Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Reverse (-)

15466489 .. 15469540

Gene Structure 3052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG163600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGAGTTCTCCTTGCTGGAAAATTGATCAGCGACCAAAATTTTCTGCTACGCCTCTCAGCTTTCATAAGTCCATTTCAGAGAAAACTCACAGAGACAATAATCTTAGAGTTCCAAGGAGTTATGTGAAGAAATATGAGAAGAAATATGGAGAAGAGCTATCAAATATCGTACATCTTAAGCTTCCATGTGGTACAGAATGGGAAATAGAAGTCACAAGACATAATGGTGTCTTTTGGTTCGACAAGGGTTGGGAAACCTTTTGCAAGTTTTACTCCATCGAGTCTCGCTACTCGCTAGTTTTTCAATATGAAGGGAATTCTAGATTCAAAGTTAACATATTTGATAGAACAAACTCAGAGATTGAGTATCCTATCAAAACCCCGAAGAAGGAAGAAAATGATGTAGATGATCAATTTCCACCGGCTAGTCCTCTGCTGCCTCAAAAGAACAATATAGCAAGTTCAAATGGTGACAAAAAGGATCTTCCTGCGGAAGTAGATGAGGGAGACAAGTCTAGTAGTACTCAAAGATCACAAAAACCAACAACTAAGGTTCTTGGGAGGATGCACCCTTCGACTACAAGAGGAAGTGGAGCTGTACAGACAGTTAAAGAATTCAAGTACACTGAGCAGCCTTCTTGTTTTTTGATTCCTATGTGCCCCTCTTATATCGAAAAACATATGCTTCCAGTGCCTGCTAAGTTCCACAAACATGTTACTAAGAAGCCTGATACCGCTAACCTGAGTCTTCCCGGTGGGAGGAGAACTTGGCCTATTTCATTGAAATATGAGGTTTCAACAGAAAGAGTCAGATTCCAGTCTGGTTGGAGCAAGTTTGTACGAGACAATCATTTGAAAGTTGGAGATGCGTGTGAGTTTGTGTTGACTGATGAAACTAGACTTTCATTTGAAGTTCATATAGAAGCTGCTAAATGCACCTTGCCAGATGATGATGAAGCTGAAGATGAGGGTGATGACAGTGATAGTGATTGTGATGATGAATATCCATTAGCACCACGACTTCACAAAAGAAAGAGATCAAGTTCAAGTACCAAAAGCAACATCGAAGATGTAGATGGTTCCACTAGTAATAAACAATTCTTGAAACGAATTCGAAGGAGCATGAGTCCAATAGGGAACAAGAAAAAAGATAATGCTCTTCAGAGAGCTAATGCTTTCAAATCTGTAAAACCTTCTTTCGTGGTTGCAATGCATCCCACTTATGTCTGTGGAGGTGTTTTGAATTTGCCATGTGGTTTTGCCAAGAAACATCTTACTGAGAGGCCTAATCAGGTGAGCCTGCGGGGTTCAAATGGGAAAATTTGGTCTGTCAATTTCCATTTCAGCAACCAAGCTAGCTTCCGCAGTGGTTGGACTGACTTTGTGCGAGGCAATAATTTGGAAGAAGGTGATGCGTGTGCCTTTGAGTTGATTAAGAAGAGCAAGTTTTTATTTGACGTTCACTTTTTCCGCACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

493

Amino Acids

56.37

Weight (kDa)

