Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008901

Physical Location & Seq

Genomic Coordinates Forward (+)

19155214 .. 19166397

Gene Structure 11184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCTCCACCTTCATCCTTTAAAGCCCACACGGCGGCTCCCTCCACTCTCGCCTTCTCCTCCGCCGTCTCCAAGTCCCTCGACCCTCTCGGGCTCATAGCCGCCTCTCGCGATGCTGCTATTGGCCTCGGATCCGCTCTCGAGCTCGGACCTGCTCAAGCTCAGAACTTGAGAGATTCTCTAGCTGAAGCAAAGTCGAATATTGTGGTCAAGGAGTTTGACATCAGTCTTTTGTTCATGGAATTGCTATTACATGTTTTGATATGTCAAAATGAGGCTGCAAAATGCTTAATTGAGACATCTATTAGTTCCCTTCGTATAAGCCTCAAGAATGATTTAGTATGCCTCGTCAAGGACTATGTCATTATTTTGATGGTGACATATGACATAAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006887 GO:0006897 GO:0006909 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0012506 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030139 GO:0030175 GO:0030659 GO:0030666 GO:0030670 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0031090 GO:0031143 GO:0031252 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032535 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034622 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044433 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045010 GO:0045335 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051258 GO:0051493 GO:0051495 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098858 GO:0099568 GO:0110053 GO:0120025 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ARPC4

Protein Analysis

132

Amino Acids

14.06

Weight (kDa)

5.04

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARPC4	PF05856	81 - 119	7.2e-06	ARP2/3 complex 20 kDa subunit (ARPC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008901)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135391 RchiOBHm_Chr2g0144061 RchiOBHm_Chr2g0145391 RchiOBHm_Chr5g0001751
rosa_multiflora	Rmu_sc0001298.1_g000056 Rmu_sc0002083.1_g000023 Rmu_sc0003177.1_g000031 Rmu_sc0007367.1_g000004 Rmu_sc0015288.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244700 Rroxscaffold_4G00288140 Rroxscaffold_5G00347610
rosa_samantha	Rh1AG243000 Rh1CG226700 Rh1DG008100 Rh2AG337200 Rh5AG014000 Rh5AG127400 Rh5AG127800 Rh5BG548400 Rh5CG015100 Rh5CG571600 Rh7CG194400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	35, 63, 102, 135
AclWI	GGATC	2 cut(s)	126, 139
AcuI	CTGAAG	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	34, 352
AflIII	ACRYGT	1 cut(s)	253
AluBI	AGCT	3 cut(s)	145, 161, 185
AluI	AGCT	3 cut(s)	145, 161, 185
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	73, 290
AlwI	GGATC	2 cut(s)	126, 139
Ama87I	CYCGRG	2 cut(s)	89, 140
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	116, 278
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	2 cut(s)	89, 140
AvaII	GGWCC	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	131
BanII	GRGCYC	2 cut(s)	96, 147
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	103, 265
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	48, 50
BcoDI	GTCTC	2 cut(s)	73, 290
BfaI	CTAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	160
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	4 cut(s)	36, 102, 117, 279
BlsI	GCNGC	4 cut(s)	37, 103, 118, 280
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	2 cut(s)	89, 140
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	3 cut(s)	6, 39, 133
BmsI	GCATC	1 cut(s)	103
BoxI	GACNNNNGTC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpuEI	CTTGAG	3 cut(s)	141, 190, 311
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 352
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	34, 352
BseMII	CTCAG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	103, 265
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	2 cut(s)	89, 140
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	34, 352
BsmAI	GTCTC	2 cut(s)	73, 290
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	126
BsoBI	CYCGRG	2 cut(s)	89, 140
Bsp1286I	GDGCHC	2 cut(s)	96, 147
Bsp143I	GATC	1 cut(s)	131
Bsp68I	TCGCGA	1 cut(s)	111
BspACI	CCGC	4 cut(s)	35, 63, 102, 135
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	6, 39, 133
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	2 cut(s)	126, 139
BsrBI	CCGCTC	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	2 cut(s)	73, 290
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	257
BstPAI	GACNNNNGTC	1 cut(s)	225
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	103, 265
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	14
BtuMI	TCGCGA	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	149
CviAII	CATG	2 cut(s)	238, 254
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
DraI	TTTAAA	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	145
Eco24I	GRGCYC	2 cut(s)	96, 147
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	207
Eco88I	CYCGRG	2 cut(s)	89, 140
EcoICRI	GAGCTC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoT38I	GRGCYC	2 cut(s)	96, 147
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	2 cut(s)	241, 257
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	237, 253
FauNDI	CATATG	1 cut(s)	382
Fnu4HI	GCNGC	4 cut(s)	36, 102, 117, 279
FriOI	GRGCYC	2 cut(s)	96, 147
Fsp4HI	GCNGC	4 cut(s)	36, 102, 117, 279
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	4 cut(s)	36, 102, 117, 279
HaeIII	GGCC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	241, 257
HinfI	GANTC	1 cut(s)	176
HphI	GGTGA	1 cut(s)	388
Hpy188I	TCNGA	3 cut(s)	131, 149, 165
Hpy188III	TCNNGA	3 cut(s)	110, 140, 328
HpyAV	CCTTC	3 cut(s)	21, 64, 323
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	241, 257
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	2 cut(s)	10, 43
LpnPI	CCDG	1 cut(s)	165
Lsp1109I	GCAGC	2 cut(s)	103, 265
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	133
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	1 cut(s)	131
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	2 cut(s)	96, 147
MluCI	AATT	2 cut(s)	242, 291
MnlI	CCTC	9 cut(s)	52, 70, 89, 96, 115, 137, 268, 335, 356
MseI	TTAA	2 cut(s)	21, 290
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	241, 257
NlaIV	GGNNCC	3 cut(s)	6, 39, 133
NmuCI	GTSAC	1 cut(s)	376
NruI	TCGCGA	1 cut(s)	111
NspI	RCATGY	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	140
PciI	ACATGT	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	37, 103, 118, 280
PscI	ACATGT	1 cut(s)	253
PshAI	GACNNNNGTC	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	6, 39, 133
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	131
PsyI	GACNNNGTC	1 cut(s)	359
RruI	TCGCGA	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	21, 290
SatI	GCNGC	4 cut(s)	36, 102, 117, 279
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	96, 147
SetI	ASST	5 cut(s)	13, 147, 154, 163, 187
SfaNI	GCATC	1 cut(s)	103
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	4 cut(s)	140, 156, 169, 326
SmoI	CTYRAG	4 cut(s)	140, 156, 169, 326
Sse9I	AATT	2 cut(s)	242, 291
SsiI	CCGC	4 cut(s)	35, 63, 102, 135
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	147
TaqI	TCGA	3 cut(s)	81, 141, 197
TasI	AATT	2 cut(s)	242, 291
TauI	GCSGC	2 cut(s)	38, 104
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	21, 290
Tru9I	TTAA	2 cut(s)	21, 290
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	116, 278
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	350
XceI	RCATGY	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	140
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.