Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008901

Physical Location & Seq

Genomic Coordinates Reverse (-)

933730 .. 936197

Gene Structure 2468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCCTTTCCGGTTCAGAATTTTCTCCAAACAGTGCCATGTGGATTTCGTCATCACCATTTCTATCAACCTGGATGAGCAGCTGATGGATTCGTCAGGGATGGCTCCACCTTCATCCTCTAAAGCCCACGTGGCGGCTCCCTCCACTCTCGCCTTCTCCTCCGCCGTCTCCAAGTCCCTCAACCCTCTCAGGCTCAGAGCCGCCTCTCGCGGTGCTGCTATTGGCCGCGGATCCGCTCTCAGAGCTCGTATGGTCTCAATGCCGACGATTAAGCCCCCGCTCTCTCTTGATTTCGACACCTCTGTTTTCAACAAGGAGAAGATCAACCTCGCTGGTCACGATGAGTATATTGTAAAGGGAGAAAGGTACTTGTTCCATCTGCCGCCTGATGCCTTCAAGGGCATCAAGCAGATCGGTGTTATCGGTTGGGGTTCACAGAGGTCTGCGTTTGTCATTAGAGTATCTGTCAATTGCGTTTTACTTGATTTGGCCAAGTACGTCTTCCCCAAGCAGTTCAAGGCTCGGACTCTCGAGGAAGCTCTCATGTCAGGACCAGCCCAGAACTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

IlvC IlvN

Protein Analysis

190

Amino Acids

20.86

Weight (kDa)