9.0

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	26 - 116	1.2e-13	B3 DNA binding domain
B3	PF02362	216 - 307	2.9e-14	B3 DNA binding domain
B3	PF02362	411 - 492	1.3e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	491, 735, 1303, 1363, 1471
AclWI	GGATC	1 cut(s)	489
AcsI	RAATTY	6 cut(s)	38, 316, 614, 1110, 1243, 1320
AcuI	CTGAAG	2 cut(s)	981, 1145
AfaI	GTAC	7 cut(s)	171, 193, 523, 600, 623, 840, 1051
AfiI	CCNNNNNNNGG	2 cut(s)	388, 759
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	712
AhlI	ACTAGT	1 cut(s)	1085
AluBI	AGCT	9 cut(s)	60, 157, 181, 596, 926, 959, 1169, 1355, 1359
AluI	AGCT	9 cut(s)	60, 157, 181, 596, 926, 959, 1169, 1355, 1359
Alw26I	GTCTC	4 cut(s)	87, 288, 501, 837
AlwI	GGATC	1 cut(s)	489
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	2 cut(s)	770, 1283
ApeKI	GCWGC	3 cut(s)	436, 631, 926
ApoI	RAATTY	6 cut(s)	38, 316, 614, 1110, 1243, 1320
AsuC2I	CCSGG	1 cut(s)	753
AsuHPI	GGTGA	4 cut(s)	482, 983, 1306, 1421
AsuII	TTCGAA	1 cut(s)	1114
AsuNHI	GCTAGC	1 cut(s)	1355
BaeGI	GKGCMC	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	740
BbvI	GCAGC	3 cut(s)	423, 643, 913
BccI	CCATC	2 cut(s)	284, 1070
BciVI	GTATCC	1 cut(s)	378
BclI	TGATCA	2 cut(s)	25, 409
BcnI	CCSGG	1 cut(s)	753
BcoDI	GTCTC	4 cut(s)	87, 288, 501, 837
BcuI	ACTAGT	1 cut(s)	1085
BfaI	CTAG	7 cut(s)	296, 321, 426, 516, 897, 1086, 1356
BfrI	CTTAAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	378
BisI	GCNGC	3 cut(s)	437, 632, 927
BlsI	GCNGC	3 cut(s)	438, 633, 928
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	753
BmiI	GGNNCC	1 cut(s)	1081
BmrFI	CCNGG	1 cut(s)	753
BmsI	GCATC	4 cut(s)	555, 856, 1222, 1402
BmtI	GCTAGC	1 cut(s)	1359
BpiI	GAAGAC	1 cut(s)	740
Bpu14I	TTCGAA	1 cut(s)	1114
BpuMI	CCSGG	1 cut(s)	753
BsaBI	GATNNNNATC	1 cut(s)	1002
BsaJI	CCNNGG	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	1111, 1141
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 759
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	689, 817
Bse3DI	GCAATG	1 cut(s)	1215
Bse8I	GATNNNNATC	1 cut(s)	1002
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	570, 1213
BseJI	GATNNNNATC	1 cut(s)	1002
BseLI	CCNNNNNNNGG	2 cut(s)	388, 759
BseMI	GCAATG	1 cut(s)	1215
BseMII	CTCAG	5 cut(s)	70, 369, 618, 734, 1269
BseNI	ACTGG	2 cut(s)	689, 817
BseRI	GAGGAG	1 cut(s)	775
BseSI	GKGCMC	1 cut(s)	662
BseXI	GCAGC	3 cut(s)	423, 643, 913
BshFI	GGCC	2 cut(s)	772, 1285
BsiSI	CCGG	2 cut(s)	422, 753
BslI	CCNNNNNNNGG	2 cut(s)	388, 759
BsmAI	GTCTC	4 cut(s)	87, 288, 501, 837
BsnI	GGCC	2 cut(s)	772, 1285
Bsp119I	TTCGAA	1 cut(s)	1114
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp1407I	TGTACA	1 cut(s)	598
Bsp143I	GATC	5 cut(s)	25, 409, 481, 530, 1037
BspACI	CCGC	5 cut(s)	491, 735, 1303, 1363, 1471
BspANI	GGCC	2 cut(s)	772, 1285
BspCNI	CTCAG	5 cut(s)	69, 368, 619, 735, 1270
BspLI	GGNNCC	1 cut(s)	1081
BspOI	GCTAGC	1 cut(s)	1359
BspPI	GGATC	1 cut(s)	489
BspQI	GCTCTTC	3 cut(s)	147, 1164, 1433
BspT104I	TTCGAA	1 cut(s)	1114
BspTI	CTTAAG	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	1215
BsrFI	RCCGGY	1 cut(s)	421
BsrGI	TGTACA	1 cut(s)	598
