Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Reverse (-)

13442221 .. 13444400

Gene Structure 2180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCAAGAAAATGGTGTAAATGATCATTCTCCACTGGCTAGTCCTCCACAGCCTCAACAGAAGAAAGAAGCAACTTCAAGTGGTGGGAAAGAGGATCTTTCTGCCAACAAAGATGAGGGAGGCAAGTCTAGTACTACTCAAAGATCCCCAAAACCAACAGCCGAGGTTCCTATGAGGATGGACTCCTCGGCTACAGGTGAAAAAGCTACAGCTCTTCAGAAAGCTAATGAATTCAAGTCCAGAAACCCTTCCTGTTTCTTGGTTACCATGCACTCCTCATATATCAAAGGACATAGGCTCTGGCTGTCAGCTGAGATCTCCAAGAATATGTTCACAAATCTTAGTCAGAATTCGGGTAATGTTAGCCTTCGTGTTTTGGAAGGGAGTGCAAGGGAACCTTGGACTGTTGAAATGAAATATGATACTGAAAGAACCACATTCAAATTCCAGAGTGGTTGGAATAAATTTGTTCAAGACAATAAGTTGAATGCTGGTGATGTTTGTGGTTTTATGTTAATTGACGAAATTGGACTTTTATTTGAAGTTAATATTTTCCGTAGAACAGAAGTTGCAACCTCATCACCAGGCATTGATGAAGATGATGTGGATAATAAAGATGACCATGGGCTTCATGAGGCCAATGATGACTATGCAGCTGATGAAAACAGGCACCGTTCTTTCAGAAATGTCCTACAGAAGACTGCTATCAGTCATTATTTGTGGTTGTGTTCAAAATTTTCTGAGAAACATCTCAGTAAGAAGCCTAGTAATGCTGAGCTGCATGTTCCCGGTGGGAGGACAACGTGGCATGTTGGATTGAAATATGATGTTGGACGTAAAGGAGCCAAATTCCAGTCCGGTTGGACCAAGTTTGTGAGAGACAATAATTTGAAAAAGGGAGATGAGTGTGTGTTTGTGTTGACTGATGAAAATAAATTTTCATTTGAAGTTGTCATAATAGCTGCAAAATCCACCTTGCCACCAGAAGTTGCCATCTGTTTTTGTCGAGAAAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

339

Amino Acids

37.98

Weight (kDa)

