Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008901

Physical Location & Seq

Genomic Coordinates Reverse (-)

12126488 .. 12128869

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG127400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTCCACCTTCATCCTCTAAAGCCCACGCGGCGGCTCCCTCCACTCTCGCCTTCTCCTCCGCCGTCTCCAAGTCCCTCAACCCTCTCAGGCTTAGAGCCGCCTCTCGCGGTGCTGTTATTGGCCGCGGATCCGCTCTCAGAGCTCGTATGGTCTCAATGCCGACGATTAAGCCCCCGCTCTATCTTGATTTCGACACCTCTGTTTTCAACAAGGAGAAGATCAACCTCGCTGGTCACGATGAGAGTATTCATAGTGATTTGAGATATGGTATTTGGTTTTTGTTGATTTTGCAGTATATTGTAAAGGGAGGAAGGTACTTGTTCCATCTGCCGCCTGATGCCTTCAAGGGCATCAAGCAGATCGGTGTTATCGGTTGGGGTTCACAGTTTCAAAGTTTGGCAAAGATAGTTCCTATTCGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

IlvC IlvN

Protein Analysis

142

Amino Acids

15.44

Weight (kDa)

10.48

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008901)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135391 RchiOBHm_Chr2g0144061 RchiOBHm_Chr2g0145391 RchiOBHm_Chr5g0001751
rosa_multiflora	Rmu_sc0001298.1_g000056 Rmu_sc0002083.1_g000023 Rmu_sc0003177.1_g000031 Rmu_sc0007367.1_g000004 Rmu_sc0015288.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244700 Rroxscaffold_4G00288140 Rroxscaffold_5G00347610
rosa_samantha	Rh1AG243000 Rh1CG226700 Rh1DG008100 Rh2AG337200 Rh5AG014000 Rh5AG127400 Rh5AG127800 Rh5BG548400 Rh5CG015100 Rh5CG571600 Rh7CG194400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	137, 181
AccII	CGCG	3 cut(s)	32, 111, 129
AclWI	GGATC	2 cut(s)	126, 139
AcoI	YGGCCR	1 cut(s)	124
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	211, 349, 395
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	73, 160
AlwI	GGATC	2 cut(s)	126, 139
AoxI	GGCC	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	1 cut(s)	336
BceAI	ACGGC	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	73, 160
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	5 cut(s)	33, 36, 102, 127, 335
BlsI	GCNGC	5 cut(s)	34, 37, 103, 128, 336
BmiI	GGNNCC	3 cut(s)	6, 39, 133
BmsI	GCATC	2 cut(s)	331, 363
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	103, 154
BseRI	GAGGAG	1 cut(s)	49
Bsh1236I	CGCG	3 cut(s)	32, 111, 129
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	73, 160
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	131, 222, 363
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	102, 153
BspFNI	CGCG	3 cut(s)	32, 111, 129
BspLI	GGNNCC	3 cut(s)	6, 39, 133
BspPI	GGATC	2 cut(s)	126, 139
BspTNI	GGTCTC	1 cut(s)	160
BsrBI	CCGCTC	2 cut(s)	137, 181
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	3 cut(s)	131, 222, 363
Bst4CI	ACNGT	1 cut(s)	390
BstDEI	CTNAG	3 cut(s)	89, 95, 140
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	3 cut(s)	32, 111, 129
BstKTI	GATC	3 cut(s)	134, 225, 366
BstMAI	GTCTC	2 cut(s)	73, 160
BstMBI	GATC	3 cut(s)	131, 222, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 143
BstUI	CGCG	3 cut(s)	32, 111, 129
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	14
Cfr42I	CCGCGG	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	319
CviJI	RGCY	8 cut(s)	5, 26, 38, 94, 101, 126, 146, 175
CviKI_1	RGCY	8 cut(s)	5, 26, 38, 94, 101, 126, 146, 175
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	3 cut(s)	89, 95, 140
DpnI	GATC	3 cut(s)	133, 224, 365
DpnII	GATC	3 cut(s)	131, 222, 363
EaeI	YGGCCR	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	73
FaiI	YATR	4 cut(s)	152, 255, 270, 300
FaqI	GGGAC	1 cut(s)	61
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	33, 36, 102, 127, 335
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	5 cut(s)	33, 36, 102, 127, 335
GluI	GCNGC	5 cut(s)	33, 36, 102, 127, 335
HaeIII	GGCC	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	188, 239
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	4 cut(s)	21, 64, 309, 355
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 143
HpyF3I	CTNAG	3 cut(s)	89, 95, 140
KspI	CCGCGG	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	131, 222, 363
LmnI	GCTCC	2 cut(s)	10, 43
LpnPI	CCDG	3 cut(s)	76, 219, 351
LweI	GCATC	2 cut(s)	331, 363
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	3 cut(s)	133, 224, 365
MbiI	CCGCTC	2 cut(s)	137, 181
MboI	GATC	3 cut(s)	131, 222, 363
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	148
MnlI	CCTC	9 cut(s)	28, 52, 70, 89, 96, 115, 211, 239, 305
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	129
MvnI	CGCG	3 cut(s)	32, 111, 129
MwoI	GCNNNNNNNGC	2 cut(s)	32, 143
NdeII	GATC	3 cut(s)	131, 222, 363
NlaIV	GGNNCC	3 cut(s)	6, 39, 133
NmuCI	GTSAC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PkrI	GCNGC	5 cut(s)	34, 37, 103, 128, 336
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	6, 39, 133
PsuI	RGATCY	1 cut(s)	131
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	148
SacII	CCGCGG	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	5 cut(s)	33, 36, 102, 127, 335
Sau3AI	GATC	3 cut(s)	131, 222, 363
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	13, 148, 203, 231, 320
SfaNI	GCATC	2 cut(s)	331, 363
Sfr303I	CCGCGG	1 cut(s)	130
SgrBI	CCGCGG	1 cut(s)	130
SstI	GAGCTC	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	195
TauI	GCSGC	5 cut(s)	35, 38, 104, 129, 337
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.