BsrI	ACTGG	2 cut(s)	689, 817
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	5 cut(s)	25, 409, 481, 530, 1037
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	607, 980
Bst6I	CTCTTC	3 cut(s)	147, 1164, 1433
BstAFI	CTTAAG	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	598
BstBI	TTCGAA	1 cut(s)	1114
BstC8I	GCNNGC	3 cut(s)	696, 1301, 1357
BstDEI	CTNAG	9 cut(s)	56, 104, 355, 549, 627, 699, 720, 743, 1278
BstF5I	GGATG	2 cut(s)	570, 1213
BstKTI	GATC	5 cut(s)	28, 412, 484, 533, 1040
BstMAI	GTCTC	4 cut(s)	87, 288, 501, 837
BstMBI	GATC	5 cut(s)	25, 409, 481, 530, 1037
BstMWI	GCNNNNNNNGC	1 cut(s)	691
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	751
BstSLI	GKGCMC	1 cut(s)	662
BstV1I	GCAGC	3 cut(s)	423, 643, 913
BstV2I	GAAGAC	1 cut(s)	740
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuI	GTATCC	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	772, 1285
BtsCI	GGATG	2 cut(s)	570, 1213
BtsI	GCAGTG	1 cut(s)	1372
BtsIMutI	CAGTG	4 cut(s)	624, 696, 985, 1372
Cac8I	GCNNGC	3 cut(s)	696, 1301, 1357
CaiI	CAGNNNCTG	1 cut(s)	695
Cfr10I	RCCGGY	1 cut(s)	421
Csp6I	GTAC	7 cut(s)	170, 192, 522, 599, 622, 839, 1050
CviAII	CATG	4 cut(s)	186, 713, 1123, 1251
CviQI	GTAC	7 cut(s)	170, 192, 522, 599, 622, 839, 1050
DdeI	CTNAG	9 cut(s)	56, 104, 355, 549, 627, 699, 720, 743, 1278
DpnI	GATC	5 cut(s)	27, 411, 483, 532, 1039
DpnII	GATC	5 cut(s)	25, 409, 481, 530, 1037
Eam1104I	CTCTTC	3 cut(s)	147, 1164, 1433
EarI	CTCTTC	3 cut(s)	147, 1164, 1433
Eco130I	CCWWGG	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	1285
Eco57I	CTGAAG	2 cut(s)	981, 1145
EcoRI	GAATTC	3 cut(s)	316, 614, 1110
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	1215
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	4 cut(s)	189, 716, 1126, 1254
FatI	CATG	4 cut(s)	185, 712, 1122, 1250
FauI	CCCGC	1 cut(s)	1296
FauNDI	CATATG	1 cut(s)	681
FbaI	TGATCA	2 cut(s)	25, 409
Fnu4HI	GCNGC	3 cut(s)	437, 632, 927
FokI	GGATG	2 cut(s)	577, 1200
Fsp4HI	GCNGC	3 cut(s)	437, 632, 927
FspBI	CTAG	7 cut(s)	296, 321, 426, 516, 897, 1086, 1356
GluI	GCNGC	3 cut(s)	437, 632, 927
HaeIII	GGCC	2 cut(s)	772, 1285
HapII	CCGG	2 cut(s)	422, 753
Hin1II	CATG	4 cut(s)	189, 716, 1126, 1254
HincII	GTYRAC	2 cut(s)	334, 885
HindII	GTYRAC	2 cut(s)	334, 885
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	7 cut(s)	281, 324, 649, 745, 807, 813, 1126
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	2 cut(s)	422, 753
HphI	GGTGA	4 cut(s)	482, 983, 1306, 1421
Hpy166II	GTNNAC	4 cut(s)	334, 624, 885, 1462
Hpy188I	TCNGA	4 cut(s)	79, 358, 812, 1164
Hpy188III	TCNNGA	2 cut(s)	321, 1102
Hpy8I	GTNNAC	4 cut(s)	334, 624, 885, 1462
HpyAV	CCTTC	7 cut(s)	305, 382, 582, 645, 1110, 1203, 1400
HpyCH4III	ACNGT	2 cut(s)	607, 980
HpyCH4IV	ACGT	1 cut(s)	1458
HpyCH4V	TGCA	5 cut(s)	264, 568, 936, 1208, 1213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	691
HpyF3I	CTNAG	9 cut(s)	56, 104, 355, 549, 627, 699, 720, 743, 1278
HpySE526I	ACGT	1 cut(s)	1458
Hsp92II	CATG	4 cut(s)	189, 716, 1126, 1254
Ksp22I	TGATCA	2 cut(s)	25, 409
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	5 cut(s)	25, 409, 481, 530, 1037
