Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Forward (+)

77983138 .. 77983790

Gene Structure 653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCATCACAGGAATGTCCATGCACCTTTTCTGGAGTTGCCATTTGATTTTGCCAAGAAGCATCTTGATAAGCGGCCTAGTCATGTCAAGCTACAAGGTTCAAATGGGGAACCTTGGTCTGTCAAGTTATATTTTGCAAATGAACTAGCTGGCTTCCAAGATGGTTGGATTGAGTTTGTGCACGACCAGAATTTGAAAGAGGATGATGTGTGTGCCTTTGAATTGATTGATGATACTGAGTTTATATTTGATGTTCATGTTTACCGCATCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

91

Amino Acids

10.74

Weight (kDa)

5.33

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	10 - 89	1e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	73, 265
AcsI	RAATTY	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	102, 196, 221
AluBI	AGCT	2 cut(s)	91, 149
AluI	AGCT	2 cut(s)	91, 149
Alw21I	GWGCWC	1 cut(s)	183
Alw44I	GTGCAC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	190
BaeGI	GKGCMC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	78, 146
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	2 cut(s)	13, 70
BpmI	CTGGAG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	228
BseSI	GKGCMC	1 cut(s)	183
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	183
BspACI	CCGC	2 cut(s)	73, 265
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	151
CviAII	CATG	3 cut(s)	20, 83, 257
CviJI	RGCY	4 cut(s)	76, 91, 149, 153
CviKI_1	RGCY	4 cut(s)	76, 91, 149, 153
DdeI	CTNAG	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	3 cut(s)	23, 86, 260
FaiI	YATR	6 cut(s)	21, 84, 130, 245, 258, 274
FatI	CATG	3 cut(s)	19, 82, 256
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	2 cut(s)	78, 146
GluI	GCNGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	23, 86, 260
Hpy166II	GTNNAC	2 cut(s)	181, 262
Hpy188III	TCNNGA	2 cut(s)	32, 65
Hpy8I	GTNNAC	2 cut(s)	181, 262
HpyCH4V	TGCA	4 cut(s)	4, 23, 137, 181
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	23, 86, 260
LpnPI	CCDG	3 cut(s)	17, 135, 200
LweI	GCATC	2 cut(s)	13, 70
MaeI	CTAG	2 cut(s)	78, 146
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	2 cut(s)	190, 221
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	1 cut(s)	193
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	12
NlaIII	CATG	3 cut(s)	23, 86, 260
NlaIV	GGNNCC	1 cut(s)	111
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	12
SatI	GCNGC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	5 cut(s)	28, 93, 100, 115, 151
SfaNI	GCATC	2 cut(s)	13, 70
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	190, 221
SsiI	CCGC	2 cut(s)	73, 265
SspMI	CTAG	2 cut(s)	78, 146
StyI	CCWWGG	1 cut(s)	113
TasI	AATT	2 cut(s)	190, 221
TauI	GCSGC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	156, 245
VneI	GTGCAC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	190
XspI	CTAG	2 cut(s)	78, 146
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.