RLG00000017238

B3 domain-containing

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
14443515 .. 14446179
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017238

Sequence Viewer

Length: 1635 bp
ATGAGTTATATGAAGAAATATCAGGAAAAATATGGAAAAGAGCTATCAAAGGTTGTACATCTTAAGCTTCCATGTGGTACAGAATGGGAAGTAGAAGTCACAGGTCACAATGGTCACTTTTGGTTCGAGAAGGGGAAAAAGGATCTTTCCGCCGAAAAGGATGAGGGAGGCAAGTCAAGTACTACTCAAAGATCCCAAAAACCAACAACCAAGGTTCCTATGAGGATGCACTCCTCGGCTACAGGTGGAAAAGCTACATCTCTTCAGAGAGCTAAAGAATTCAAGTCTAGAAACCCTTCCTGTTTCTTGGTTCTCATGCACGCCTCATATATCAAAGGAACTATGCTCTGGCTGTCAACTGAGATCTCCATGAATATGTTGACATATCTTGGTAAGAATTCTGGTAATGTTAGCCTTAGTGTTTCGGAAGGAAGTACAAGGGGACTTTGGACTGTTGAAATGAAATATGATACAGAAAGAGCCACATTCCGGTTGCAGAGTGGTTGGAATAAATTTGTTCAAGGAAATAATTTGAATGCTGGTGATGTTTGTGGATTTATGTTGATTGACGAAATTGGACTTTTATTTGAAGTTAATATTTTCCGCAGAACAGAAGTTGTAACCTTATCACCAGGCTATGATGAATATGATGTGGATGATAAAGATGACCATGGGCTTCATGATGCCAATGATGACTATGCAGCTGATGAAAACAGGCACCGTTCCTTCAGAACTGTTCTACTGAAGTCTTCTATCAGTCATTGTTTGTGGTTATGTTCTAGATTTTCTCAGAAACATCTCAGTGATAAGCCTAGTAATGCTGAGCTGCATGTTCCTGGTGGGACGACAACTTGGCGTGTTGGATTGAAATATGAGGTTGGGAGAAAAAGAGCCAAATTTCAGTCTGGTTGGACCAAGTTTGTGAGAGACAATAATTTGAACATTGGAGATGAATGTGTGTTTGTGTTGACTGATGAAAATATATTTTCATTTGAAGTTATCATAGTAGCTGCAAAATCCACCTTGCCACCAGATGATGAGGATAATAAGAATGAGGATGATGATGATACTAGTGATGATGATTATAGTGACGATGAAGGTGATCATTCTGATGATGACAACGACCATAGCGATGAGGATGATGAATATTCAACAGCGCAACAGCTTCACAAGAGAAAGAGATCAAGTTCAAGTACCAAAAGTAGCATCAGAGATGTTGGTGCTTCGACTAGTACTGGACAATTATTAAAACGACAACCTGGTGTTCCAAGGAGTATGCATCCAATAAGGACCACGAAAAATGATATAGCTCTTCAGAGAGCTAAAGTCCTCAAGTATGTAGAACCTCATTTTGTGGTTCCAATGACTGCCAGAAATGTCCACGAATCTTTTCTTAAGGTGCCATCTGCTTTTGTCCAGAAACATCTTGATAAGAGGCCTAGTCATGTCAGCCTGTGGGGTAAAAATGACATATATTGGCCTGTCGAGTTACATTTCAGCAAAGGAGCTAGCTTCCAGGGCGGTTGGATTGAATTTGTGCAACGCCATAATCTGAAAGAGGGTGATGCATGTGGCTTTGAGTTGACTGAGAAGAGAAAGTTTCTGTTTGATGTTCACATTTTCCGCACCACATAG

Protein Analysis

545

Amino Acids

61.9

Weight (kDa)

