Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007367.1

Orthogroup ID

OG0008901

Physical Location & Seq

Genomic Coordinates Forward (+)

7827 .. 8986

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007367.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgccttttcggttcagaattttctccaaacagtgccatgtggatttcgtcatcaccatttctatcaacctggatgagcagctgctgggttcgtcagggatggctccaccttcatcctctaaagcccacgcggcggctccctccactctcgccttctcctccgccgtctccaagtccctcaaccctctcaggctcagagccgcctctcgcggtgctgctattggccgcggatccgctctcagagctcgtatggtctcaatgccgacgattaagcccccgctctctcttgatttcgacacctctgttttcaacaaggagaagatcaacctcgctggtcacgatgagtatattgtaaagggagaaaggtacttgttccatctgccgcctgatgccttcccaggtgtatataaagatttggatgaggtgttgcagtcaaagacggtgtacttgaatgtttccaaaggtgttcttgccaagaccaaggatttggtagctgcgtttgggtcggatgatcagaccaagatttgtttagagatcttggataaaggggagcttcaggttgctgggaaggagagagagtctcagttgtccagtcaatttcgggatatcgccactattgttatgcagaaaacctataatccagagaaggcatcaagcagatcggtgttatcggttggggttcacaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

SBDS SBDS_C

Protein Analysis

229

Amino Acids

25.01

Weight (kDa)

