Rh2BG170700

B3 domain-containing

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
15066588 .. 15069639
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG170700.1

Sequence Viewer

Length: 1881 bp
ATGAGTTCTCCTTGCTGGAAAATTGATCAGCGACCAAAATTTTCTGCTACGCCTCTCAGCTTTCATAAGTCCATTTCAGAGAAAACTCACAGAGACAATAATCTTAGAGTTCCAAGGAGTTATGTGAAGAAATATGAGAAGAAATATGGAGAAGAGCTATCAAATATCGTACATCTTAAGCTTCCATGTGGTACAGAATGGGAAATAGAAGTCACAAGACATAATGGTGTCTTTTGGTTCGACAAGGGTTGGGAAACCTTTTGCAAGTTTTACTCCATCGAGTCTCGCTACTCGCTAGTTTTTCAATATGAAGGGAATTCTAGATTCAAAGTTAACATATTTGATAGAACAAACTCAGAGATTGAGTATCCTATCAAAACCCCGAAGAAGGAAGAAAATGATGTAGATGATCAATTTCCACCGGCTAGTCCTCTGCTGCCTCAAAAGAACAATATAGCAAGTTCAAATGGTGACAAAAAGGATCTTCCTGCGGAAGTAGATGAGGGAGACAAGTCTAGTAGTACTCAAAGATCACAAAAACCAACAACTAAGGTTCTTGGGAGGATGCACCCTTCGACTACAAGAGGAAGTGGAGCTGTACAGACAGTTAAAGAATTCAAGTACACTGAGCAGCCTTCTTGTTTTTTGATTCCTATGTGCCCCTCTTATATCGAAAAACATATGCTTTGGCTGCCAAGTGACTTTGCCATGCATTTGAAACATCTTATTACGAATTCTGGTAATCTTACCCTTCGTGTTTCGGAAGGGAGCACAACAAGAACTTGGACTGTTGGAATGAAATATGAAAAAGAAAGAGCCAAATTCCAGTCTGGATGGAGTGAATTTGTGCAAGGCAATAAACTGAATCATGGTGATGTGTGTAACCTCATGTTAATTGACAAAAATGAACTTTTATTTGAAGTTAAGATTTTCCGAGCAAGAGAAACTGTGGATTGCACCTTCTCACCGGATATTGATGAAGCTGATGCACATCACGAGCATGATGATGACAATGGTGATAATGATGCTGCTCATGACAATCGTTCATTCACAATTATCATACGACAGTCTTATACTACTCGTTTGCCAGTGCCTGCTAAGTTCCACAAACATGTTACTAAGAAGCCTGATACCGCTAACCTGAGTCTTCCCGGTGGGAGGAGAACTTGGCCTATTTCATTGAAATATGAGGTTTCAACAGAAAGAGTCAGATTCCAGTCTGGTTGGAGCAAGTTTGTACGAGACAATCATTTGAAAGTTGGAGATGCGTGTGAGTTTGTGTTGACTGATGAAACTAGACTTTCATTTGAAGTTCATATAGAAGCTGCTAAATGCACCTTGCCAGATGATGATGAAGCTGAAGATGAGGGTGATGACAGTGATAGTGATTGTGATGATGAATATCCATTAGCACCACGACTTCACAAAAGAAAGAGATCAAGTTCAAGTACCAAAAGCAACATCGAAGATGTAGATGGTTCCACTAGTAATAAACAATTCTTGAAACGAATTCGAAGGAGCATGAGTCCAATAGGGAACAAGAAAAAAGATAATGCTCTTCAGAGAGCTAATGCTTTCAAATCTGTAAAACCTTCTTTCGTGGTTGCAATGCATCCCACTTATGTCTGTGGAGGTGTTTTGAATTTGCCATGTGGTTTTGCCAAGAAACATCTTACTGAGAGGCCTAATCAGGTGAGCCTGCGGGGTTCAAATGGGAAAATTTGGTCTGTCAATTTCCATTTCAGCAACCAAGCTAGCTTCCGCAGTGGTTGGACTGACTTTGTGCGAGGCAATAATTTGGAAGAAGGTGATGCGTGTGCCTTTGAGTTGATTAAGAAGAGCAAGTTTTTATTTGACGTTCACTTTTTCCGCACCACATAG

