Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Reverse (-)

14991752 .. 14994296

Gene Structure 2545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47782

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGACTTCTCTTTGCCGGAAAAACGATTCACGTCCAAAGTTTTCTGCTACCAAATTCAGTTTCATTAAGTTTATTTCGGAGAGCAGTTCTAAAGAAACAAACCTTAAAGTTCCTACGAGTTATGTGAAGAAATATCAGGAGAAATATGGAAAAGAGCTATCAAAGGTTGTACATCTTAAGCTTCCATGTGGTACAGAATGGGAAGTAGAAGTCACAGGTCACAATGGTCACTTTTGGTTCGAGAAGGGTTGGGAAGATTTTTGCAAGTTTTACTCCCTCCAGTCACGCGACTCGCTGGCTTTTCAATATGAAGCAAATTCCAGATTCAAAGTTAACATCTTTGATAAATCAAAAACAGAGATTGACTATCCTATCAAAAGCCCTGATATGCAAGAAAATGGTGTAAATGATCATTCTCCACCGGCTAGTCCTCCACTGCCTCAAAAGAAGAAAGAAGCAACTTCAAGTGGTGGGAAAAAGGATCTTTCTGCCGAAAAGGATGAGGGAGGGAAGTCAAGTACTACTCAAAGATCCCAAAAACCAACAACCGAGGTTCCTATGAGGATGCACTCCTCGGCTATAGGTGGAAAAGCTACAGCTCTTCAGAGAGCTAAAGAATTCAAGTCTAGAAACCCTTCCTGCTTCTTGGTTATCATGCACGCCTCATATATCAAAGGAACTATGCTCTGGCTGTCAACTGAGATCTCCATGAATATGTTAACATATCTTGGTCAGAATTCTGGTAATGTTAGCCTTCGTGTTTCGGAAGGGAGTACAAGGGGACTTTGGACTGTTGAAATGAAATATGATACAGAAAGAGCCACATTCCGGTTGCAGAGTGGTTGGAATAAATTTGTTCAAGGAAATAATTTGAATGCTGGTGATGTTTGTGGTTTTATGTTAATTGACGAAATTGGACTTTTATTTGAAGTTAATATTTTCCGCAGAACAGAAGTTGCAACCTCATCACCAGGCTATGATGAATATGATGTGGATGACAAAGATGACCATGGGCTTCATGATGCCAATGATGACTATGCAGCTGATGAAAACAGGCACCGTTCTTTCAGAACTGTCCTACTGAAGTCTTCTATCAGTCATTGTTTGTGGTTATGTTCTAGGTTTTCTCAGAAACATCTCAGTGATAAGCCTAGTAATGCCGAGCTGCATGTTCCTGGTGGGACGACAACTTGGTGTGTTGGATTGAAATATGAGGTTGGGAGAAAAAGAGCCAAATTTCAGTCTGGTTGGACCAAGTTTGTGAGAGACAATAATTTGAACATTGGAGATGAGTGTGTGTTTGTGTTGACTGATGAAAATATATTTTCATTTGAAGTTGTCATAGTAGCTGCAAAATCCACCTTGCCACCAGGTAAGTTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

461

Amino Acids

52.11

Weight (kDa)