9.86

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008901)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135391 RchiOBHm_Chr2g0144061 RchiOBHm_Chr2g0145391 RchiOBHm_Chr5g0001751
rosa_multiflora	Rmu_sc0001298.1_g000056 Rmu_sc0002083.1_g000023 Rmu_sc0003177.1_g000031 Rmu_sc0007367.1_g000004 Rmu_sc0015288.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244700 Rroxscaffold_4G00288140 Rroxscaffold_5G00347610
rosa_samantha	Rh1AG243000 Rh1CG226700 Rh1DG008100 Rh2AG337200 Rh5AG014000 Rh5AG127400 Rh5AG127800 Rh5BG548400 Rh5CG015100 Rh5CG571600 Rh7CG194400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	236, 280
AccII	CGCG	2 cut(s)	210, 228
AciI	CCGC	9 cut(s)	134, 162, 201, 210, 226, 228, 234, 278, 383
AclWI	GGATC	2 cut(s)	225, 238
AcoI	YGGCCR	2 cut(s)	223, 489
AcsI	RAATTY	1 cut(s)	18
AcvI	CACGTG	1 cut(s)	130
AfaI	GTAC	2 cut(s)	368, 497
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	310, 397, 517
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	3 cut(s)	82, 245, 539
AluI	AGCT	3 cut(s)	82, 245, 539
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	2 cut(s)	172, 259
AlwI	GGATC	2 cut(s)	225, 238
Ama87I	CYCGRG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	223, 489
ApeKI	GCWGC	2 cut(s)	79, 215
ApoI	RAATTY	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	247
BbrPI	CACGTG	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	91, 202
BccI	CCATC	3 cut(s)	79, 94, 384
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	172, 259
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	6 cut(s)	80, 135, 201, 216, 226, 383
BlsI	GCNGC	6 cut(s)	81, 136, 202, 217, 227, 384
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	3 cut(s)	105, 138, 232
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	2 cut(s)	379, 411
BpiI	GAAGAC	1 cut(s)	493
BsaAI	YACGTR	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	3 cut(s)	79, 105, 113
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	3 cut(s)	202, 208, 253
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	91, 202
Bsh1236I	CGCG	2 cut(s)	210, 228
BshFI	GGCC	2 cut(s)	225, 491
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	2 cut(s)	172, 259
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	225, 491
Bso31I	GGTCTC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	3 cut(s)	230, 321, 411
BspACI	CCGC	9 cut(s)	134, 162, 201, 210, 226, 228, 234, 278, 383
BspANI	GGCC	2 cut(s)	225, 491
BspCNI	CTCAG	3 cut(s)	201, 207, 252
BspFNI	CGCG	2 cut(s)	210, 228
BspLI	GGNNCC	3 cut(s)	105, 138, 232
BspPI	GGATC	2 cut(s)	225, 238
BspTNI	GGTCTC	1 cut(s)	259
BsrBI	CCGCTC	2 cut(s)	236, 280
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	3 cut(s)	230, 321, 411
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	188, 194, 239
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	3 cut(s)	79, 105, 113
BstFNI	CGCG	2 cut(s)	210, 228
BstKTI	GATC	3 cut(s)	233, 324, 414
BstMAI	GTCTC	2 cut(s)	172, 259
BstMBI	GATC	3 cut(s)	230, 321, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 242
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	2 cut(s)	210, 228
BstV1I	GCAGC	2 cut(s)	91, 202
BstV2I	GAAGAC	1 cut(s)	493
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	225, 491
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	79, 105, 113
BtsIMutI	CAGTG	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	551
Cfr42I	CCGCGG	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	367, 496
CviAII	CATG	2 cut(s)	38, 544
CviQI	GTAC	2 cut(s)	367, 496
DdeI	CTNAG	3 cut(s)	188, 194, 239
DpnI	GATC	3 cut(s)	232, 323, 413
DpnII	GATC	3 cut(s)	230, 321, 411
EaeI	YGGCCR	2 cut(s)	223, 489
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	551
Eco53kI	GAGCTC	1 cut(s)	245
Eco72I	CACGTG	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	530
EcoICRI	GAGCTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	2 cut(s)	41, 547
FaiI	YATR	4 cut(s)	39, 251, 348, 545
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	37, 543
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	80, 135, 201, 216, 226, 383
FokI	GGATG	3 cut(s)	86, 100, 112
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	6 cut(s)	80, 135, 201, 216, 226, 383
GluI	GCNGC	6 cut(s)	80, 135, 201, 216, 226, 383
HaeIII	GGCC	2 cut(s)	225, 491
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	2 cut(s)	41, 547
HinfI	GANTC	2 cut(s)	89, 526
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	4 cut(s)	17, 197, 242, 525
Hpy188III	TCNNGA	4 cut(s)	287, 338, 530, 549
Hpy8I	GTNNAC	1 cut(s)	434
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	120, 163, 403
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	2 cut(s)	129, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 242
HpyF3I	CTNAG	3 cut(s)	188, 194, 239
HpySE526I	ACGT	2 cut(s)	129, 498
Hsp92II	CATG	2 cut(s)	41, 547
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	230, 321, 411
LmnI	GCTCC	2 cut(s)	109, 142
LpnPI	CCDG	9 cut(s)	23, 56, 81, 83, 175, 318, 399, 534, 567
Lsp1109I	GCAGC	2 cut(s)	91, 202
LweI	GCATC	2 cut(s)	379, 411
MaeII	ACGT	2 cut(s)	129, 498
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	232, 323, 413
MbiI	CCGCTC	2 cut(s)	236, 280
MboI	GATC	3 cut(s)	230, 321, 411
MboII	GAAGA	2 cut(s)	331, 493
MfeI	CAATTG	1 cut(s)	469
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	2 cut(s)	18, 469
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	520
Mox20I	TGGCCA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	2 cut(s)	82, 228
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	210, 228
MwoI	GCNNNNNNNGC	2 cut(s)	131, 242
NdeII	GATC	3 cut(s)	230, 321, 411
NlaIII	CATG	2 cut(s)	41, 547
NlaIV	GGNNCC	3 cut(s)	105, 138, 232
NmuCI	GTSAC	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	6 cut(s)	81, 136, 202, 217, 227, 384
PleI	GAGTC	1 cut(s)	520
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	520
Ppu21I	YACGTR	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	69
PspCI	CACGTG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	105, 138, 232
PspPI	GGNCC	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	2 cut(s)	368, 497
RsaNI	GTAC	2 cut(s)	367, 496
SacI	GAGCTC	1 cut(s)	247
SacII	CCGCGG	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	6 cut(s)	80, 135, 201, 216, 226, 383
Sau3AI	GATC	3 cut(s)	230, 321, 411
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	379, 411
Sfr274I	CTCGAG	1 cut(s)	530
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	2 cut(s)	18, 469
SsiI	CCGC	9 cut(s)	134, 162, 201, 210, 226, 228, 234, 278, 383
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	2 cut(s)	132, 501
TaqI	TCGA	2 cut(s)	294, 531
TasI	AATT	2 cut(s)	18, 469
TauI	GCSGC	4 cut(s)	137, 203, 228, 385
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	79, 215
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	1 cut(s)	18
XhoI	CTCGAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.