 cut(s)	534
FspBI	CTAG	4 cut(s)	296, 321, 426, 690
HaeIII	GGCC	1 cut(s)	619
HapII	CCGG	1 cut(s)	616
HgaI	GACGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	189, 588
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	100, 281, 324
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	3 cut(s)	334, 566, 796
Hpy188I	TCNGA	3 cut(s)	79, 358, 498
Hpy188III	TCNNGA	1 cut(s)	321
Hpy8I	GTNNAC	3 cut(s)	334, 566, 796
HpyAV	CCTTC	4 cut(s)	305, 382, 537, 734
HpyCH4IV	ACGT	3 cut(s)	568, 627, 792
HpyCH4V	TGCA	3 cut(s)	264, 542, 547
HpyF3I	CTNAG	3 cut(s)	56, 104, 355
HpySE526I	ACGT	3 cut(s)	568, 627, 792
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	189, 588
Ksp22I	TGATCA	2 cut(s)	25, 409
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	25, 409
LguI	GCTCTTC	3 cut(s)	147, 498, 767
LpnPI	CCDG	4 cut(s)	583, 610, 629, 647
LweI	GCATC	2 cut(s)	556, 736
MaeI	CTAG	4 cut(s)	296, 321, 426, 690
MaeII	ACGT	3 cut(s)	568, 627, 792
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	27, 411
MboI	GATC	2 cut(s)	25, 409
MboII	GAAGA	8 cut(s)	139, 151, 164, 397, 404, 485, 749, 784
MluCI	AATT	9 cut(s)	21, 38, 108, 316, 413, 577, 654, 713, 730
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	686
MnlI	CCTC	4 cut(s)	63, 441, 450, 716
Mph1103I	ATGCAT	1 cut(s)	549
MseI	TTAA	3 cut(s)	177, 333, 768
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	598
NdeII	GATC	2 cut(s)	25, 409
NheI	GCTAGC	1 cut(s)	689
NlaIII	CATG	2 cut(s)	189, 588
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	549
PciSI	GCTCTTC	3 cut(s)	147, 498, 767
PfeI	GAWTC	2 cut(s)	100, 324
PleI	GAGTC	1 cut(s)	289
PmaCI	CACGTG	1 cut(s)	628
PmlI	CACGTG	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	596
PspCI	CACGTG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	596
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SapI	GCTCTTC	3 cut(s)	147, 498, 767
SaqAI	TTAA	3 cut(s)	177, 333, 768
Sau3AI	GATC	2 cut(s)	25, 409
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	598
SfaNI	GCATC	2 cut(s)	556, 736
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	9 cut(s)	21, 38, 108, 316, 413, 577, 654, 713, 730
SsiI	CCGC	2 cut(s)	637, 805
SspMI	CTAG	4 cut(s)	296, 321, 426, 690
StyD4I	CCNGG	1 cut(s)	596
StyI	CCWWGG	1 cut(s)	113
TaiI	ACGT	3 cut(s)	571, 630, 795
TaqI	TCGA	2 cut(s)	240, 279
TasI	AATT	9 cut(s)	21, 38, 108, 316, 413, 577, 654, 713, 730
TfiI	GAWTC	2 cut(s)	100, 324
Tru1I	TTAA	3 cut(s)	177, 333, 768
Tru9I	TTAA	3 cut(s)	177, 333, 768
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	53, 324
TspGWI	ACGGA	1 cut(s)	686
Vha464I	CTTAAG	1 cut(s)	176
XapI	RAATTY	6 cut(s)	38, 108, 316, 577, 654, 713
XbaI	TCTAGA	1 cut(s)	320
XspI	CTAG	4 cut(s)	296, 321, 426, 690
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.