Rroxscaffold_4G00288140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008901
Physical Location & Seq
Forward (+)
9020775 .. 9022574
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288140.1

Sequence Viewer

Length: 285 bp
ATGGCTCCACCTTCATCCTTTAAAGCCCACACGGCGGCTCCCTCCACTCTCGCCTTCTCCTCCGCCGTCTCCAAGTCCCTCAACCCTCTCGGGCTCATAGCCGCCTCTCGCGATGCTGCTATTGGCCTCGGATCCGCTCTCGAGCTCGGACCTGCTCAAGCTCAGAACTTGAGAGATTCTCTAGGCGAAGCAAAGTCGAATATTGTGGTCAAGTACGTCTTCCCCAAGCAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCGGGTATTGTTTTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.65

Weight (kDa)

8.12

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccBSI CCGCTC 1 cut(s) 137
AccII CGCG 1 cut(s) 111
AciI CCGC 4 cut(s) 35, 63, 102, 135
AclWI GGATC 2 cut(s) 126, 139
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 34
AluBI AGCT 3 cut(s) 145, 161, 257
AluI AGCT 3 cut(s) 145, 161, 257
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 126, 139
Ama87I CYCGRG 3 cut(s) 89, 140, 248
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 149
AvaI CYCGRG 3 cut(s) 89, 140, 248
AvaII GGWCC 1 cut(s) 149
BamHI GGATCC 1 cut(s) 131
BanII GRGCYC 2 cut(s) 96, 147
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 103
BceAI ACGGC 2 cut(s) 48, 50
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 3 cut(s) 36, 102, 117
BlsI GCNGC 3 cut(s) 37, 103, 118
Bme18I GGWCC 1 cut(s) 149
BmeT110I CYCGRG 3 cut(s) 89, 140, 248
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 3 cut(s) 6, 39, 133
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 163, 195
BpuEI CTTGAG 2 cut(s) 141, 190
BsaJI CCNNGG 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 3 cut(s) 89, 140, 248
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 1 cut(s) 126
BsoBI CYCGRG 3 cut(s) 89, 140, 248
Bsp1286I GDGCHC 2 cut(s) 96, 147
Bsp143I GATC 1 cut(s) 131
Bsp68I TCGCGA 1 cut(s) 111
BspACI CCGC 4 cut(s) 35, 63, 102, 135
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 3 cut(s) 6, 39, 133
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 126, 139
BsrBI CCGCTC 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 14
BtuMI TCGCGA 1 cut(s) 111
BveI ACCTGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 262
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
DraI TTTAAA 1 cut(s) 22
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 2 cut(s) 96, 147
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 145
Eco88I CYCGRG 3 cut(s) 89, 140, 248
EcoICRI GAGCTC 1 cut(s) 145
EcoT38I GRGCYC 2 cut(s) 96, 147
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 1 cut(s) 265
FaiI YATR 2 cut(s) 98, 263
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 61
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 3 cut(s) 36, 102, 117
FriOI GRGCYC 2 cut(s) 96, 147
Fsp4HI GCNGC 3 cut(s) 36, 102, 117
FspBI CTAG 1 cut(s) 182
GluI GCNGC 3 cut(s) 36, 102, 117
HaeIII GGCC 1 cut(s) 126
Hin1II CATG 1 cut(s) 265
HinfI GANTC 2 cut(s) 176, 244
Hpy188I TCNGA 4 cut(s) 131, 149, 165, 243
Hpy188III TCNNGA 3 cut(s) 110, 140, 248
HpyAV CCTTC 2 cut(s) 21, 64
HpyCH4IV ACGT 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 10, 43
LpnPI CCDG 1 cut(s) 165
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 216
MalI GATC 1 cut(s) 133
MbiI CCGCTC 1 cut(s) 137
MboI GATC 1 cut(s) 131
MboII GAAGA 1 cut(s) 211
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 2 cut(s) 96, 147
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 8 cut(s) 52, 70, 89, 96, 115, 137, 229, 244
MseI TTAA 1 cut(s) 21
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 1 cut(s) 131
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 3 cut(s) 6, 39, 133
NruI TCGCGA 1 cut(s) 111
PaeR7I CTCGAG 2 cut(s) 140, 248
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 3 cut(s) 37, 103, 118
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 147
PspN4I GGNNCC 3 cut(s) 6, 39, 133
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 131
RruI TCGCGA 1 cut(s) 111
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacI GAGCTC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 3 cut(s) 36, 102, 117
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 238
SduI GDGCHC 2 cut(s) 96, 147
SetI ASST 6 cut(s) 13, 147, 154, 163, 219, 259
SfaNI GCATC 1 cut(s) 103
Sfr274I CTCGAG 2 cut(s) 140, 248
SinI GGWCC 1 cut(s) 149
SlaI CTCGAG 2 cut(s) 140, 248
SmlI CTYRAG 4 cut(s) 140, 156, 169, 248
SmoI CTYRAG 4 cut(s) 140, 156, 169, 248
SsiI CCGC 4 cut(s) 35, 63, 102, 135
SspI AATATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 182
SstI GAGCTC 1 cut(s) 147
TaiI ACGT 1 cut(s) 219
TaqI TCGA 4 cut(s) 141, 197, 234, 249
TauI GCSGC 2 cut(s) 38, 104
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseI GCWGC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 149
XhoI CTCGAG 2 cut(s) 140, 248
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.