Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008901

Physical Location & Seq

Genomic Coordinates Forward (+)

61648922 .. 61650233

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCTCCACCTTCATCCTCCAAAGCCCACGCGGCGACTCCCTCCACTCTCGCCTTCTCCTCCGCCGTATCCAAGTCCCTCAACCCTCTCAGGCTCAGAGCCGCCTCTCGCGGTGCTGCTATTGGCCGCGGATCCGCTCTCAGAGCTCCTATGGTCTCAATGCCAACGATTAAGCCCCCGCTCTCTCTTGATTTCGACACCTCTGTTTTCAACAAGGAGAAGATCAACCTCGCTGGTCACGATGAGAGTATTCATAGTGATTTGAGATATGAAAGGTACTTGTTCCATCTGCAGCCTGATGCCTTCAACTCTTCAAGGGCATCAAGCAGATCGGTGTTATCGGTTGGGGGACCTGCTCAAGCTCAGAACTTAAGAGATTCTCTAGCTGAAGCAAAGTCGAATATTGTGGTCAAGATTGGGCTCAGGAAGGGATCACGTTCATTTAATGAAGCTCGCGCAGCTGGTTTCACCGAGGAGAATGGGACTTTAGGTGACATATGGGAAACAATCTCAGAGAGTGATCTTGTGTTGCTACTAATTTCTGATCCCGCACAGGTATGTTGGTTCTGCATTGGAAAGTCGTACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

IlvC IlvN

Protein Analysis

196

Amino Acids

21.03

Weight (kDa)