Protein Analysis

626

Amino Acids

71.68

Weight (kDa)

8.38

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 26 - 116 1.7e-13 B3 DNA binding domain
B3 PF02362 216 - 313 5.8e-15 B3 DNA binding domain
B3 PF02362 359 - 440 3.6e-13 B3 DNA binding domain
B3 PF02362 544 - 625 1.9e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 491, 1134, 1702, 1762, 1870
AclWI GGATC 1 cut(s) 489
AcsI RAATTY 9 cut(s) 38, 316, 614, 733, 821, 842, 1509, 1642, 1719
AcuI CTGAAG 2 cut(s) 1380, 1544
AfaI GTAC 7 cut(s) 171, 193, 523, 600, 623, 1239, 1450
AfiI CCNNNNNNNGG 2 cut(s) 388, 1158
AflII CTTAAG 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 1111
AhlI ACTAGT 1 cut(s) 1484
Alw21I GWGCWC 1 cut(s) 773
Alw26I GTCTC 4 cut(s) 87, 288, 501, 1236
AlwI GGATC 1 cut(s) 489
AlwNI CAGNNNCTG 1 cut(s) 1094
AoxI GGCC 2 cut(s) 1169, 1682
ApeKI GCWGC 5 cut(s) 436, 631, 691, 1028, 1325
ApoI RAATTY 9 cut(s) 38, 316, 614, 733, 821, 842, 1509, 1642, 1719
AsuC2I CCSGG 1 cut(s) 1152
AsuHPI GGTGA 7 cut(s) 482, 884, 957, 1028, 1382, 1705, 1820
AsuII TTCGAA 1 cut(s) 1513
AsuNHI GCTAGC 1 cut(s) 1754
BaeGI GKGCMC 1 cut(s) 662
BauI CACGAG 1 cut(s) 995
BbsI GAAGAC 1 cut(s) 1139
Bbv12I GWGCWC 1 cut(s) 773
BbvI GCAGC 5 cut(s) 423, 643, 678, 1015, 1312
BccI CCATC 3 cut(s) 284, 828, 1469
BciVI GTATCC 1 cut(s) 378
BclI TGATCA 2 cut(s) 25, 409
BcnI CCSGG 1 cut(s) 1152
BcoDI GTCTC 4 cut(s) 87, 288, 501, 1236
BcuI ACTAGT 1 cut(s) 1484
BfaI CTAG 7 cut(s) 296, 321, 426, 516, 1296, 1485, 1755
BfrI CTTAAG 1 cut(s) 176
BfuI GTATCC 1 cut(s) 378
BisI GCNGC 5 cut(s) 437, 632, 692, 1029, 1326
BlsI GCNGC 5 cut(s) 438, 633, 693, 1030, 1327
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 1152
BmiI GGNNCC 1 cut(s) 1480
BmrFI CCNGG 1 cut(s) 1152
BmsI GCATC 6 cut(s) 555, 976, 1015, 1255, 1621, 1801
BmtI GCTAGC 1 cut(s) 1758
BpiI GAAGAC 1 cut(s) 1139
Bpu14I TTCGAA 1 cut(s) 1513
BpuMI CCSGG 1 cut(s) 1152
BsaBI GATNNNNATC 2 cut(s) 990, 1401
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 967
BsaXI ACNNNNNCTCC 2 cut(s) 1510, 1540
Bsc4I CCNNNNNNNGG 2 cut(s) 388, 1158
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 3 cut(s) 826, 1088, 1216
Bse3DI GCAATG 1 cut(s) 1614
Bse8I GATNNNNATC 2 cut(s) 990, 1401
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 3 cut(s) 570, 839, 1612
BseJI GATNNNNATC 2 cut(s) 990, 1401
BseLI CCNNNNNNNGG 2 cut(s) 388, 1158
BseMI GCAATG 1 cut(s) 1614
BseMII CTCAG 5 cut(s) 70, 369, 618, 1133, 1668
BseNI ACTGG 3 cut(s) 826, 1088, 1216
BseRI GAGGAG 1 cut(s) 1174
BseSI GKGCMC 1 cut(s) 662
