Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007545

Physical Location & Seq

Genomic Coordinates Reverse (-)

14997088 .. 14998673

Gene Structure 1586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGTTCTCCTTGCTGGAAAATTGATCAGCGACCAAAATTTTCTGCTACGCCTCTCAGCTTTCATAAGTCCATTTCGGAGAAAACTCACAGAGACAATAATCTTAGAGTTCCAAGGAGTTATGTGAAGAAATATGAAAAGAAATATGGAGAAGAGCTATCAAATATCGTACATCTTAAGCTTCCATGTGGTACAGAATGGGAAATAGAAGTCACAAGACATAATGGTGTCTTTTGGTTCGACAAGGGTTGGGAAACCTTATGCAAGTTTTACTCCATCGAGTATCGCTACTCGCTAGTTTTTCAATATGAAGGGAATTCTAGATTCAAAGTTAACATATTTGATAGAACAAACTCAGAGATTGAGTATCCTATCAAAACCCCCAAGAAGGAAGAAAATGATGTAGATGATCAATTTCCACCGGCTAGTCCTCTGCTGCCTCAAAAGAACAATATAGCAAGTTCAAATATTGGTGACAAAAAGGATCTTCCTGCGGAAGTAGATGAGGGAGACAAGTCTAGTAATACTCAAAGATCACAAAAACCAACAACTGAGGTTCTTGGGAGGATGCACCCTTCGACTACAAGAGGAAGTGGAGCTGTACAGACAGTTAAAGAATTCAAGTACACTGAGCAGCCTTCTTGTTTTTTGGTTCCTATGTGCCCCTCTTATATCGAAAAACATATGCTTTGGCTGCCAAGTGACTTTGCCATGCATGTGAAACATCTTATTACGAATTCTGGTAATCTTACCCTTCGTGTTTCGGAAGGGAGCACAACGAGAACTTGGACTGTTGGAATGAAATATGAAAAAGAAAGAGCCAAATTCCAGTCTGGATGGAGTGAATTTGTGCAAGACAATAAACTAAATCATGGTGATGTGTGTGACCTCATGTTAATTGACAAAAATGAACTTTTATTTGAAGTTAAGATTTTCCGAGCAAGAGAAGCTGTGGATTGCACCTTCTCACCGGATATTGATGAAGCTGATGCACATCACGAGCATGATGATGACAATGGTGATAATGATGCTGCTCATGACAATCGTTCATTCACAATTATCATACGACAGTCTTATACTACTCGTTTGGTAAGCTTTTTCTACAGACAACAAGATGATAACATGTATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

377

Amino Acids

43.79

Weight (kDa)