8.61

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	21 - 116	4.6e-15	B3 DNA binding domain
B3	PF02362	223 - 316	1e-10	B3 DNA binding domain
B3	PF02362	358 - 448	3.8e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1056
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	943
AclWI	GGATC	2 cut(s)	489, 525
AcsI	RAATTY	6 cut(s)	53, 316, 617, 736, 851, 1235
AcuI	CTGAAG	2 cut(s)	587, 1103
AfaI	GTAC	4 cut(s)	171, 193, 520, 775
AfiI	CCNNNNNNNGG	1 cut(s)	828
AflII	CTTAAG	1 cut(s)	176
AjiI	CACGTC	1 cut(s)	32
AjnI	CCWGG	3 cut(s)	970, 1174, 1369
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	8 cut(s)	157, 181, 593, 599, 611, 1043, 1165, 1349
AluI	AGCT	8 cut(s)	157, 181, 593, 599, 611, 1043, 1165, 1349
Alw26I	GTCTC	1 cut(s)	1260
AlwI	GGATC	2 cut(s)	489, 525
ApeKI	GCWGC	3 cut(s)	1040, 1165, 1349
ApoI	RAATTY	6 cut(s)	53, 316, 617, 736, 851, 1235
Asp700I	GAANNNNTTC	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	1251
AsuHPI	GGTGA	2 cut(s)	893, 960
AvaII	GGWCC	1 cut(s)	1251
BanI	GGYRCC	1 cut(s)	1056
BbsI	GAAGAC	1 cut(s)	1080
BbvI	GCAGC	3 cut(s)	1052, 1152, 1336
BciT130I	CCWGG	3 cut(s)	972, 1176, 1371
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	1260
BfaI	CTAG	4 cut(s)	426, 627, 1119, 1152
BfmI	CTRYAG	2 cut(s)	579, 594
BfrI	CTTAAG	1 cut(s)	176
BglII	AGATCT	1 cut(s)	702
BisI	GCNGC	3 cut(s)	1041, 1166, 1350
BlsI	GCNGC	3 cut(s)	1042, 1167, 1351
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	3 cut(s)	972, 1176, 1371
Bme18I	GGWCC	1 cut(s)	1251
BmgBI	CACGTC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	1251
BmiI	GGNNCC	2 cut(s)	555, 1058
BmrFI	CCNGG	3 cut(s)	972, 1176, 1371
BmsI	GCATC	2 cut(s)	555, 1012
BpiI	GAAGAC	1 cut(s)	1080
BpmI	CTGGAG	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	549, 573, 1009
BsaWI	WCCGGW	1 cut(s)	828
Bsc4I	CCNNNNNNNGG	1 cut(s)	828
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	280
BseBI	CCWGG	3 cut(s)	972, 1176, 1371
BseDI	CCNNGG	3 cut(s)	549, 573, 1009
BseGI	GGATG	3 cut(s)	505, 570, 1000
BseLI	CCNNNNNNNGG	1 cut(s)	828
BseMII	CTCAG	3 cut(s)	690, 1142, 1153
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	562
BseXI	GCAGC	3 cut(s)	1052, 1152, 1336
Bsh1236I	CGCG	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	1056
BsiSI	CCGG	3 cut(s)	16, 422, 829
BslFI	GGGAC	2 cut(s)	795, 1195
BslI	CCNNNNNNNGG	1 cut(s)	828
BsmAI	GTCTC	1 cut(s)	1260
BsmFI	GGGAC	2 cut(s)	795, 1195
BsmI	GAATGC	1 cut(s)	880
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	409, 481, 530, 702
Bsp19I	CCATGG	1 cut(s)	1009
BspACI	CCGC	1 cut(s)	943
BspCNI	CTCAG	3 cut(s)	691, 1141, 1152
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	1018
BspLI	GGNNCC	2 cut(s)	555, 1058
BspPI	GGATC	2 cut(s)	489, 525
BspQI	GCTCTTC	1 cut(s)	606
BspT107I	GGYRCC	1 cut(s)	1056
BspTI	CTTAAG	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	421
BsrGI	TGTACA	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	3 cut(s)	549, 573, 1009
BssMI	GATC	4 cut(s)	409, 481, 530, 702
BssT1I	CCWWGG	1 cut(s)	1009