BseXI GCAGC 5 cut(s) 423, 643, 678, 1015, 1312
BshFI GGCC 2 cut(s) 1171, 1684
BsiHKAI GWGCWC 1 cut(s) 773
BsiSI CCGG 3 cut(s) 422, 968, 1152
BslI CCNNNNNNNGG 2 cut(s) 388, 1158
BsmAI GTCTC 4 cut(s) 87, 288, 501, 1236
BsnI GGCC 2 cut(s) 1171, 1684
Bsp119I TTCGAA 1 cut(s) 1513
Bsp1286I GDGCHC 2 cut(s) 662, 773
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 5 cut(s) 25, 409, 481, 530, 1436
BspACI CCGC 5 cut(s) 491, 1134, 1702, 1762, 1870
BspANI GGCC 2 cut(s) 1171, 1684
BspCNI CTCAG 5 cut(s) 69, 368, 619, 1134, 1669
BspHI TCATGA 1 cut(s) 1033
BspLI GGNNCC 1 cut(s) 1480
BspOI GCTAGC 1 cut(s) 1758
BspPI GGATC 1 cut(s) 489
BspQI GCTCTTC 3 cut(s) 147, 1563, 1832
BspT104I TTCGAA 1 cut(s) 1513
BspTI CTTAAG 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 1614
BsrFI RCCGGY 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 598
BsrI ACTGG 3 cut(s) 826, 1088, 1216
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 5 cut(s) 25, 409, 481, 530, 1436
BssSI CACGAG 1 cut(s) 995
BssT1I CCWWGG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 995
Bst4CI ACNGT 5 cut(s) 607, 790, 949, 1068, 1379
Bst6I CTCTTC 3 cut(s) 147, 1563, 1832
BstAFI CTTAAG 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 598
BstBI TTCGAA 1 cut(s) 1513
BstC8I GCNNGC 3 cut(s) 1095, 1700, 1756
BstDEI CTNAG 9 cut(s) 56, 104, 355, 549, 627, 1098, 1119, 1142, 1677
BstF5I GGATG 3 cut(s) 570, 839, 1612
BstKTI GATC 5 cut(s) 28, 412, 484, 533, 1439
BstMAI GTCTC 4 cut(s) 87, 288, 501, 1236
BstMBI GATC 5 cut(s) 25, 409, 481, 530, 1436
BstMWI GCNNNNNNNGC 1 cut(s) 691
BstNSI RCATGY 1 cut(s) 1115
BstSCI CCNGG 1 cut(s) 1150
BstSLI GKGCMC 1 cut(s) 662
BstV1I GCAGC 5 cut(s) 423, 643, 678, 1015, 1312
BstV2I GAAGAC 1 cut(s) 1139
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 2 cut(s) 1171, 1684
BtsCI GGATG 3 cut(s) 570, 839, 1612
BtsI GCAGTG 1 cut(s) 1771
BtsIMutI CAGTG 4 cut(s) 624, 1095, 1384, 1771
Cac8I GCNNGC 3 cut(s) 1095, 1700, 1756
CaiI CAGNNNCTG 1 cut(s) 1094
CciI TCATGA 1 cut(s) 1033
Cfr10I RCCGGY 1 cut(s) 421
Csp6I GTAC 7 cut(s) 170, 192, 522, 599, 622, 1238, 1449
CviAII CATG 9 cut(s) 186, 709, 869, 889, 1001, 1034, 1112, 1522, 1650
CviQI GTAC 7 cut(s) 170, 192, 522, 599, 622, 1238, 1449
DdeI CTNAG 9 cut(s) 56, 104, 355, 549, 627, 1098, 1119, 1142, 1677
DpnI GATC 5 cut(s) 27, 411, 483, 532, 1438
DpnII GATC 5 cut(s) 25, 409, 481, 530, 1436
Eam1104I CTCTTC 3 cut(s) 147, 1563, 1832
EarI CTCTTC 3 cut(s) 147, 1563, 1832
Eco130I CCWWGG 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 1684
