Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008901

Physical Location & Seq

Genomic Coordinates Forward (+)

45534036 .. 45535360

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG243000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCTTTCCGGTTCAGAATTTTCTCCAAACAGTGCCATGTGGATTTCGTCATCACCATTTCTATCAACCTGGATGAGCAGCTGATGGGTTCGTCAGGGATGGCTCCACCTTCATCCTCTAAAGCCCACGCGGCGGCTCCCTCCACTCTCGCCTTCTCCTCCGCCGTCTCCAAGTCCCTCAACCCTCTCAGGCTCAGAGCCGCCTCTCGCGGTGCTGCTATTGGCCGCGGATCCGCTCTCAGAGCTCGTATGGTCTCAATGCCGACGATTAAGCCCCCGCTTTCTCTTGATTTCGACACCTCTGTTTTCAACAAGGAGAAGATCAACCTCGCTGGTCACGATGAGAGTATTCATAGTGATTTGAGATATGGTATTTGGTTTTTGTTGATTTTGCAGTATATTGTAAAGGGAGAAAGAGAGAAAGATTTGGATGAGGTGTTGCAGTCAAAGACGGTGTACTTGAATGTTTCCAAAGGTGTTCTTGCCAAGACCAAGGATTTGGTAGCTGCGTTTGGGTCGGATGATCAGACCAAGATTTGTTTAGAGATCTTGGATAAAGGGGAGCTTCAGGTTGCTGGGAAGGAGAGAGAGTCTCAGTTGTCCAGTCAATTTCGGGATATCGCCACTATTGTTATGCAGAAAACCTATAATCCAGAGAAGGCATCAAGCAGATCGGTGTTATCGGTTGGGGTTCACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

SBDS SBDS_C

Protein Analysis

233

Amino Acids

25.6

Weight (kDa)

