RchiOBHm_Chr2g0103601

Respiratory burst oxidase homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003315
Physical Location & Seq
Forward (+)
15067343 .. 15068022
680 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGCTCATTTCTATTGGGTTACCTGGCTCTTTTGAGTGGTTTAAAGGAGTCATGGATGAAGTGGCAGAAATGGATATCAAAGGTCAGATTGAACTTCACAACTACCTTACGAGTGTCTACGAAGAGGGTGATGCAAGGTCAACTCTAATCACCATGGTCCAAGCTCTCAACCATGCCAAACTTGGAGTTGACATCCTATCTGGCACCAGAGTAATGACTCATTTTGCAAGACCTAATTGGAAAGAAGTGTTTACCAAGATAGCTTCCAAGCATCCATTTTCGACAGTGGGGATATTCTACTGTGGGATGCCAATGTTAGCAAAGGAGCTGAAGATGCTATCACTTGAGCTCAGTCACAAGACATCGACACGCTTTGAATTCCACAAGGAGTACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

132

Amino Acids

15.08

Weight (kDa)

6.58

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_6 PF08030 8 - 113 2.6e-31 Ferric reductase NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 350
AfaI GTAC 1 cut(s) 392
AgsI TTSAA 2 cut(s) 92, 377
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 4 cut(s) 164, 263, 328, 349
AluI AGCT 4 cut(s) 164, 263, 328, 349
Alw21I GWGCWC 1 cut(s) 351
ApoI RAATTY 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 140, 142
AvaII GGWCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 24
BmcAI AGTACT 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 4 cut(s) 121, 280, 297, 324
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 4 cut(s) 61, 192, 271, 312
BseMII CTCAG 1 cut(s) 364
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 351
Bsp19I CCATGG 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 286, 302
Bst6I CTCTTC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 350
BstDSI CCRYGG 1 cut(s) 153
BstEII GGTNACC 1 cut(s) 18
BstF5I GGATG 4 cut(s) 61, 192, 271, 312
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 24
BstPI GGTNACC 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 4 cut(s) 61, 192, 271, 312
BtsIMutI CAGTG 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 391
CviAII CATG 3 cut(s) 52, 154, 173
CviJI RGCY 5 cut(s) 27, 164, 263, 328, 349
CviKI_1 RGCY 5 cut(s) 27, 164, 263, 328, 349
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 350
DraI TTTAAA 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 350
Eco91I GGTNACC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 349
EcoO65I GGTNACC 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 22
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 55, 157, 176
FaiI YATR 3 cut(s) 53, 155, 174
FalI AAGNNNNNCTT 1 cut(s) 377
FatI CATG 3 cut(s) 51, 153, 172
FblI GTMKAC 1 cut(s) 117
FokI GGATG 4 cut(s) 68, 179, 258, 319
FriOI GRGCYC 1 cut(s) 351
Hin1II CATG 3 cut(s) 55, 157, 176
HincII GTYRAC 2 cut(s) 141, 190
HindII GTYRAC 2 cut(s) 141, 190
HinfI GANTC 2 cut(s) 48, 217
HphI GGTGA 2 cut(s) 140, 142
Hpy166II GTNNAC 4 cut(s) 118, 141, 190, 252
Hpy188I TCNGA 1 cut(s) 87
Hpy8I GTNNAC 4 cut(s) 118, 141, 190, 252
HpyCH4III ACNGT 2 cut(s) 286, 302
HpyCH4V TGCA 2 cut(s) 134, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 1 cut(s) 350
Hsp92II CATG 3 cut(s) 55, 157, 176
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 4 cut(s) 9, 36, 186, 220
LweI GCATC 4 cut(s) 121, 280, 297, 324
MaeIII GTNAC 2 cut(s) 18, 353
MboII GAAGA 2 cut(s) 134, 343
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 2 cut(s) 235, 377
MlyI GAGTC 2 cut(s) 57, 211
MnlI CCTC 1 cut(s) 118
MseI TTAA 2 cut(s) 42, 397
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 334
NcoI CCATGG 1 cut(s) 153
NlaIII CATG 3 cut(s) 55, 157, 176
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 353
PleI GAGTC 2 cut(s) 56, 211
PpsI GAGTC 2 cut(s) 56, 211
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 22
PspEI GGTNACC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 157
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 2 cut(s) 42, 397
Sau96I GGNCC 1 cut(s) 157
ScaI AGTACT 1 cut(s) 392
SchI GAGTC 2 cut(s) 57, 211
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 351
SetI ASST 9 cut(s) 25, 85, 108, 140, 166, 235, 265, 330, 351
SfaNI GCATC 4 cut(s) 121, 280, 297, 324
SinI GGWCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 2 cut(s) 235, 377
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 286, 302
TaqI TCGA 2 cut(s) 281, 365
TasI AATT 2 cut(s) 235, 377
TatI WGTACW 1 cut(s) 390
Tru1I TTAA 2 cut(s) 42, 397
Tru9I TTAA 2 cut(s) 42, 397
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 72
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.