Rmu_sc0001298.1_g000056

Ribosome maturation protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001298.1
Physical Location & Seq
Reverse (-)
186535 .. 193360
6826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001298.1_g000056.1.cds

Sequence Viewer

Length: 1125 bp
atgcctttccggtttagaattttctccaaacagtgccatttggatttcgtcagcaccatttctatcaacctggatgagcagctgatgggttcgtcagggatggctccaccttcatccttagcccacgcggcgggtccctccactctcgccttctcctccgccgtctccaagtccctcaaccctctcaggctcagagccgcctctcgcggtgctgctattggccgcggatccgctctcagagctcgtatggtctcaatgccgacgattaagcccccgctctctcttgatttcgacacctctgttttcaacaaggagaagatcaacctcgctggtcacgatgagtatattgtaaagggagaaaggtacttgttccatctgccgcctgatgccttcccaggtgtatataaagatttggatgaggtgttgcagtcaaagacggtgtacttgaatgtttccaaaggtgttcttgccaagaccaaggatttggtagctgcgtttgggtcggatgatcagaccaagatttgtttagagatcttggataaaggggagcttcaggttgctgggaaggagagagagtctcagttgtccagtcaatttcgggatatcgccactattgttatgcagaaaacctataatccagagaaggcatcaagcagatcggtgttatcggttggggttcacagagaggctcatcaatcaggattagaagcttcccaaccggctctaactcaatatcgggtgcttggtcctatgataaatggatgctcatggattgaattacaaccactcactagccaaaagcatcagttggctactatttggttggagcacaagtattcccctagctggagcactacttttggccttaaggcaacattgttctggagaaatctgagaggagttggcatgaaatacaaaaagctttcaggggctccggccggaacctcgccgtccggccatctctggccgtcgtgccggcgccaatatcttcgtcttggtgtcgttgtcccatctccagtcttcgttcatcgaatcgtcaagtttggagagcaaatcgacggtgagaagcttgaagactccggcagttttgcagcaaattctggcgacttcacgcctcagctgtaa

Protein Analysis

374

Amino Acids

41.08

Weight (kDa)