6.44

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 105 - 203 1.8e-10 B3 DNA binding domain
B3 PF02362 245 - 335 1.8e-13 B3 DNA binding domain
B3 PF02362 451 - 543 6.7e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 717, 1399
AciI CCGC 4 cut(s) 150, 604, 1521, 1624
AclWI GGATC 2 cut(s) 150, 186
AcsI RAATTY 5 cut(s) 278, 397, 512, 896, 1532
AcuI CTGAAG 4 cut(s) 248, 712, 764, 1298
AfaI GTAC 6 cut(s) 57, 79, 181, 436, 1195, 1234
AfiI CCNNNNNNNGG 1 cut(s) 489
AflII CTTAAG 2 cut(s) 62, 1394
AhlI ACTAGT 2 cut(s) 1070, 1229
AjnI CCWGG 4 cut(s) 631, 835, 1258, 1515
Alw26I GTCTC 1 cut(s) 921
AlwI GGATC 2 cut(s) 150, 186
AoxI GGCC 2 cut(s) 1436, 1478
ApeKI GCWGC 3 cut(s) 701, 826, 1010
ApoI RAATTY 5 cut(s) 278, 397, 512, 896, 1532
Asp700I GAANNNNTTC 2 cut(s) 295, 1389
AspLEI GCGC 1 cut(s) 1159
AspS9I GGNCC 2 cut(s) 912, 1290
AsuHPI GGTGA 4 cut(s) 554, 621, 1112, 1574
AsuNHI GCTAGC 1 cut(s) 1508
AvaII GGWCC 2 cut(s) 912, 1290
BanI GGYRCC 2 cut(s) 717, 1399
BbsI GAAGAC 1 cut(s) 741
BbvI GCAGC 3 cut(s) 713, 813, 997
BccI CCATC 1 cut(s) 1411
BciT130I CCWGG 4 cut(s) 633, 837, 1260, 1517
BclI TGATCA 1 cut(s) 1102
BcoDI GTCTC 1 cut(s) 921
BcuI ACTAGT 2 cut(s) 1070, 1229
BfaI CTAG 7 cut(s) 288, 780, 813, 1071, 1230, 1440, 1509
BfmI CTRYAG 1 cut(s) 240
BfrI CTTAAG 2 cut(s) 62, 1394
BglII AGATCT 1 cut(s) 363
BisI GCNGC 3 cut(s) 702, 827, 1011
BlpI GCTNAGC 1 cut(s) 822
BlsI GCNGC 3 cut(s) 703, 828, 1012
BmcAI AGTACT 2 cut(s) 181, 1234
Bme1390I CCNGG 4 cut(s) 633, 837, 1260, 1517
Bme18I GGWCC 2 cut(s) 912, 1290
BmgT120I GGNCC 2 cut(s) 912, 1290
BmiI GGNNCC 4 cut(s) 216, 719, 1359, 1401
BmrFI CCNGG 4 cut(s) 633, 837, 1260, 1517
BmsI GCATC 5 cut(s) 216, 673, 1215, 1288, 1555
BmtI GCTAGC 1 cut(s) 1512
BpiI GAAGAC 1 cut(s) 741
Bpu1102I GCTNAGC 1 cut(s) 822
BpuEI CTTGAG 1 cut(s) 1316
BsaJI CCNNGG 5 cut(s) 210, 234, 670, 1268, 1516
BsaWI WCCGGW 1 cut(s) 489
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse1I ACTGG 1 cut(s) 1240
BseBI CCWGG 4 cut(s) 633, 837, 1260, 1517
BseDI CCNNGG 5 cut(s) 210, 234, 670, 1268, 1516
BseGI GGATG 6 cut(s) 166, 231, 661, 1063, 1144, 1279
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMII CTCAG 5 cut(s) 351, 803, 813, 814, 1578
BseNI ACTGG 1 cut(s) 1240
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 713, 813, 997
BshFI GGCC 2 cut(s) 1438, 1480
BshNI GGYRCC 2 cut(s) 717, 1399
BsiSI CCGG 1 cut(s) 490
BslFI GGGAC 2 cut(s) 456, 856
BslI CCNNNNNNNGG 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 921
BsmFI GGGAC 2 cut(s) 456, 856
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 2 cut(s) 1438, 1480