7.14

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	86 - 187	7.7e-15	B3 DNA binding domain
B3	PF02362	237 - 320	3.9e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	669
AclWI	GGATC	2 cut(s)	102, 138
AcsI	RAATTY	7 cut(s)	230, 349, 443, 464, 734, 848, 935
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	795
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	7 cut(s)	206, 212, 224, 311, 656, 778, 962
AluI	AGCT	7 cut(s)	206, 212, 224, 311, 656, 778, 962
Alw26I	GTCTC	1 cut(s)	873
AlwI	GGATC	2 cut(s)	102, 138
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	3 cut(s)	653, 778, 962
ApoI	RAATTY	7 cut(s)	230, 349, 443, 464, 734, 848, 935
Asp700I	GAANNNNTTC	2 cut(s)	247, 329
AspS9I	GGNCC	1 cut(s)	864
AsuC2I	CCSGG	1 cut(s)	789
AsuHPI	GGTGA	3 cut(s)	209, 506, 573
AvaII	GGWCC	1 cut(s)	864
BanI	GGYRCC	1 cut(s)	669
BbsI	GAAGAC	1 cut(s)	704
BbvI	GCAGC	3 cut(s)	665, 765, 949
BccI	CCATC	2 cut(s)	172, 1001
BciT130I	CCWGG	1 cut(s)	585
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	789
BcoDI	GTCTC	1 cut(s)	873
BfaI	CTAG	3 cut(s)	39, 129, 765
BfmI	CTRYAG	3 cut(s)	192, 207, 692
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	3 cut(s)	654, 779, 963
BlpI	GCTNAGC	1 cut(s)	774
BlsI	GCNGC	3 cut(s)	655, 780, 964
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	2 cut(s)	585, 789
Bme18I	GGWCC	1 cut(s)	864
BmgT120I	GGNCC	1 cut(s)	864
BmiI	GGNNCC	4 cut(s)	168, 396, 671, 844
BmrFI	CCNGG	2 cut(s)	585, 789
BpiI	GAAGAC	1 cut(s)	704
Bpu1102I	GCTNAGC	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	789
BsaJI	CCNNGG	4 cut(s)	162, 186, 398, 622
BsaWI	WCCGGW	1 cut(s)	857
Bsc4I	CCNNNNNNNGG	1 cut(s)	795
Bse1I	ACTGG	2 cut(s)	39, 853
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	4 cut(s)	162, 186, 398, 622
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	795
BseMII	CTCAG	4 cut(s)	303, 732, 765, 766
BseNI	ACTGG	2 cut(s)	39, 853
BseRI	GAGGAG	2 cut(s)	175, 265
BseXI	GCAGC	3 cut(s)	665, 765, 949
BshFI	GGCC	1 cut(s)	638
BshNI	GGYRCC	1 cut(s)	669
BsiSI	CCGG	2 cut(s)	789, 858
BslI	CCNNNNNNNGG	1 cut(s)	795
BsmAI	GTCTC	1 cut(s)	873
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	638
Bsp143I	GATC	4 cut(s)	22, 94, 143, 315
Bsp1720I	GCTNAGC	1 cut(s)	774
Bsp19I	CCATGG	1 cut(s)	622
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	4 cut(s)	304, 733, 765, 766
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	4 cut(s)	168, 396, 671, 844
BspPI	GGATC	2 cut(s)	102, 138
BspQI	GCTCTTC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	669
BsrI	ACTGG	2 cut(s)	39, 853
BssECI	CCNNGG	4 cut(s)	162, 186, 398, 622
BssMI	GATC	4 cut(s)	22, 94, 143, 315
BssT1I	CCWWGG	2 cut(s)	398, 622
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	2 cut(s)	406, 674
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	5 cut(s)	312, 341, 741, 752, 774
BstDSI	CCRYGG	1 cut(s)	622
BstEII	GGTNACC	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	4 cut(s)	25, 97, 146, 318
BstMAI	GTCTC	1 cut(s)	873
BstMBI	GATC	4 cut(s)	22, 94, 143, 315
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	2 cut(s)	785, 812
BstPI	GGTNACC	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	583, 787
BstSFI	CTRYAG	3 cut(s)	192, 207, 692
BstV1I	GCAGC	3 cut(s)	665, 765, 949
BstV2I	GAAGAC	1 cut(s)	704
BstX2I	RGATCY	3 cut(s)	94, 143, 315
BstYI	RGATCY	3 cut(s)	94, 143, 315
BsuRI	GGCC	1 cut(s)	638
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	32
CciI	TCATGA	1 cut(s)	631
Cfr13I	GGNCC	1 cut(s)	864
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	5 cut(s)	268, 623, 632, 782, 809
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	5 cut(s)	312, 341, 741, 752, 774
DpnI	GATC	4 cut(s)	24, 96, 145, 317
DpnII	GATC	4 cut(s)	22, 94, 143, 315