9.43

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 978
AccBSI CCGCTC 2 cut(s) 233, 277
AccII CGCG 3 cut(s) 128, 207, 225
AclWI GGATC 2 cut(s) 222, 235
AcoI YGGCCR 4 cut(s) 220, 936, 955, 965
AcsI RAATTY 2 cut(s) 18, 1096
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 979
AfaI GTAC 2 cut(s) 365, 443
AfiI CCNNNNNNNGG 2 cut(s) 130, 846
AflII CTTAAG 1 cut(s) 866
AgsI TTSAA 4 cut(s) 307, 448, 776, 1073
AjnI CCWGG 2 cut(s) 69, 394
AluBI AGCT 9 cut(s) 82, 242, 491, 550, 710, 846, 922, 1069, 1120
AluI AGCT 9 cut(s) 82, 242, 491, 550, 710, 846, 922, 1069, 1120
Alw21I GWGCWC 3 cut(s) 244, 831, 854
Alw26I GTCTC 3 cut(s) 169, 256, 582
AlwI GGATC 2 cut(s) 222, 235
AoxI GGCC 5 cut(s) 220, 862, 936, 955, 965
ApeKI GCWGC 4 cut(s) 79, 212, 491, 1091
ApoI RAATTY 2 cut(s) 18, 1096
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
AspLEI GCGC 1 cut(s) 981
AspS9I GGNCC 2 cut(s) 134, 746
AsuHPI GGTGA 1 cut(s) 1073
AvaII GGWCC 2 cut(s) 134, 746
BamHI GGATCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 978
BanII GRGCYC 2 cut(s) 244, 934
BbsI GAAGAC 2 cut(s) 1012, 1080
Bbv12I GWGCWC 3 cut(s) 244, 831, 854
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 4 cut(s) 91, 199, 478, 1103
BccI CCATC 5 cut(s) 79, 94, 381, 966, 1018
BceAI ACGGC 3 cut(s) 146, 934, 952
BciT130I CCWGG 2 cut(s) 71, 396
BclI TGATCA 1 cut(s) 508
BcoDI GTCTC 3 cut(s) 169, 256, 582
BfaI CTAG 2 cut(s) 792, 843
BfoI RGCGCY 1 cut(s) 982
BfrI CTTAAG 1 cut(s) 866
BglI GCCNNNNNGGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 531
BisI GCNGC 8 cut(s) 80, 129, 198, 213, 223, 380, 492, 1092
BlsI GCNGC 8 cut(s) 81, 130, 199, 214, 224, 381, 493, 1093
Bme1390I CCNGG 2 cut(s) 71, 396
Bme18I GGWCC 2 cut(s) 134, 746
BmgT120I GGNCC 2 cut(s) 134, 746
BmiI GGNNCC 7 cut(s) 105, 135, 136, 229, 933, 943, 980
BmrFI CCNGG 2 cut(s) 71, 396
BmsI GCATC 4 cut(s) 376, 656, 752, 811
BpiI GAAGAC 2 cut(s) 1012, 1080
BplI GAGNNNNNCTC 2 cut(s) 562, 594
BpmI CTGGAG 3 cut(s) 868, 904, 999
Bpu10I CCTNAGC 2 cut(s) 118, 1116
BsaHI GRCGYC 1 cut(s) 979
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 3 cut(s) 223, 394, 477
BsaWI WCCGGW 1 cut(s) 9
BsaXI ACNNNNNCTCC 4 cut(s) 560, 590, 818, 848
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 846
Bse118I RCCGGY 2 cut(s) 718, 975
Bse1I ACTGG 2 cut(s) 588, 1016
BseBI CCWGG 2 cut(s) 71, 396
BseDI CCNNGG 3 cut(s) 223, 394, 477
BseGI GGATG 6 cut(s) 79, 105, 113, 421, 511, 767
BseLI CCNNNNNNNGG 2 cut(s) 130, 846
BseMII CTCAG 5 cut(s) 199, 205, 250, 593, 884
BseNI ACTGG 2 cut(s) 588, 1016
BseRI GAGGAG 2 cut(s) 145, 912
BseX3I CGGCCG 1 cut(s) 936
BseXI GCAGC 4 cut(s) 91, 199, 478, 1103
BseYI CCCAGC 1 cut(s) 560
Bsh1236I CGCG 3 cut(s) 128, 207, 225
Bsh1285I CGRYCG 1 cut(s) 939
BshFI GGCC 5 cut(s) 222, 864, 938, 957, 967
BshNI GGYRCC 1 cut(s) 978
BsiEI CGRYCG 1 cut(s) 939
BsiHKAI GWGCWC 3 cut(s) 244, 831, 854
BsiSI CCGG 7 cut(s) 10, 719, 935, 939, 954, 976, 1080
BslFI GGGAC 3 cut(s) 120, 157, 992
BslI CCNNNNNNNGG 2 cut(s) 130, 846
BsmAI GTCTC 3 cut(s) 169, 256, 582
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 3 cut(s) 120, 157, 992
BsnI GGCC 5 cut(s) 222, 864, 938, 957, 967
Bso31I GGTCTC 1 cut(s) 256
Bsp1286I GDGCHC 4 cut(s) 244, 831, 854, 934
Bsp143I GATC 5 cut(s) 227, 318, 508, 531, 656
BspANI GGCC 5 cut(s) 222, 864, 938, 957, 967
BspCNI CTCAG 5 cut(s) 198, 204, 249, 592, 885
BspFNI CGCG 3 cut(s) 128, 207, 225
BspLI GGNNCC 7 cut(s) 105, 135, 136, 229, 933, 943, 980
BspPI GGATC 2 cut(s) 222, 235
BspT107I GGYRCC 1 cut(s) 978
BspTI CTTAAG 1 cut(s) 866
BspTNI GGTCTC 1 cut(s) 256
BsrBI CCGCTC 2 cut(s) 233, 277
BsrFI RCCGGY 2 cut(s) 718, 975
BsrI ACTGG 2 cut(s) 588, 1016
BssAI RCCGGY 2 cut(s) 718, 975
BssECI CCNNGG 3 cut(s) 223, 394, 477
BssMI GATC 5 cut(s) 227, 318, 508, 531, 656
BssNI GRCGYC 1 cut(s) 979
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 71, 396
Bst4CI ACNGT 3 cut(s) 33, 439, 1061
BstACI GRCGYC 1 cut(s) 979
BstAFI CTTAAG 1 cut(s) 866
BstC8I GCNNGC 1 cut(s) 977
BstDEI CTNAG 7 cut(s) 118, 185, 191, 236, 579, 893, 1116