6.04

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	26 - 116	3.4e-12	B3 DNA binding domain
B3	PF02362	216 - 314	5.8e-16	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0103451 RchiOBHm_Chr2g0103461 RchiOBHm_Chr2g0103471 RchiOBHm_Chr2g0103481
rosa_laevigata	RLG00000017237 RLG00000017238 RLG00000017239
rosa_multiflora	Rmu_co8300361.1_g000001 Rmu_co8395735.1_g000001 Rmu_sc0001852.1_g000027 Rmu_sc0011039.1_g000006
rosa_roxburghii	Rroxscaffold_2G00139600 Rroxscaffold_2G00139610 Rroxscaffold_2G00139620
rosa_rugosa	Rorug02G0115000 Rorug02G0115100
rosa_samantha	Rh2AG163400 Rh2AG163500 Rh2AG163600 Rh2BG170500 Rh2BG170600 Rh2BG170700 Rh2DG169000
rosa_wichuraiana	Rw2G012850 Rw2G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	494
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	6 cut(s)	38, 316, 617, 736, 824, 845
AfaI	GTAC	4 cut(s)	171, 193, 603, 626
AfiI	CCNNNNNNNGG	1 cut(s)	388
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	1122
AgsI	TTSAA	5 cut(s)	305, 328, 465, 622, 923
AluBI	AGCT	7 cut(s)	60, 157, 181, 599, 950, 986, 1095
AluI	AGCT	7 cut(s)	60, 157, 181, 599, 950, 986, 1095
Alw21I	GWGCWC	1 cut(s)	776
Alw26I	GTCTC	2 cut(s)	87, 504
AlwI	GGATC	1 cut(s)	492
ApeKI	GCWGC	4 cut(s)	436, 634, 694, 1031
ApoI	RAATTY	6 cut(s)	38, 316, 617, 736, 824, 845
AsuHPI	GGTGA	4 cut(s)	485, 887, 960, 1031
BaeGI	GKGCMC	1 cut(s)	665
BauI	CACGAG	1 cut(s)	998
Bbv12I	GWGCWC	1 cut(s)	776
BbvI	GCAGC	4 cut(s)	423, 646, 681, 1018
BccI	CCATC	2 cut(s)	284, 831
BciVI	GTATCC	1 cut(s)	378
BclI	TGATCA	2 cut(s)	25, 409
BcoDI	GTCTC	2 cut(s)	87, 504
BfaI	CTAG	4 cut(s)	296, 321, 426, 519
BfmI	CTRYAG	1 cut(s)	1102
BfrI	CTTAAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	378
BisI	GCNGC	4 cut(s)	437, 635, 695, 1032
BlsI	GCNGC	4 cut(s)	438, 636, 696, 1033
BmiI	GGNNCC	1 cut(s)	654
BmsI	GCATC	3 cut(s)	558, 979, 1018
BsaBI	GATNNNNATC	1 cut(s)	993
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	970
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	829
Bse8I	GATNNNNATC	1 cut(s)	993
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	573, 842
BseJI	GATNNNNATC	1 cut(s)	993
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMII	CTCAG	4 cut(s)	70, 369, 543, 621
BseNI	ACTGG	1 cut(s)	829
BseSI	GKGCMC	1 cut(s)	665
BseXI	GCAGC	4 cut(s)	423, 646, 681, 1018
BsiHKAI	GWGCWC	1 cut(s)	776
BsiSI	CCGG	2 cut(s)	422, 971
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	2 cut(s)	87, 504
Bsp1286I	GDGCHC	2 cut(s)	665, 776
Bsp1407I	TGTACA	1 cut(s)	601
Bsp143I	GATC	4 cut(s)	25, 409, 484, 533
BspACI	CCGC	1 cut(s)	494
BspCNI	CTCAG	4 cut(s)	69, 368, 544, 622
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	1 cut(s)	654
BspPI	GGATC	1 cut(s)	492
BspQI	GCTCTTC	1 cut(s)	147
BspTI	CTTAAG	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	421
BsrGI	TGTACA	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	829
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	4 cut(s)	25, 409, 484, 533
BssSI	CACGAG	1 cut(s)	998
BssT1I	CCWWGG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	998
Bst4CI	ACNGT	3 cut(s)	610, 793, 1071
Bst6I	CTCTTC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	601
BstDEI	CTNAG	5 cut(s)	56, 104, 355, 552, 630
BstF5I	GGATG	2 cut(s)	573, 842
BstKTI	GATC	4 cut(s)	28, 412, 487, 536
BstMAI	GTCTC	2 cut(s)	87, 504
BstMBI	GATC	4 cut(s)	25, 409, 484, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	694, 947
BstNSI	RCATGY	2 cut(s)	719, 1126
BstSFI	CTRYAG	1 cut(s)	1102
BstSLI	GKGCMC	1 cut(s)	665
BstV1I	GCAGC	4 cut(s)	423, 646, 681, 1018
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	573, 842
BtsIMutI	CAGTG	1 cut(s)	627
CciI	TCATGA	1 cut(s)	1036
Cfr10I	RCCGGY	1 cut(s)	421
Csp6I	GTAC	4 cut(s)	170, 192, 602, 625
CviAII	CATG	8 cut(s)	186, 712, 716, 872, 892, 1004, 1037, 1123
CviQI	GTAC	4 cut(s)	170, 192, 602, 625
DdeI	CTNAG	5 cut(s)	56, 104, 355, 552, 630
DpnI	GATC	4 cut(s)	27, 411, 486, 535
DpnII	GATC	4 cut(s)	25, 409, 484, 533
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	113
EcoRI	GAATTC	3 cut(s)	316, 617, 736