9.23

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008901)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135391 RchiOBHm_Chr2g0144061 RchiOBHm_Chr2g0145391 RchiOBHm_Chr5g0001751
rosa_multiflora	Rmu_sc0001298.1_g000056 Rmu_sc0002083.1_g000023 Rmu_sc0003177.1_g000031 Rmu_sc0007367.1_g000004 Rmu_sc0015288.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244700 Rroxscaffold_4G00288140 Rroxscaffold_5G00347610
rosa_samantha	Rh1AG243000 Rh1CG226700 Rh1DG008100 Rh2AG337200 Rh5AG014000 Rh5AG127400 Rh5AG127800 Rh5BG548400 Rh5CG015100 Rh5CG571600 Rh7CG194400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	361
AccBSI	CCGCTC	2 cut(s)	137, 181
AccII	CGCG	4 cut(s)	32, 111, 129, 456
AciI	CCGC	9 cut(s)	32, 63, 102, 111, 127, 129, 135, 179, 549
AclWI	GGATC	4 cut(s)	126, 139, 439, 539
AcoI	YGGCCR	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	2 cut(s)	278, 584
AflII	CTTAAG	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	211, 307, 315
AluBI	AGCT	5 cut(s)	146, 362, 386, 452, 461
AluI	AGCT	5 cut(s)	146, 362, 386, 452, 461
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	4 cut(s)	126, 139, 439, 539
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	116, 292, 458
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	460, 503
AvaII	GGWCC	1 cut(s)	350
BamHI	GGATCC	1 cut(s)	131
BanII	GRGCYC	2 cut(s)	148, 423
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	103, 304, 470
BccI	CCATC	1 cut(s)	294
BceAI	ACGGC	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	361
BfuI	GTATCC	1 cut(s)	79
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	6 cut(s)	33, 102, 117, 127, 293, 459
BlsI	GCNGC	6 cut(s)	34, 103, 118, 128, 294, 460
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	3 cut(s)	6, 133, 351
BmsI	GCATC	2 cut(s)	289, 329
Bpu10I	CCTNAGC	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	127, 471
BseDI	CCNNGG	2 cut(s)	127, 471
BseGI	GGATG	1 cut(s)	14
BseMII	CTCAG	6 cut(s)	103, 109, 154, 377, 436, 525
BseRI	GAGGAG	2 cut(s)	49, 488
BseXI	GCAGC	3 cut(s)	103, 304, 470
Bsh1236I	CGCG	4 cut(s)	32, 111, 129, 456
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	148
BslFI	GGGAC	3 cut(s)	61, 363, 496
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	3 cut(s)	61, 363, 496
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	148, 423
Bsp143I	GATC	6 cut(s)	131, 222, 329, 431, 520, 544
BspACI	CCGC	9 cut(s)	32, 63, 102, 111, 127, 129, 135, 179, 549
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	6 cut(s)	102, 108, 153, 376, 435, 524
BspFNI	CGCG	4 cut(s)	32, 111, 129, 456
BspLI	GGNNCC	3 cut(s)	6, 133, 351
BspMAI	CTGCAG	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	4 cut(s)	126, 139, 439, 539
BspTI	CTTAAG	1 cut(s)	370
BspTNI	GGTCTC	1 cut(s)	160
BsrBI	CCGCTC	2 cut(s)	137, 181
BssECI	CCNNGG	2 cut(s)	127, 471
BssMI	GATC	6 cut(s)	131, 222, 329, 431, 520, 544
Bst6I	CTCTTC	1 cut(s)	316
BstAFI	CTTAAG	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	6 cut(s)	89, 95, 140, 363, 422, 511
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	4 cut(s)	32, 111, 129, 456
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	6 cut(s)	134, 225, 332, 434, 523, 547
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	6 cut(s)	131, 222, 329, 431, 520, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 143, 458
BstSFI	CTRYAG	1 cut(s)	290
BstUI	CGCG	4 cut(s)	32, 111, 129, 456
BstV1I	GCAGC	3 cut(s)	103, 304, 470
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	14
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	454
CfoI	GCGC	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	350
Cfr42I	CCGCGG	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	277, 583
CviQI	GTAC	2 cut(s)	277, 583
DdeI	CTNAG	6 cut(s)	89, 95, 140, 363, 422, 511
DpnI	GATC	6 cut(s)	133, 224, 331, 433, 522, 546
DpnII	GATC	6 cut(s)	131, 222, 329, 431, 520, 544
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	2 cut(s)	148, 423
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	350
EcoT38I	GRGCYC	2 cut(s)	148, 423
FaiI	YATR	6 cut(s)	152, 255, 270, 497, 499, 559
FaqI	GGGAC	3 cut(s)	61, 363, 496
FauI	CCCGC	2 cut(s)	186, 556
FauNDI	CATATG	1 cut(s)	497
Fnu4HI	GCNGC	6 cut(s)	33, 102, 117, 127, 293, 459
FriOI	GRGCYC	2 cut(s)	148, 423
Fsp4HI	GCNGC	6 cut(s)	33, 102, 117, 127, 293, 459
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	6 cut(s)	33, 102, 117, 127, 293, 459
HaeIII	GGCC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HinfI	GANTC	2 cut(s)	37, 377
HphI	GGTGA	2 cut(s)	460, 503
Hpy188I	TCNGA	5 cut(s)	98, 143, 366, 514, 544
Hpy188III	TCNNGA	4 cut(s)	188, 239, 412, 424
HpyAV	CCTTC	4 cut(s)	21, 64, 313, 421
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	2 cut(s)	292, 570
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 143, 458
HpyF3I	CTNAG	6 cut(s)	89, 95, 140, 363, 422, 511
HpySE526I	ACGT	1 cut(s)	436
HspAI	GCGC	1 cut(s)	456
KspI	CCGCGG	1 cut(s)	130
Kzo9I	GATC	6 cut(s)	131, 222, 329, 431, 520, 544
LmnI	GCTCC	2 cut(s)	10, 151
LpnPI	CCDG	7 cut(s)	76, 219, 309, 366, 409, 447, 539
Lsp1109I	GCAGC	3 cut(s)	103, 304, 470
LweI	GCATC	2 cut(s)	289, 329
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	236, 491
MalI	GATC	6 cut(s)	133, 224, 331, 433, 522, 546
MbiI	CCGCTC	2 cut(s)	137, 181
MboI	GATC	6 cut(s)	131, 222, 329, 431, 520, 544
MboII	GAAGA	2 cut(s)	232, 303
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	2 cut(s)	148, 423
MluCI	AATT	1 cut(s)	537
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	9 cut(s)	28, 52, 70, 89, 96, 115, 211, 239, 466
MseI	TTAA	3 cut(s)	171, 371, 444
MslI	CAYNNNNRTG	1 cut(s)	556
MspA1I	CMGCKG	2 cut(s)	129, 461
MspCI	CTTAAG	1 cut(s)	370
MvnI	CGCG	4 cut(s)	32, 111, 129, 456
MwoI	GCNNNNNNNGC	3 cut(s)	32, 143, 458
NdeI	CATATG	1 cut(s)	497
NdeII	GATC	6 cut(s)	131, 222, 329, 431, 520, 544
NlaIV	GGNNCC	3 cut(s)	6, 133, 351
NmuCI	GTSAC	2 cut(s)	236, 491
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	6 cut(s)	34, 103, 118, 128, 294, 460
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	350
PspN4I	GGNNCC	3 cut(s)	6, 133, 351
PspPI	GGNCC	1 cut(s)	350
PspPPI	RGGWCCY	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	2 cut(s)	278, 584
RsaNI	GTAC	2 cut(s)	277, 583
RseI	CAYNNNNRTG	1 cut(s)	556
SacI	GAGCTC	1 cut(s)	148
SacII	CCGCGG	1 cut(s)	130
SaqAI	TTAA	3 cut(s)	171, 371, 444
SatI	GCNGC	6 cut(s)	33, 102, 117, 127, 293, 459
Sau3AI	GATC	6 cut(s)	131, 222, 329, 431, 520, 544
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	148, 423
SfaNI	GCATC	2 cut(s)	289, 329
SfcI	CTRYAG	1 cut(s)	290
Sfr303I	CCGCGG	1 cut(s)	130
SgrBI	CCGCGG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	556
SmlI	CTYRAG	2 cut(s)	357, 370
SmoI	CTYRAG	2 cut(s)	357, 370
Sse9I	AATT	1 cut(s)	537
SsiI	CCGC	9 cut(s)	32, 63, 102, 111, 127, 129, 135, 179, 549
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	383
SstI	GAGCTC	1 cut(s)	148
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	195, 398
TasI	AATT	1 cut(s)	537
TauI	GCSGC	3 cut(s)	35, 104, 129
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	3 cut(s)	171, 371, 444
Tru9I	TTAA	3 cut(s)	171, 371, 444
TseFI	GTSAC	2 cut(s)	236, 491
TseI	GCWGC	3 cut(s)	116, 292, 458
Tsp45I	GTSAC	2 cut(s)	236, 491
TspDTI	ATGAA	4 cut(s)	242, 285, 429, 462
Vha464I	CTTAAG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	350
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.