Eco57I CTGAAG 2 cut(s) 1380, 1544
EcoRI GAATTC 4 cut(s) 316, 614, 733, 1509
EcoT14I CCWWGG 1 cut(s) 113
EcoT22I ATGCAT 2 cut(s) 714, 1614
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 9 cut(s) 189, 712, 872, 892, 1004, 1037, 1115, 1525, 1653
FatI CATG 9 cut(s) 185, 708, 868, 888, 1000, 1033, 1111, 1521, 1649
FauI CCCGC 1 cut(s) 1695
FauNDI CATATG 1 cut(s) 681
FbaI TGATCA 2 cut(s) 25, 409
Fnu4HI GCNGC 5 cut(s) 437, 632, 692, 1029, 1326
FokI GGATG 3 cut(s) 577, 846, 1599
Fsp4HI GCNGC 5 cut(s) 437, 632, 692, 1029, 1326
FspBI CTAG 7 cut(s) 296, 321, 426, 516, 1296, 1485, 1755
GluI GCNGC 5 cut(s) 437, 632, 692, 1029, 1326
HaeIII GGCC 2 cut(s) 1171, 1684
HapII CCGG 3 cut(s) 422, 968, 1152
Hin1II CATG 9 cut(s) 189, 712, 872, 892, 1004, 1037, 1115, 1525, 1653
HincII GTYRAC 2 cut(s) 334, 1284
HindII GTYRAC 2 cut(s) 334, 1284
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 8 cut(s) 281, 324, 649, 865, 1144, 1206, 1212, 1525
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 3 cut(s) 422, 968, 1152
HphI GGTGA 7 cut(s) 482, 884, 957, 1028, 1382, 1705, 1820
Hpy166II GTNNAC 4 cut(s) 334, 624, 1284, 1861
Hpy188I TCNGA 6 cut(s) 79, 358, 763, 935, 1211, 1563
Hpy188III TCNNGA 5 cut(s) 321, 831, 995, 1034, 1501
Hpy8I GTNNAC 4 cut(s) 334, 624, 1284, 1861
HpyCH4III ACNGT 5 cut(s) 607, 790, 949, 1068, 1379
HpyCH4IV ACGT 1 cut(s) 1857
HpyCH4V TGCA 9 cut(s) 264, 568, 712, 850, 957, 989, 1335, 1607, 1612
HpyF10VI GCNNNNNNNGC 1 cut(s) 691
HpyF3I CTNAG 9 cut(s) 56, 104, 355, 549, 627, 1098, 1119, 1142, 1677
HpySE526I ACGT 1 cut(s) 1857
Hsp92II CATG 9 cut(s) 189, 712, 872, 892, 1004, 1037, 1115, 1525, 1653
Ksp22I TGATCA 2 cut(s) 25, 409
KspAI GTTAAC 1 cut(s) 334
Kzo9I GATC 5 cut(s) 25, 409, 481, 530, 1436
LguI GCTCTTC 3 cut(s) 147, 1563, 1832
LmnI GCTCC 4 cut(s) 593, 768, 1227, 1518
Lsp1109I GCAGC 5 cut(s) 423, 643, 678, 1015, 1312
LweI GCATC 6 cut(s) 555, 976, 1015, 1255, 1621, 1801
MaeI CTAG 7 cut(s) 296, 321, 426, 516, 1296, 1485, 1755
MaeII ACGT 1 cut(s) 1857
MaeIII GTNAC 5 cut(s) 211, 470, 698, 881, 1114
MalI GATC 5 cut(s) 27, 411, 483, 532, 1438
MboI GATC 5 cut(s) 25, 409, 481, 530, 1436
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 2 cut(s) 662, 773
MlyI GAGTC 4 cut(s) 290, 1153, 1215, 1534
MmeI TCCRAC 4 cut(s) 772, 1205, 1240, 1751
Mph1103I ATGCAT 2 cut(s) 714, 1614
MseI TTAA 6 cut(s) 177, 333, 609, 893, 924, 1833
MslI CAYNNNNRTG 5 cut(s) 225, 873, 999, 1005, 1110
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 3 cut(s) 422, 968, 1152