9.41

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008901)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135391 RchiOBHm_Chr2g0144061 RchiOBHm_Chr2g0145391 RchiOBHm_Chr5g0001751
rosa_multiflora	Rmu_sc0001298.1_g000056 Rmu_sc0002083.1_g000023 Rmu_sc0003177.1_g000031 Rmu_sc0007367.1_g000004 Rmu_sc0015288.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244700 Rroxscaffold_4G00288140 Rroxscaffold_5G00347610
rosa_samantha	Rh1AG243000 Rh1CG226700 Rh1DG008100 Rh2AG337200 Rh5AG014000 Rh5AG127400 Rh5AG127800 Rh5BG548400 Rh5CG015100 Rh5CG571600 Rh7CG194400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	236, 280
AccII	CGCG	3 cut(s)	131, 210, 228
AclWI	GGATC	2 cut(s)	225, 238
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	539
AfaI	GTAC	2 cut(s)	368, 446
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	310, 451
AjnI	CCWGG	2 cut(s)	69, 397
AluBI	AGCT	4 cut(s)	82, 245, 494, 553
AluI	AGCT	4 cut(s)	82, 245, 494, 553
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	3 cut(s)	172, 259, 585
AlwI	GGATC	2 cut(s)	225, 238
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	4 cut(s)	79, 82, 215, 494
ApoI	RAATTY	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AsuHPI	GGTGA	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	4 cut(s)	69, 91, 202, 481
BccI	CCATC	2 cut(s)	94, 384
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	71, 399
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	3 cut(s)	172, 259, 585
BglI	GCCNNNNNGGC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	534
BisI	GCNGC	9 cut(s)	80, 83, 132, 135, 201, 216, 226, 383, 495
BlsI	GCNGC	9 cut(s)	81, 84, 133, 136, 202, 217, 227, 384, 496
Bme1390I	CCNGG	2 cut(s)	71, 399
BmiI	GGNNCC	3 cut(s)	105, 138, 232
BmrFI	CCNGG	2 cut(s)	71, 399
BmsI	GCATC	2 cut(s)	379, 659
BplI	GAGNNNNNCTC	2 cut(s)	565, 597
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	226, 397, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	71, 399
BseDI	CCNNGG	3 cut(s)	226, 397, 480
BseGI	GGATG	5 cut(s)	79, 105, 113, 424, 514
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	4 cut(s)	202, 208, 253, 596
BseNI	ACTGG	1 cut(s)	591
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	4 cut(s)	69, 91, 202, 481
BseYI	CCCAGC	2 cut(s)	85, 563
Bsh1236I	CGCG	3 cut(s)	131, 210, 228
BshFI	GGCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	172, 259, 585
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	5 cut(s)	230, 321, 511, 534, 659
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	4 cut(s)	201, 207, 252, 595
BspFNI	CGCG	3 cut(s)	131, 210, 228
BspLI	GGNNCC	3 cut(s)	105, 138, 232
BspPI	GGATC	2 cut(s)	225, 238
BspTNI	GGTCTC	1 cut(s)	259
BsrBI	CCGCTC	2 cut(s)	236, 280
BsrI	ACTGG	1 cut(s)	591
BssECI	CCNNGG	3 cut(s)	226, 397, 480
BssMI	GATC	5 cut(s)	230, 321, 511, 534, 659
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	2 cut(s)	71, 399
Bst4CI	ACNGT	2 cut(s)	33, 442
BstDEI	CTNAG	4 cut(s)	188, 194, 239, 582
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	79, 105, 113, 424, 514
BstFNI	CGCG	3 cut(s)	131, 210, 228
BstKTI	GATC	5 cut(s)	233, 324, 514, 537, 662
BstMAI	GTCTC	3 cut(s)	172, 259, 585
BstMBI	GATC	5 cut(s)	230, 321, 511, 534, 659
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 242
BstNI	CCWGG	2 cut(s)	71, 399
BstSCI	CCNGG	2 cut(s)	69, 397
BstUI	CGCG	3 cut(s)	131, 210, 228
BstV1I	GCAGC	4 cut(s)	69, 91, 202, 481
BstX2I	RGATCY	2 cut(s)	230, 534
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	2 cut(s)	230, 534
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	5 cut(s)	79, 105, 113, 424, 514
BtsIMutI	CAGTG	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	85
Cfr42I	CCGCGG	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	367, 445
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	2 cut(s)	367, 445
DdeI	CTNAG	4 cut(s)	188, 194, 239, 582
DpnI	GATC	5 cut(s)	232, 323, 513, 536, 661
DpnII	GATC	5 cut(s)	230, 321, 511, 534, 659
EaeI	YGGCCR	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	259
Eco32I	GATATC	1 cut(s)	607
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	69, 397
EcoRV	GATATC	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	1 cut(s)	41
FaiI	YATR	7 cut(s)	39, 251, 348, 406, 408, 623, 636
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 537, 569
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	37
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	9 cut(s)	80, 83, 132, 135, 201, 216, 226, 383, 495
FokI	GGATG	5 cut(s)	86, 100, 112, 431, 521
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	9 cut(s)	80, 83, 132, 135, 201, 216, 226, 383, 495
GluI	GCNGC	9 cut(s)	80, 83, 132, 135, 201, 216, 226, 383, 495
GsaI	CCCAGC	2 cut(s)	89, 567
HaeIII	GGCC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	41
HinfI	GANTC	1 cut(s)	578
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	445, 682
Hpy188I	TCNGA	5 cut(s)	17, 197, 242, 508, 516
Hpy188III	TCNNGA	4 cut(s)	287, 338, 602, 641
Hpy8I	GTNNAC	2 cut(s)	445, 682
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	5 cut(s)	120, 163, 403, 562, 640
HpyCH4III	ACNGT	2 cut(s)	33, 442
HpyCH4V	TGCA	2 cut(s)	430, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 242
HpyF3I	CTNAG	4 cut(s)	188, 194, 239, 582
Hsp92II	CATG	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	511
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	230, 321, 511, 534, 659
LmnI	GCTCC	3 cut(s)	109, 142, 550
Lsp1109I	GCAGC	4 cut(s)	69, 91, 202, 481
LweI	GCATC	2 cut(s)	379, 659
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	5 cut(s)	232, 323, 513, 536, 661
MbiI	CCGCTC	2 cut(s)	236, 280
MboI	GATC	5 cut(s)	230, 321, 511, 534, 659
MboII	GAAGA	1 cut(s)	331
MflI	RGATCY	2 cut(s)	230, 534
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	2 cut(s)	18, 596
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	9 cut(s)	127, 151, 169, 188, 195, 214, 310, 338, 415
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	2 cut(s)	82, 228
MspR9I	CCNGG	2 cut(s)	71, 399
MvaI	CCWGG	2 cut(s)	71, 399
MvnI	CGCG	3 cut(s)	131, 210, 228
MwoI	GCNNNNNNNGC	2 cut(s)	131, 242
NdeII	GATC	5 cut(s)	230, 321, 511, 534, 659
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	3 cut(s)	105, 138, 232
NmuCI	GTSAC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PkrI	GCNGC	9 cut(s)	81, 84, 133, 136, 202, 217, 227, 384, 496
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	69, 397
PspFI	CCCAGC	2 cut(s)	85, 563
PspGI	CCWGG	2 cut(s)	69, 397
PspN4I	GGNNCC	3 cut(s)	105, 138, 232
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	230, 534
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	2 cut(s)	368, 446
RsaNI	GTAC	2 cut(s)	367, 445
SacI	GAGCTC	1 cut(s)	247
SacII	CCGCGG	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	9 cut(s)	80, 83, 132, 135, 201, 216, 226, 383, 495
Sau3AI	GATC	5 cut(s)	230, 321, 511, 534, 659
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	2 cut(s)	71, 399
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	379, 659
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
Sse9I	AATT	2 cut(s)	18, 596
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	69, 397
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	33, 442
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	18, 596
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	5 cut(s)	134, 137, 203, 228, 385
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	4 cut(s)	79, 82, 215, 494
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.