Bsp1407I TGTACA 1 cut(s) 55
Bsp143I GATC 5 cut(s) 142, 191, 363, 1102, 1181
Bsp1720I GCTNAGC 1 cut(s) 822
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 4 cut(s) 150, 604, 1521, 1624
BspANI GGCC 2 cut(s) 1438, 1480
BspCNI CTCAG 5 cut(s) 352, 802, 813, 814, 1579
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 4 cut(s) 216, 719, 1359, 1401
BspOI GCTAGC 1 cut(s) 1512
BspPI GGATC 2 cut(s) 150, 186
BspQI GCTCTTC 1 cut(s) 1317
BspT107I GGYRCC 2 cut(s) 717, 1399
BspTI CTTAAG 2 cut(s) 62, 1394
BsrGI TGTACA 1 cut(s) 55
BsrI ACTGG 1 cut(s) 1240
BssECI CCNNGG 5 cut(s) 210, 234, 670, 1268, 1516
BssMI GATC 5 cut(s) 142, 191, 363, 1102, 1181
BssT1I CCWWGG 3 cut(s) 210, 670, 1268
Bst2UI CCWGG 4 cut(s) 633, 837, 1260, 1517
Bst4CI ACNGT 3 cut(s) 454, 722, 736
Bst6I CTCTTC 3 cut(s) 267, 1317, 1586
BstAFI CTTAAG 2 cut(s) 62, 1394
BstAUI TGTACA 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 321, 1510
BstDEI CTNAG 6 cut(s) 360, 416, 789, 800, 822, 1587
BstDSI CCRYGG 1 cut(s) 670
BstF5I GGATG 6 cut(s) 166, 231, 661, 1063, 1144, 1279
BstHHI GCGC 1 cut(s) 1159
BstKTI GATC 5 cut(s) 145, 194, 366, 1105, 1184
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 5 cut(s) 142, 191, 363, 1102, 1181
BstMWI GCNNNNNNNGC 1 cut(s) 1518
BstNI CCWGG 4 cut(s) 633, 837, 1260, 1517
BstNSI RCATGY 2 cut(s) 833, 1572
BstSCI CCNGG 4 cut(s) 631, 835, 1258, 1515
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 713, 813, 997
BstV2I GAAGAC 1 cut(s) 741
BstX2I RGATCY 3 cut(s) 142, 191, 363
BstYI RGATCY 3 cut(s) 142, 191, 363
BsuRI GGCC 2 cut(s) 1438, 1480
BtgI CCRYGG 1 cut(s) 670
BtgZI GCGATG 1 cut(s) 1146
BtsCI GGATG 6 cut(s) 166, 231, 661, 1063, 1144, 1279
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 2 cut(s) 321, 1510
CciI TCATGA 1 cut(s) 679
CfoI GCGC 1 cut(s) 1159
Cfr13I GGNCC 2 cut(s) 912, 1290
CsiI ACCWGGT 1 cut(s) 1258
Csp6I GTAC 6 cut(s) 56, 78, 180, 435, 1194, 1233
CviAII CATG 8 cut(s) 72, 316, 370, 671, 680, 830, 1445, 1569
CviQI GTAC 6 cut(s) 56, 78, 180, 435, 1194, 1233
DdeI CTNAG 6 cut(s) 360, 416, 789, 800, 822, 1587
DpnI GATC 5 cut(s) 144, 193, 365, 1104, 1183
DpnII GATC 5 cut(s) 142, 191, 363, 1102, 1181
Eam1104I CTCTTC 3 cut(s) 267, 1317, 1586
EarI CTCTTC 3 cut(s) 267, 1317, 1586
EciI GGCGGA 1 cut(s) 139
Eco130I CCWWGG 3 cut(s) 210, 670, 1268
Eco147I AGGCCT 1 cut(s) 1438
Eco47I GGWCC 2 cut(s) 912, 1290
Eco57I CTGAAG 4 cut(s) 248, 712, 764, 1298
EcoRI GAATTC 2 cut(s) 278, 397
EcoRII CCWGG 4 cut(s) 631, 835, 1258, 1515
EcoT14I CCWWGG 3 cut(s) 210, 670, 1268
EcoT22I ATGCAT 2 cut(s) 1281, 1570