Bst2UI	CCWGG	3 cut(s)	972, 1176, 1371
Bst4CI	ACNGT	3 cut(s)	793, 1061, 1075
Bst6I	CTCTTC	1 cut(s)	606
BstAFI	CTTAAG	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	297, 660
BstDEI	CTNAG	3 cut(s)	699, 1128, 1139
BstDSI	CCRYGG	1 cut(s)	1009
BstF5I	GGATG	3 cut(s)	505, 570, 1000
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	4 cut(s)	412, 484, 533, 705
BstMAI	GTCTC	1 cut(s)	1260
BstMBI	GATC	4 cut(s)	409, 481, 530, 702
BstNI	CCWGG	3 cut(s)	972, 1176, 1371
BstNSI	RCATGY	1 cut(s)	1172
BstSCI	CCNGG	3 cut(s)	970, 1174, 1369
BstSFI	CTRYAG	2 cut(s)	579, 594
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	1052, 1152, 1336
BstV2I	GAAGAC	1 cut(s)	1080
BstX2I	RGATCY	3 cut(s)	481, 530, 702
BstYI	RGATCY	3 cut(s)	481, 530, 702
BtgI	CCRYGG	1 cut(s)	1009
BtrI	CACGTC	1 cut(s)	32
BtsCI	GGATG	3 cut(s)	505, 570, 1000
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	2 cut(s)	434, 1147
Cac8I	GCNNGC	2 cut(s)	297, 660
CciI	TCATGA	1 cut(s)	1018
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	1251
CsiI	ACCWGGT	1 cut(s)	1369
Csp6I	GTAC	4 cut(s)	170, 192, 519, 774
CviAII	CATG	6 cut(s)	186, 655, 709, 1010, 1019, 1169
CviQI	GTAC	4 cut(s)	170, 192, 519, 774
DdeI	CTNAG	3 cut(s)	699, 1128, 1139
DpnI	GATC	4 cut(s)	411, 483, 532, 704
DpnII	GATC	4 cut(s)	409, 481, 530, 702
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco130I	CCWWGG	1 cut(s)	1009
Eco47I	GGWCC	1 cut(s)	1251
Eco57I	CTGAAG	2 cut(s)	587, 1103
EcoRI	GAATTC	2 cut(s)	617, 736
EcoRII	CCWGG	3 cut(s)	970, 1174, 1369
EcoT14I	CCWWGG	1 cut(s)	1009
ErhI	CCWWGG	1 cut(s)	1009
FaeI	CATG	6 cut(s)	189, 658, 712, 1013, 1022, 1172
FaqI	GGGAC	2 cut(s)	795, 1195
FatI	CATG	6 cut(s)	185, 654, 708, 1009, 1018, 1168
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	1041, 1166, 1350
FokI	GGATG	3 cut(s)	512, 577, 1007
Fsp4HI	GCNGC	3 cut(s)	1041, 1166, 1350
FspBI	CTAG	4 cut(s)	426, 627, 1119, 1152
GluI	GCNGC	3 cut(s)	1041, 1166, 1350
GsuI	CTGGAG	1 cut(s)	263
HapII	CCGG	3 cut(s)	16, 422, 829
Hin1II	CATG	6 cut(s)	189, 658, 712, 1013, 1022, 1172
HincII	GTYRAC	4 cut(s)	334, 696, 720, 1308
HindII	GTYRAC	4 cut(s)	334, 696, 720, 1308
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	26, 290, 324
HpaI	GTTAAC	2 cut(s)	334, 720
HpaII	CCGG	3 cut(s)	16, 422, 829
HphI	GGTGA	2 cut(s)	893, 960
Hpy166II	GTNNAC	4 cut(s)	334, 696, 720, 1308
Hpy188I	TCNGA	6 cut(s)	79, 606, 735, 766, 1070, 1131
Hpy188III	TCNNGA	5 cut(s)	137, 241, 321, 627, 1019
Hpy8I	GTNNAC	4 cut(s)	334, 696, 720, 1308
HpyAV	CCTTC	4 cut(s)	238, 645, 761, 764
HpyCH4III	ACNGT	3 cut(s)	793, 1061, 1075
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	9 cut(s)	264, 391, 568, 658, 835, 959, 1040, 1168, 1352
HpyF3I	CTNAG	3 cut(s)	699, 1128, 1139
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	6 cut(s)	189, 658, 712, 1013, 1022, 1172
Ksp22I	TGATCA	1 cut(s)	409
KspAI	GTTAAC	2 cut(s)	334, 720
Kzo9I	GATC	4 cut(s)	409, 481, 530, 702
LguI	GCTCTTC	1 cut(s)	606
Lsp1109I	GCAGC	3 cut(s)	1052, 1152, 1336
LweI	GCATC	2 cut(s)	555, 1012
MabI	ACCWGGT	1 cut(s)	1369