9.44

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBDS_N	PF01172	136 - 196	1.1e-15	Shwachman-Bodian-Diamond syndrome (SBDS) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008901)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135391 RchiOBHm_Chr2g0144061 RchiOBHm_Chr2g0145391 RchiOBHm_Chr5g0001751
rosa_multiflora	Rmu_sc0001298.1_g000056 Rmu_sc0002083.1_g000023 Rmu_sc0003177.1_g000031 Rmu_sc0007367.1_g000004 Rmu_sc0015288.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244700 Rroxscaffold_4G00288140 Rroxscaffold_5G00347610
rosa_samantha	Rh1AG243000 Rh1CG226700 Rh1DG008100 Rh2AG337200 Rh5AG014000 Rh5AG127400 Rh5AG127800 Rh5BG548400 Rh5CG015100 Rh5CG571600 Rh7CG194400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	236
AccII	CGCG	3 cut(s)	131, 210, 228
AciI	CCGC	9 cut(s)	131, 134, 162, 201, 210, 226, 228, 234, 278
AclWI	GGATC	2 cut(s)	225, 238
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	551
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	310, 463
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	4 cut(s)	82, 245, 506, 565
AluI	AGCT	4 cut(s)	82, 245, 506, 565
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	3 cut(s)	172, 259, 597
AlwI	GGATC	2 cut(s)	225, 238
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	3 cut(s)	79, 215, 506
ApoI	RAATTY	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	481, 513
AsuHPI	GGTGA	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	91, 202, 493
BccI	CCATC	2 cut(s)	79, 94
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	71
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	3 cut(s)	172, 259, 597
BglI	GCCNNNNNGGC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	546
BisI	GCNGC	7 cut(s)	80, 132, 135, 201, 216, 226, 507
BlsI	GCNGC	7 cut(s)	81, 133, 136, 202, 217, 227, 508
Bme1390I	CCNGG	1 cut(s)	71
BmiI	GGNNCC	3 cut(s)	105, 138, 232
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	671
BplI	GAGNNNNNCTC	2 cut(s)	577, 609
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	226, 492
BsaWI	WCCGGW	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	226, 492
BseGI	GGATG	5 cut(s)	79, 105, 113, 436, 526
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	4 cut(s)	202, 208, 253, 608
BseNI	ACTGG	1 cut(s)	603
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	91, 202, 493
BseYI	CCCAGC	1 cut(s)	575
Bsh1236I	CGCG	3 cut(s)	131, 210, 228
BshFI	GGCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	172, 259, 597
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	5 cut(s)	230, 321, 523, 546, 671
BspACI	CCGC	9 cut(s)	131, 134, 162, 201, 210, 226, 228, 234, 278
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	4 cut(s)	201, 207, 252, 607
BspFNI	CGCG	3 cut(s)	131, 210, 228
BspLI	GGNNCC	3 cut(s)	105, 138, 232
BspPI	GGATC	2 cut(s)	225, 238
BspTNI	GGTCTC	1 cut(s)	259
BsrBI	CCGCTC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	603
BssECI	CCNNGG	2 cut(s)	226, 492
BssMI	GATC	5 cut(s)	230, 321, 523, 546, 671
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	33, 454
BstDEI	CTNAG	4 cut(s)	188, 194, 239, 594
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	79, 105, 113, 436, 526
BstFNI	CGCG	3 cut(s)	131, 210, 228
BstKTI	GATC	5 cut(s)	233, 324, 526, 549, 674
BstMAI	GTCTC	3 cut(s)	172, 259, 597
BstMBI	GATC	5 cut(s)	230, 321, 523, 546, 671
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 242
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	3 cut(s)	131, 210, 228
BstV1I	GCAGC	3 cut(s)	91, 202, 493
BstX2I	RGATCY	2 cut(s)	230, 546
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	2 cut(s)	230, 546
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	5 cut(s)	79, 105, 113, 436, 526
BtsIMutI	CAGTG	1 cut(s)	38
Cfr42I	CCGCGG	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	4 cut(s)	188, 194, 239, 594
DpnI	GATC	5 cut(s)	232, 323, 525, 548, 673
DpnII	GATC	5 cut(s)	230, 321, 523, 546, 671
EaeI	YGGCCR	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	259
Eco32I	GATATC	1 cut(s)	619
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	1 cut(s)	41
FaiI	YATR	7 cut(s)	39, 251, 354, 369, 399, 635, 648
FalI	AAGNNNNNCTT	4 cut(s)	465, 497, 549, 581
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	37
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	7 cut(s)	80, 132, 135, 201, 216, 226, 507
FokI	GGATG	5 cut(s)	86, 100, 112, 443, 533
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	7 cut(s)	80, 132, 135, 201, 216, 226, 507
GluI	GCNGC	7 cut(s)	80, 132, 135, 201, 216, 226, 507
GsaI	CCCAGC	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	1 cut(s)	41
HinfI	GANTC	1 cut(s)	590
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	457, 694
Hpy188I	TCNGA	5 cut(s)	17, 197, 242, 520, 528
Hpy188III	TCNNGA	4 cut(s)	287, 338, 614, 653
Hpy8I	GTNNAC	2 cut(s)	457, 694
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	4 cut(s)	120, 163, 574, 652
HpyCH4III	ACNGT	2 cut(s)	33, 454
HpyCH4V	TGCA	3 cut(s)	394, 442, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 242
HpyF3I	CTNAG	4 cut(s)	188, 194, 239, 594
Hsp92II	CATG	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	523
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	230, 321, 523, 546, 671
LmnI	GCTCC	3 cut(s)	109, 142, 562
Lsp1109I	GCAGC	3 cut(s)	91, 202, 493
LweI	GCATC	1 cut(s)	671
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	5 cut(s)	232, 323, 525, 548, 673
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	5 cut(s)	230, 321, 523, 546, 671
MboII	GAAGA	1 cut(s)	331
MflI	RGATCY	2 cut(s)	230, 546
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	2 cut(s)	18, 608
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	9 cut(s)	127, 151, 169, 188, 195, 214, 310, 338, 427
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	2 cut(s)	82, 228
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	3 cut(s)	131, 210, 228
MwoI	GCNNNNNNNGC	2 cut(s)	131, 242
NdeII	GATC	5 cut(s)	230, 321, 523, 546, 671
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	3 cut(s)	105, 138, 232
NmuCI	GTSAC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PkrI	GCNGC	7 cut(s)	81, 133, 136, 202, 217, 227, 508
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	105, 138, 232
PsuI	RGATCY	2 cut(s)	230, 546
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	247
SacII	CCGCGG	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	7 cut(s)	80, 132, 135, 201, 216, 226, 507
Sau3AI	GATC	5 cut(s)	230, 321, 523, 546, 671
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	1 cut(s)	671
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
Sse9I	AATT	2 cut(s)	18, 608
SsiI	CCGC	9 cut(s)	131, 134, 162, 201, 210, 226, 228, 234, 278
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	33, 454
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	18, 608
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	4 cut(s)	134, 137, 203, 228
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	3 cut(s)	79, 215, 506
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	102, 341
TspRI	CASTG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.