ErhI CCWWGG 3 cut(s) 210, 670, 1268
FaeI CATG 8 cut(s) 75, 319, 373, 674, 683, 833, 1448, 1572
FaqI GGGAC 2 cut(s) 456, 856
FatI CATG 8 cut(s) 71, 315, 369, 670, 679, 829, 1444, 1568
FbaI TGATCA 1 cut(s) 1102
Fnu4HI GCNGC 3 cut(s) 702, 827, 1011
FokI GGATG 6 cut(s) 173, 238, 668, 1070, 1151, 1266
Fsp4HI GCNGC 3 cut(s) 702, 827, 1011
FspBI CTAG 7 cut(s) 288, 780, 813, 1071, 1230, 1440, 1509
GlaI GCGC 1 cut(s) 1158
GluI GCNGC 3 cut(s) 702, 827, 1011
HaeIII GGCC 2 cut(s) 1438, 1480
HapII CCGG 1 cut(s) 490
HhaI GCGC 1 cut(s) 1159
Hin1II CATG 8 cut(s) 75, 319, 373, 674, 683, 833, 1448, 1572
Hin6I GCGC 1 cut(s) 1157
HinP1I GCGC 1 cut(s) 1157
HincII GTYRAC 4 cut(s) 357, 381, 969, 1584
HindII GTYRAC 4 cut(s) 357, 381, 969, 1584
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 1 cut(s) 1385
HpaII CCGG 1 cut(s) 490
HphI GGTGA 4 cut(s) 554, 621, 1112, 1574
Hpy166II GTNNAC 6 cut(s) 357, 381, 969, 1381, 1584, 1615
Hpy188I TCNGA 8 cut(s) 267, 427, 731, 792, 1111, 1211, 1317, 1554
Hpy188III TCNNGA 7 cut(s) 23, 127, 288, 680, 780, 1417, 1427
Hpy8I GTNNAC 6 cut(s) 357, 381, 969, 1381, 1584, 1615
HpyAV CCTTC 5 cut(s) 124, 306, 422, 736, 1091
HpyCH4III ACNGT 3 cut(s) 454, 722, 736
HpyCH4V TGCA 9 cut(s) 229, 319, 496, 701, 829, 1013, 1279, 1540, 1568
HpyF10VI GCNNNNNNNGC 1 cut(s) 1518
HpyF3I CTNAG 6 cut(s) 360, 416, 789, 800, 822, 1587
Hsp92II CATG 8 cut(s) 75, 319, 373, 674, 683, 833, 1448, 1572
HspAI GCGC 1 cut(s) 1157
Ksp22I TGATCA 1 cut(s) 1102
Kzo9I GATC 5 cut(s) 142, 191, 363, 1102, 1181
LguI GCTCTTC 1 cut(s) 1317
LmnI GCTCC 1 cut(s) 1505
Lsp1109I GCAGC 3 cut(s) 713, 813, 997
LweI GCATC 5 cut(s) 216, 673, 1215, 1288, 1555
MabI ACCWGGT 1 cut(s) 1258
MaeI CTAG 7 cut(s) 288, 780, 813, 1071, 1230, 1440, 1509
MaeIII GTNAC 6 cut(s) 97, 104, 113, 619, 1088, 1488
MalI GATC 5 cut(s) 144, 193, 365, 1104, 1183
MboI GATC 5 cut(s) 142, 191, 363, 1102, 1181
MboII GAAGA 5 cut(s) 25, 254, 741, 1304, 1603
MflI RGATCY 3 cut(s) 142, 191, 363
MluCI AATT 9 cut(s) 278, 397, 512, 529, 573, 896, 934, 1241, 1532
MmeI TCCRAC 4 cut(s) 485, 841, 890, 1505
Mph1103I ATGCAT 2 cut(s) 1281, 1570
MroXI GAANNNNTTC 2 cut(s) 295, 1389
MseI TTAA 4 cut(s) 63, 594, 1247, 1395
MslI CAYNNNNRTG 4 cut(s) 374, 801, 1110, 1131
MspA1I CMGCKG 1 cut(s) 704
MspCI CTTAAG 2 cut(s) 62, 1394
MspI CCGG 1 cut(s) 490
MspR9I CCNGG 4 cut(s) 633, 837, 1260, 1517
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 4 cut(s) 633, 837, 1260, 1517
MwoI GCNNNNNNNGC 1 cut(s) 1518
NcoI CCATGG 1 cut(s) 670
NdeII GATC 5 cut(s) 142, 191, 363, 1102, 1181
NheI GCTAGC 1 cut(s) 1508