MaeI	CTAG	4 cut(s)	426, 627, 1119, 1152
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	4 cut(s)	211, 218, 227, 282
MalI	GATC	4 cut(s)	411, 483, 532, 704
MboI	GATC	4 cut(s)	409, 481, 530, 702
MboII	GAAGA	5 cut(s)	139, 266, 460, 593, 1080
MflI	RGATCY	3 cut(s)	481, 530, 702
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	3 cut(s)	824, 1180, 1229
MroXI	GAANNNNTTC	1 cut(s)	634
MseI	TTAA	8 cut(s)	66, 105, 177, 333, 719, 902, 933, 1384
MslI	CAYNNNNRTG	2 cut(s)	713, 1140
MspA1I	CMGCKG	1 cut(s)	1043
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	3 cut(s)	16, 422, 829
MspR9I	CCNGG	3 cut(s)	972, 1176, 1371
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	3 cut(s)	972, 1176, 1371
MvnI	CGCG	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	1009
NdeII	GATC	4 cut(s)	409, 481, 530, 702
NlaIII	CATG	6 cut(s)	189, 658, 712, 1013, 1022, 1172
NlaIV	GGNNCC	2 cut(s)	555, 1058
NmeAIII	GCCGAG	2 cut(s)	554, 1186
NmuCI	GTSAC	4 cut(s)	211, 218, 227, 282
NspI	RCATGY	1 cut(s)	1172
PagI	TCATGA	1 cut(s)	1018
PciSI	GCTCTTC	1 cut(s)	606
PctI	GAATGC	1 cut(s)	880
PdmI	GAANNNNTTC	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	26, 324
PkrI	GCNGC	3 cut(s)	1042, 1167, 1351
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp6I	CCWGG	3 cut(s)	970, 1174, 1369
PspGI	CCWGG	3 cut(s)	970, 1174, 1369
PspN4I	GGNNCC	2 cut(s)	555, 1058
PspPI	GGNCC	1 cut(s)	1251
PsuI	RGATCY	3 cut(s)	481, 530, 702
PvuII	CAGCTG	1 cut(s)	1043
RsaI	GTAC	4 cut(s)	171, 193, 520, 775
RsaNI	GTAC	4 cut(s)	170, 192, 519, 774
RseI	CAYNNNNRTG	2 cut(s)	713, 1140
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	8 cut(s)	66, 105, 177, 333, 719, 902, 933, 1384
SatI	GCNGC	3 cut(s)	1041, 1166, 1350
Sau3AI	GATC	4 cut(s)	409, 481, 530, 702
Sau96I	GGNCC	1 cut(s)	1251
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	3 cut(s)	972, 1176, 1371
SexAI	ACCWGGT	1 cut(s)	1369
SfaNI	GCATC	2 cut(s)	555, 1012
SfcI	CTRYAG	2 cut(s)	579, 594
SinI	GGWCC	1 cut(s)	1251
SmiMI	CAYNNNNRTG	2 cut(s)	713, 1140
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	1 cut(s)	943
SspI	AATATT	1 cut(s)	937
SspMI	CTAG	4 cut(s)	426, 627, 1119, 1152
StyD4I	CCNGG	3 cut(s)	970, 1174, 1369
StyI	CCWWGG	1 cut(s)	1009
TaaI	ACNGT	3 cut(s)	793, 1061, 1075
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	240
TatI	WGTACW	3 cut(s)	169, 518, 773
TfiI	GAWTC	2 cut(s)	26, 324
Tru1I	TTAA	8 cut(s)	66, 105, 177, 333, 719, 902, 933, 1384
Tru9I	TTAA	8 cut(s)	66, 105, 177, 333, 719, 902, 933, 1384
TscAI	CASTG	2 cut(s)	441, 1147
TseFI	GTSAC	4 cut(s)	211, 218, 227, 282
TseI	GCWGC	3 cut(s)	1040, 1165, 1349
Tsp45I	GTSAC	4 cut(s)	211, 218, 227, 282
TspDTI	ATGAA	9 cut(s)	52, 324, 725, 815, 996, 1007, 1062, 1317, 1329
TspRI	CASTG	2 cut(s)	441, 1147
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	1251
XapI	RAATTY	6 cut(s)	53, 316, 617, 736, 851, 1235
XbaI	TCTAGA	1 cut(s)	626
XceI	RCATGY	1 cut(s)	1172
XmnI	GAANNNNTTC	1 cut(s)	634
XspI	CTAG	4 cut(s)	426, 627, 1119, 1152
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.