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	398, 622
Eco47I	GGWCC	1 cut(s)	864
Eco57I	CTGAAG	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	262
EcoRI	GAATTC	2 cut(s)	230, 349
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	2 cut(s)	398, 622
ErhI	CCWWGG	2 cut(s)	398, 622
FaeI	CATG	5 cut(s)	271, 626, 635, 785, 812
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 382, 414
FatI	CATG	5 cut(s)	267, 622, 631, 781, 808
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	3 cut(s)	654, 779, 963
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	654, 779, 963
FspBI	CTAG	3 cut(s)	39, 129, 765
GluI	GCNGC	3 cut(s)	654, 779, 963
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	2 cut(s)	789, 858
Hin1II	CATG	5 cut(s)	271, 626, 635, 785, 812
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	2 cut(s)	789, 858
HphI	GGTGA	3 cut(s)	209, 506, 573
Hpy166II	GTNNAC	2 cut(s)	333, 921
Hpy188I	TCNGA	4 cut(s)	219, 348, 683, 742
Hpy188III	TCNNGA	6 cut(s)	240, 448, 473, 632, 1007, 1017
Hpy8I	GTNNAC	2 cut(s)	333, 921
HpyAV	CCTTC	3 cut(s)	258, 374, 377
HpyCH4III	ACNGT	2 cut(s)	406, 674
HpyCH4IV	ACGT	2 cut(s)	803, 835
HpyCH4V	TGCA	7 cut(s)	4, 271, 389, 572, 653, 781, 965
HpyF3I	CTNAG	5 cut(s)	312, 341, 741, 752, 774
HpySE526I	ACGT	2 cut(s)	803, 835
Hsp92II	CATG	5 cut(s)	271, 626, 635, 785, 812
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	4 cut(s)	22, 94, 143, 315
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	842
Lsp1109I	GCAGC	3 cut(s)	665, 765, 949
MaeI	CTAG	3 cut(s)	39, 129, 765
MaeII	ACGT	2 cut(s)	803, 835
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	4 cut(s)	24, 96, 145, 317
MboI	GATC	4 cut(s)	22, 94, 143, 315
MboII	GAAGA	4 cut(s)	73, 206, 608, 709
MflI	RGATCY	3 cut(s)	94, 143, 315
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	4 cut(s)	437, 793, 811, 842
MroXI	GAANNNNTTC	2 cut(s)	247, 329
MseI	TTAA	2 cut(s)	515, 546
MspA1I	CMGCKG	2 cut(s)	311, 656
MspI	CCGG	2 cut(s)	789, 858
MspR9I	CCNGG	2 cut(s)	585, 789
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	585
NciI	CCSGG	1 cut(s)	789
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	4 cut(s)	22, 94, 143, 315
NlaIII	CATG	5 cut(s)	271, 626, 635, 785, 812
NlaIV	GGNNCC	4 cut(s)	168, 396, 671, 844
NmeAIII	GCCGAG	2 cut(s)	167, 187
NspI	RCATGY	2 cut(s)	785, 812
PagI	TCATGA	1 cut(s)	631
PciSI	GCTCTTC	1 cut(s)	219
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	2 cut(s)	247, 329
PkrI	GCNGC	3 cut(s)	655, 780, 964
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	583
PspEI	GGTNACC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	4 cut(s)	168, 396, 671, 844
PspPI	GGNCC	1 cut(s)	864
PsuI	RGATCY	3 cut(s)	94, 143, 315
PvuII	CAGCTG	2 cut(s)	311, 656
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	515, 546
SatI	GCNGC	3 cut(s)	654, 779, 963
Sau3AI	GATC	4 cut(s)	22, 94, 143, 315
Sau96I	GGNCC	1 cut(s)	864
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	585, 789
SfcI	CTRYAG	3 cut(s)	192, 207, 692
SinI	GGWCC	1 cut(s)	864
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	3 cut(s)	39, 129, 765
StyD4I	CCNGG	2 cut(s)	583, 787
StyI	CCWWGG	2 cut(s)	398, 622
TaaI	ACNGT	2 cut(s)	406, 674
TaiI	ACGT	2 cut(s)	806, 838
TaqI	TCGA	1 cut(s)	1006
TatI	WGTACW	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	515, 546
Tru9I	TTAA	2 cut(s)	515, 546
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	3 cut(s)	653, 778, 962
TspDTI	ATGAA	7 cut(s)	243, 428, 609, 620, 675, 930, 942
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	864
XapI	RAATTY	7 cut(s)	230, 349, 443, 464, 734, 848, 935
XceI	RCATGY	2 cut(s)	785, 812
XmnI	GAANNNNTTC	2 cut(s)	247, 329
XspI	CTAG	3 cut(s)	39, 129, 765
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.