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	2 cut(s)	717, 1132
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	8 cut(s)	189, 715, 719, 875, 895, 1007, 1040, 1126
FatI	CATG	8 cut(s)	185, 711, 715, 871, 891, 1003, 1036, 1122
FauNDI	CATATG	1 cut(s)	684
FbaI	TGATCA	2 cut(s)	25, 409
Fnu4HI	GCNGC	4 cut(s)	437, 635, 695, 1032
FokI	GGATG	2 cut(s)	580, 849
Fsp4HI	GCNGC	4 cut(s)	437, 635, 695, 1032
FspBI	CTAG	4 cut(s)	296, 321, 426, 519
GluI	GCNGC	4 cut(s)	437, 635, 695, 1032
HapII	CCGG	2 cut(s)	422, 971
Hin1II	CATG	8 cut(s)	189, 715, 719, 875, 895, 1007, 1040, 1126
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	2 cut(s)	179, 1093
HinfI	GANTC	1 cut(s)	324
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	2 cut(s)	422, 971
HphI	GGTGA	4 cut(s)	485, 887, 960, 1031
Hpy166II	GTNNAC	2 cut(s)	334, 627
Hpy188I	TCNGA	4 cut(s)	79, 358, 766, 938
Hpy188III	TCNNGA	4 cut(s)	321, 834, 998, 1037
Hpy8I	GTNNAC	2 cut(s)	334, 627
HpyAV	CCTTC	7 cut(s)	305, 382, 585, 648, 761, 764, 973
HpyCH4III	ACNGT	3 cut(s)	610, 793, 1071
HpyCH4V	TGCA	7 cut(s)	264, 571, 715, 853, 960, 992, 1130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	694, 947
HpyF3I	CTNAG	5 cut(s)	56, 104, 355, 552, 630
Hsp92II	CATG	8 cut(s)	189, 715, 719, 875, 895, 1007, 1040, 1126
Ksp22I	TGATCA	2 cut(s)	25, 409
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	25, 409, 484, 533
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	2 cut(s)	596, 771
LpnPI	CCDG	6 cut(s)	435, 504, 726, 819, 842, 984
Lsp1109I	GCAGC	4 cut(s)	423, 646, 681, 1018
LweI	GCATC	3 cut(s)	558, 979, 1018
MaeI	CTAG	4 cut(s)	296, 321, 426, 519
MaeIII	GTNAC	4 cut(s)	211, 473, 701, 884
MalI	GATC	4 cut(s)	27, 411, 486, 535
MboI	GATC	4 cut(s)	25, 409, 484, 533
MboII	GAAGA	4 cut(s)	139, 164, 404, 479
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	2 cut(s)	665, 776
MmeI	TCCRAC	1 cut(s)	775
MnlI	CCTC	9 cut(s)	63, 441, 450, 499, 547, 558, 581, 676, 899
Mph1103I	ATGCAT	2 cut(s)	717, 1132
MseI	TTAA	5 cut(s)	177, 333, 612, 896, 927
MslI	CAYNNNNRTG	5 cut(s)	225, 716, 876, 1002, 1008
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	2 cut(s)	422, 971
MwoI	GCNNNNNNNGC	2 cut(s)	694, 947
NdeI	CATATG	1 cut(s)	684
NdeII	GATC	4 cut(s)	25, 409, 484, 533
NlaIII	CATG	8 cut(s)	189, 715, 719, 875, 895, 1007, 1040, 1126
NlaIV	GGNNCC	1 cut(s)	654
NmuCI	GTSAC	4 cut(s)	211, 473, 701, 884
NsiI	ATGCAT	2 cut(s)	717, 1132
NspI	RCATGY	2 cut(s)	719, 1126
PagI	TCATGA	1 cut(s)	1036
PciI	ACATGT	1 cut(s)	1122
PciSI	GCTCTTC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	4 cut(s)	438, 636, 696, 1033
PscI	ACATGT	1 cut(s)	1122
PspN4I	GGNNCC	1 cut(s)	654
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	4 cut(s)	171, 193, 603, 626
RsaNI	GTAC	4 cut(s)	170, 192, 602, 625
RseI	CAYNNNNRTG	5 cut(s)	225, 716, 876, 1002, 1008
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	5 cut(s)	177, 333, 612, 896, 927
SatI	GCNGC	4 cut(s)	437, 635, 695, 1032
Sau3AI	GATC	4 cut(s)	25, 409, 484, 533
SduI	GDGCHC	2 cut(s)	665, 776
SfaNI	GCATC	3 cut(s)	558, 979, 1018
SfcI	CTRYAG	1 cut(s)	1102
SmiMI	CAYNNNNRTG	5 cut(s)	225, 716, 876, 1002, 1008
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	1 cut(s)	494
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	4 cut(s)	296, 321, 426, 519
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	3 cut(s)	610, 793, 1071
TaqI	TCGA	4 cut(s)	240, 279, 578, 675
TatI	WGTACW	2 cut(s)	601, 624
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	5 cut(s)	177, 333, 612, 896, 927
Tru9I	TTAA	5 cut(s)	177, 333, 612, 896, 927
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	4 cut(s)	211, 473, 701, 884
TseI	GCWGC	4 cut(s)	436, 634, 694, 1031
Tsp45I	GTSAC	4 cut(s)	211, 473, 701, 884
TspDTI	ATGAA	8 cut(s)	53, 150, 324, 815, 822, 924, 996, 1038
TspRI	CASTG	1 cut(s)	634
Vha464I	CTTAAG	1 cut(s)	176
XapI	RAATTY	6 cut(s)	38, 316, 617, 736, 824, 845
XbaI	TCTAGA	1 cut(s)	320
XceI	RCATGY	2 cut(s)	719, 1126
XspI	CTAG	4 cut(s)	296, 321, 426, 519
Zsp2I	ATGCAT	2 cut(s)	717, 1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.