Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008901

Physical Location & Seq

Genomic Coordinates Reverse (-)

63076580 .. 63077218

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCCTTCCCAGGTGTATATAGAGAAAGATTTGGATGAGGTGTTGCAGTCAAAGACGGTGTACTTGAATGTTTCCAAAGGTGTTCTTGCCAAGACCAAGGATTTGGTAGCTGCGTTTGGGTCGGATGATCAGACCAAGATTTGTTTAGAGATCTTGGATAAAGGGGAGCTTCAGGTTGCTGGGAAGGAGAGAGAGTCTCAGTTGTCCAGTCAATTTCGGGATATCGCCACTATTGTTACGCAGAAAACCTATAATCCAGAGAAGGCATCAAGCAGATCGGTGTTATCGGTTGGGGTTCACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

SBDS SBDS_C

Protein Analysis

101

Amino Acids

11.17

Weight (kDa)

6.57

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBDS_N	PF01172	8 - 64	9.5e-16	Shwachman-Bodian-Diamond syndrome (SBDS) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008901)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135391 RchiOBHm_Chr2g0144061 RchiOBHm_Chr2g0145391 RchiOBHm_Chr5g0001751
rosa_multiflora	Rmu_sc0001298.1_g000056 Rmu_sc0002083.1_g000023 Rmu_sc0003177.1_g000031 Rmu_sc0007367.1_g000004 Rmu_sc0015288.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244700 Rroxscaffold_4G00288140 Rroxscaffold_5G00347610
rosa_samantha	Rh1AG243000 Rh1CG226700 Rh1DG008100 Rh2AG337200 Rh5AG014000 Rh5AG127400 Rh5AG127800 Rh5BG548400 Rh5CG015100 Rh5CG571600 Rh7CG194400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	2 cut(s)	110, 169
AluI	AGCT	2 cut(s)	110, 169
Alw26I	GTCTC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	110
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
BbvI	GCAGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	11
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	201
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BsaJI	CCNNGG	2 cut(s)	9, 96
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bse1I	ACTGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	9, 96
BseGI	GGATG	2 cut(s)	40, 130
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	127, 150, 275
BspCNI	CTCAG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	9, 96
BssMI	GATC	3 cut(s)	127, 150, 275
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	40, 130
BstKTI	GATC	3 cut(s)	130, 153, 278
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	127, 150, 275
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	40, 130
Csp6I	GTAC	1 cut(s)	61
CviJI	RGCY	2 cut(s)	110, 169
CviKI_1	RGCY	2 cut(s)	110, 169
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	3 cut(s)	129, 152, 277
DpnII	GATC	3 cut(s)	127, 150, 275
Eco130I	CCWWGG	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaiI	YATR	3 cut(s)	18, 20, 252
FalI	AAGNNNNNCTT	4 cut(s)	69, 101, 153, 185
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	2 cut(s)	47, 137
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	61, 298
Hpy188I	TCNGA	2 cut(s)	124, 132
Hpy188III	TCNNGA	2 cut(s)	218, 257
Hpy8I	GTNNAC	2 cut(s)	61, 298
HpyAV	CCTTC	3 cut(s)	15, 178, 256
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	127, 150, 275
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	6 cut(s)	23, 158, 165, 220, 270, 286
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	129, 152, 277
MboI	GATC	3 cut(s)	127, 150, 275
MflI	RGATCY	1 cut(s)	150
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	127, 150, 275
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	3 cut(s)	127, 150, 275
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	8 cut(s)	15, 42, 82, 112, 171, 177, 251, 305
SfaNI	GCATC	1 cut(s)	275
Sse9I	AATT	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	60
TseI	GCWGC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.