NlaIII CATG 8 cut(s) 75, 319, 373, 674, 683, 833, 1448, 1572
NlaIV GGNNCC 4 cut(s) 216, 719, 1359, 1401
NmeAIII GCCGAG 1 cut(s) 215
NmuCI GTSAC 4 cut(s) 97, 104, 113, 1088
NsiI ATGCAT 2 cut(s) 1281, 1570
NspI RCATGY 2 cut(s) 833, 1572
PagI TCATGA 1 cut(s) 679
PceI AGGCCT 1 cut(s) 1438
PciSI GCTCTTC 1 cut(s) 1317
PcsI WCGNNNNNNNCGW 1 cut(s) 1128
PctI GAATGC 1 cut(s) 541
PdmI GAANNNNTTC 2 cut(s) 295, 1389
PfeI GAWTC 1 cut(s) 1385
PkrI GCNGC 3 cut(s) 703, 828, 1012
Psp6I CCWGG 4 cut(s) 631, 835, 1258, 1515
PspGI CCWGG 4 cut(s) 631, 835, 1258, 1515
PspN4I GGNNCC 4 cut(s) 216, 719, 1359, 1401
PspPI GGNCC 2 cut(s) 912, 1290
PsuI RGATCY 3 cut(s) 142, 191, 363
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 6 cut(s) 57, 79, 181, 436, 1195, 1234
RsaNI GTAC 6 cut(s) 56, 78, 180, 435, 1194, 1233
RseI CAYNNNNRTG 4 cut(s) 374, 801, 1110, 1131
SapI GCTCTTC 1 cut(s) 1317
SaqAI TTAA 4 cut(s) 63, 594, 1247, 1395
SatI GCNGC 3 cut(s) 702, 827, 1011
Sau3AI GATC 5 cut(s) 142, 191, 363, 1102, 1181
Sau96I GGNCC 2 cut(s) 912, 1290
ScaI AGTACT 2 cut(s) 181, 1234
ScrFI CCNGG 4 cut(s) 633, 837, 1260, 1517
SexAI ACCWGGT 1 cut(s) 1258
SfaNI GCATC 5 cut(s) 216, 673, 1215, 1288, 1555
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 2 cut(s) 912, 1290
SmiMI CAYNNNNRTG 4 cut(s) 374, 801, 1110, 1131
SmlI CTYRAG 3 cut(s) 62, 1331, 1394
SmoI CTYRAG 3 cut(s) 62, 1331, 1394
SpeI ACTAGT 2 cut(s) 1070, 1229
Sse9I AATT 9 cut(s) 278, 397, 512, 529, 573, 896, 934, 1241, 1532
SseBI AGGCCT 1 cut(s) 1438
SsiI CCGC 4 cut(s) 150, 604, 1521, 1624
SspI AATATT 2 cut(s) 598, 1148
SspMI CTAG 7 cut(s) 288, 780, 813, 1071, 1230, 1440, 1509
StuI AGGCCT 1 cut(s) 1438
StyD4I CCNGG 4 cut(s) 631, 835, 1258, 1515
StyI CCWWGG 3 cut(s) 210, 670, 1268
TaaI ACNGT 3 cut(s) 454, 722, 736
TaqI TCGA 3 cut(s) 126, 1226, 1485
TasI AATT 9 cut(s) 278, 397, 512, 529, 573, 896, 934, 1241, 1532
TatI WGTACW 4 cut(s) 55, 179, 434, 1232
TfiI GAWTC 1 cut(s) 1385
Tru1I TTAA 4 cut(s) 63, 594, 1247, 1395
Tru9I TTAA 4 cut(s) 63, 594, 1247, 1395
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 4 cut(s) 97, 104, 113, 1088
TseI GCWGC 3 cut(s) 701, 826, 1010
Tsp45I GTSAC 4 cut(s) 97, 104, 113, 1088
TspRI CASTG 1 cut(s) 808
Vha464I CTTAAG 2 cut(s) 62, 1394
VpaK11BI GGWCC 2 cut(s) 912, 1290
XapI RAATTY 5 cut(s) 278, 397, 512, 896, 1532
XbaI TCTAGA 2 cut(s) 287, 779
XceI RCATGY 2 cut(s) 833, 1572
XmnI GAANNNNTTC 2 cut(s) 295, 1389
XspI CTAG 7 cut(s) 288, 780, 813, 1071, 1230, 1440, 1509
ZrmI AGTACT 2 cut(s) 181, 1234
Zsp2I ATGCAT 2 cut(s) 1281, 1570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.