MspR9I CCNGG 1 cut(s) 1152
MwoI GCNNNNNNNGC 1 cut(s) 691
NciI CCSGG 1 cut(s) 1152
NdeI CATATG 1 cut(s) 681
NdeII GATC 5 cut(s) 25, 409, 481, 530, 1436
NheI GCTAGC 1 cut(s) 1754
NlaIII CATG 9 cut(s) 189, 712, 872, 892, 1004, 1037, 1115, 1525, 1653
NlaIV GGNNCC 1 cut(s) 1480
NmuCI GTSAC 3 cut(s) 211, 470, 698
NsiI ATGCAT 2 cut(s) 714, 1614
NspI RCATGY 1 cut(s) 1115
NspV TTCGAA 1 cut(s) 1513
PagI TCATGA 1 cut(s) 1033
PceI AGGCCT 1 cut(s) 1684
PciI ACATGT 1 cut(s) 1111
PciSI GCTCTTC 3 cut(s) 147, 1563, 1832
PfeI GAWTC 4 cut(s) 324, 649, 865, 1212
PkrI GCNGC 5 cut(s) 438, 633, 693, 1030, 1327
PleI GAGTC 4 cut(s) 289, 1152, 1214, 1533
PpsI GAGTC 4 cut(s) 289, 1152, 1214, 1533
PscI ACATGT 1 cut(s) 1111
PspN4I GGNNCC 1 cut(s) 1480
PstNI CAGNNNCTG 1 cut(s) 1094
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 7 cut(s) 171, 193, 523, 600, 623, 1239, 1450
RsaNI GTAC 7 cut(s) 170, 192, 522, 599, 622, 1238, 1449
RseI CAYNNNNRTG 5 cut(s) 225, 873, 999, 1005, 1110
SapI GCTCTTC 3 cut(s) 147, 1563, 1832
SaqAI TTAA 6 cut(s) 177, 333, 609, 893, 924, 1833
SatI GCNGC 5 cut(s) 437, 632, 692, 1029, 1326
Sau3AI GATC 5 cut(s) 25, 409, 481, 530, 1436
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 4 cut(s) 290, 1153, 1215, 1534
ScrFI CCNGG 1 cut(s) 1152
SduI GDGCHC 2 cut(s) 662, 773
SfaNI GCATC 6 cut(s) 555, 976, 1015, 1255, 1621, 1801
SfuI TTCGAA 1 cut(s) 1513
SmiMI CAYNNNNRTG 5 cut(s) 225, 873, 999, 1005, 1110
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 1484
SseBI AGGCCT 1 cut(s) 1684
SsiI CCGC 5 cut(s) 491, 1134, 1702, 1762, 1870
SspMI CTAG 7 cut(s) 296, 321, 426, 516, 1296, 1485, 1755
StuI AGGCCT 1 cut(s) 1684
StyD4I CCNGG 1 cut(s) 1150
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 5 cut(s) 607, 790, 949, 1068, 1379
TaiI ACGT 1 cut(s) 1860
TaqI TCGA 6 cut(s) 240, 279, 575, 672, 1464, 1513
TatI WGTACW 3 cut(s) 521, 598, 621
TfiI GAWTC 4 cut(s) 324, 649, 865, 1212
Tru1I TTAA 6 cut(s) 177, 333, 609, 893, 924, 1833
Tru9I TTAA 6 cut(s) 177, 333, 609, 893, 924, 1833
TscAI CASTG 4 cut(s) 631, 1095, 1384, 1771
TseFI GTSAC 3 cut(s) 211, 470, 698
TseI GCWGC 5 cut(s) 436, 631, 691, 1028, 1325
Tsp45I GTSAC 3 cut(s) 211, 470, 698
TspRI CASTG 4 cut(s) 631, 1095, 1384, 1771
Vha464I CTTAAG 1 cut(s) 176
XapI RAATTY 9 cut(s) 38, 316, 614, 733, 821, 842, 1509, 1642, 1719
XbaI TCTAGA 1 cut(s) 320
XceI RCATGY 1 cut(s) 1115
XspI CTAG 7 cut(s) 296, 321, 426, 516, 1296, 1485, 1755
ZrmI AGTACT 1 cut(s) 523
Zsp2I ATGCAT 2 cut(s) 714, 1614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.