LguI	GCTCTTC	3 cut(s)	147, 1164, 1433
LmnI	GCTCC	3 cut(s)	593, 828, 1119
Lsp1109I	GCAGC	3 cut(s)	423, 643, 913
LweI	GCATC	4 cut(s)	555, 856, 1222, 1402
MaeI	CTAG	7 cut(s)	296, 321, 426, 516, 897, 1086, 1356
MaeII	ACGT	1 cut(s)	1458
MaeIII	GTNAC	3 cut(s)	211, 470, 715
MalI	GATC	5 cut(s)	27, 411, 483, 532, 1039
MboI	GATC	5 cut(s)	25, 409, 481, 530, 1037
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	662
MlyI	GAGTC	4 cut(s)	290, 754, 816, 1135
MmeI	TCCRAC	3 cut(s)	806, 841, 1352
Mph1103I	ATGCAT	1 cut(s)	1215
MseI	TTAA	4 cut(s)	177, 333, 609, 1434
MslI	CAYNNNNRTG	2 cut(s)	225, 711
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	2 cut(s)	422, 753
MspR9I	CCNGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	1 cut(s)	691
NciI	CCSGG	1 cut(s)	753
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	5 cut(s)	25, 409, 481, 530, 1037
NheI	GCTAGC	1 cut(s)	1355
NlaIII	CATG	4 cut(s)	189, 716, 1126, 1254
NlaIV	GGNNCC	1 cut(s)	1081
NmuCI	GTSAC	2 cut(s)	211, 470
NsiI	ATGCAT	1 cut(s)	1215
NspI	RCATGY	1 cut(s)	716
NspV	TTCGAA	1 cut(s)	1114
PceI	AGGCCT	1 cut(s)	1285
PciI	ACATGT	1 cut(s)	712
PciSI	GCTCTTC	3 cut(s)	147, 1164, 1433
PfeI	GAWTC	3 cut(s)	324, 649, 813
PkrI	GCNGC	3 cut(s)	438, 633, 928
PleI	GAGTC	4 cut(s)	289, 753, 815, 1134
PpsI	GAGTC	4 cut(s)	289, 753, 815, 1134
PscI	ACATGT	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	1081
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	7 cut(s)	171, 193, 523, 600, 623, 840, 1051
RsaNI	GTAC	7 cut(s)	170, 192, 522, 599, 622, 839, 1050
RseI	CAYNNNNRTG	2 cut(s)	225, 711
SapI	GCTCTTC	3 cut(s)	147, 1164, 1433
SaqAI	TTAA	4 cut(s)	177, 333, 609, 1434
SatI	GCNGC	3 cut(s)	437, 632, 927
Sau3AI	GATC	5 cut(s)	25, 409, 481, 530, 1037
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	4 cut(s)	290, 754, 816, 1135
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	1 cut(s)	662
SfaNI	GCATC	4 cut(s)	555, 856, 1222, 1402
SfuI	TTCGAA	1 cut(s)	1114
SmiMI	CAYNNNNRTG	2 cut(s)	225, 711
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	1085
SseBI	AGGCCT	1 cut(s)	1285
SsiI	CCGC	5 cut(s)	491, 735, 1303, 1363, 1471
SspMI	CTAG	7 cut(s)	296, 321, 426, 516, 897, 1086, 1356
StuI	AGGCCT	1 cut(s)	1285
StyD4I	CCNGG	1 cut(s)	751
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	607, 980
TaiI	ACGT	1 cut(s)	1461
TaqI	TCGA	6 cut(s)	240, 279, 575, 672, 1065, 1114
TatI	WGTACW	3 cut(s)	521, 598, 621
TfiI	GAWTC	3 cut(s)	324, 649, 813
Tru1I	TTAA	4 cut(s)	177, 333, 609, 1434
Tru9I	TTAA	4 cut(s)	177, 333, 609, 1434
TscAI	CASTG	4 cut(s)	631, 696, 985, 1372
TseFI	GTSAC	2 cut(s)	211, 470
TseI	GCWGC	3 cut(s)	436, 631, 926
Tsp45I	GTSAC	2 cut(s)	211, 470
TspDTI	ATGAA	8 cut(s)	53, 324, 768, 894, 905, 906, 969, 1014
TspRI	CASTG	4 cut(s)	631, 696, 985, 1372
Vha464I	CTTAAG	1 cut(s)	176
XapI	RAATTY	6 cut(s)	38, 316, 614, 1110, 1243, 1320
XbaI	TCTAGA	1 cut(s)	320
XceI	RCATGY	1 cut(s)	716
XspI	CTAG	7 cut(s)	296, 321, 426, 516, 897, 1086, 1356
ZrmI	AGTACT	1 cut(s)	523
Zsp2I	ATGCAT	1 cut(s)	1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.