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 6 cut(s) 79, 105, 113, 421, 511, 767
BstFNI CGCG 3 cut(s) 128, 207, 225
BstH2I RGCGCY 1 cut(s) 982
BstHHI GCGC 1 cut(s) 981
BstKTI GATC 5 cut(s) 230, 321, 511, 534, 659
BstMAI GTCTC 3 cut(s) 169, 256, 582
BstMBI GATC 5 cut(s) 227, 318, 508, 531, 656
BstMCI CGRYCG 1 cut(s) 939
BstMWI GCNNNNNNNGC 2 cut(s) 128, 239
BstNI CCWGG 2 cut(s) 71, 396
BstSCI CCNGG 2 cut(s) 69, 394
BstUI CGCG 3 cut(s) 128, 207, 225
BstV1I GCAGC 4 cut(s) 91, 199, 478, 1103
BstV2I GAAGAC 2 cut(s) 1012, 1080
BstX2I RGATCY 2 cut(s) 227, 531
BstXI CCANNNNNNTGG 1 cut(s) 484
BstYI RGATCY 2 cut(s) 227, 531
BstZI CGGCCG 1 cut(s) 936
BsuRI GGCC 5 cut(s) 222, 864, 938, 957, 967
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 6 cut(s) 79, 105, 113, 421, 511, 767
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 977
CfoI GCGC 1 cut(s) 981
Cfr10I RCCGGY 2 cut(s) 718, 975
Cfr13I GGNCC 2 cut(s) 134, 746
Cfr42I CCGCGG 1 cut(s) 226
Csp6I GTAC 2 cut(s) 364, 442
CviAII CATG 2 cut(s) 768, 907
CviQI GTAC 2 cut(s) 364, 442
DdeI CTNAG 7 cut(s) 118, 185, 191, 236, 579, 893, 1116
DinI GGCGCC 1 cut(s) 980
DpnI GATC 5 cut(s) 229, 320, 510, 533, 658
DpnII GATC 5 cut(s) 227, 318, 508, 531, 656
EaeI YGGCCR 4 cut(s) 220, 936, 955, 965
EagI CGGCCG 1 cut(s) 936
EciI GGCGGA 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 242
EclXI CGGCCG 1 cut(s) 936
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 2 cut(s) 244, 934
Eco31I GGTCTC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 604
Eco47I GGWCC 2 cut(s) 134, 746
Eco52I CGGCCG 1 cut(s) 936
Eco53kI GAGCTC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 69, 394
EcoRV GATATC 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 2 cut(s) 244, 934
EgeI GGCGCC 1 cut(s) 980
EheI GGCGCC 1 cut(s) 980
ErhI CCWWGG 1 cut(s) 477
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 2 cut(s) 771, 910
FaiI YATR 9 cut(s) 248, 345, 403, 405, 620, 633, 752, 769, 908
FalI AAGNNNNNCTT 4 cut(s) 450, 482, 534, 566
FaqI GGGAC 3 cut(s) 120, 157, 992
FatI CATG 2 cut(s) 767, 906
FauI CCCGC 2 cut(s) 124, 282
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 8 cut(s) 80, 129, 198, 213, 223, 380, 492, 1092
FokI GGATG 6 cut(s) 86, 100, 112, 428, 518, 774
FriOI GRGCYC 2 cut(s) 244, 934
Fsp4HI GCNGC 8 cut(s) 80, 129, 198, 213, 223, 380, 492, 1092
FspBI CTAG 2 cut(s) 792, 843
GlaI GCGC 1 cut(s) 980
GluI GCNGC 8 cut(s) 80, 129, 198, 213, 223, 380, 492, 1092
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 3 cut(s) 868, 904, 999
HaeII RGCGCY 1 cut(s) 982
HaeIII GGCC 5 cut(s) 222, 864, 938, 957, 967
HapII CCGG 7 cut(s) 10, 719, 935, 939, 954, 976, 1080
HhaI GCGC 1 cut(s) 981
Hin1I GRCGYC 1 cut(s) 979
Hin1II CATG 2 cut(s) 771, 910
Hin6I GCGC 1 cut(s) 979
HinP1I GCGC 1 cut(s) 979
HindIII AAGCTT 3 cut(s) 708, 920, 1067
HinfI GANTC 3 cut(s) 575, 1032, 1076
HpaII CCGG 7 cut(s) 10, 719, 935, 939, 954, 976, 1080
HphI GGTGA 1 cut(s) 1073
Hpy166II GTNNAC 2 cut(s) 442, 679
Hpy188I TCNGA 5 cut(s) 194, 239, 505, 513, 894
Hpy188III TCNNGA 6 cut(s) 284, 335, 599, 638, 699, 883
Hpy8I GTNNAC 2 cut(s) 442, 679
Hpy99I CGWCG 3 cut(s) 265, 973, 1061
HpyAV CCTTC 5 cut(s) 120, 160, 400, 559, 637
HpyCH4III ACNGT 3 cut(s) 33, 439, 1061
HpyCH4V TGCA 3 cut(s) 427, 622, 1091
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 239
HpyF3I CTNAG 7 cut(s) 118, 185, 191, 236, 579, 893, 1116
Hsp92I GRCGYC 1 cut(s) 979
Hsp92II CATG 2 cut(s) 771, 910
HspAI GCGC 1 cut(s) 979
KasI GGCGCC 1 cut(s) 978
KflI GGGWCCC 1 cut(s) 134
KroI GCCGGC 1 cut(s) 975
KroNI GCCGGC 1 cut(s) 977
Ksp22I TGATCA 1 cut(s) 508
KspI CCGCGG 1 cut(s) 226
Kzo9I GATC 5 cut(s) 227, 318, 508, 531, 656
LmnI GCTCC 5 cut(s) 109, 547, 826, 849, 937
Lsp1109I GCAGC 4 cut(s) 91, 199, 478, 1103
LweI GCATC 4 cut(s) 376, 656, 752, 811
MaeI CTAG 2 cut(s) 792, 843
MaeIII GTNAC 1 cut(s) 332
MalI GATC 5 cut(s) 229, 320, 510, 533, 658
MbiI CCGCTC 2 cut(s) 233, 277
MboI GATC 5 cut(s) 227, 318, 508, 531, 656
MboII GAAGA 4 cut(s) 328, 980, 1012, 1085
MflI RGATCY 2 cut(s) 227, 531
MhlI GDGCHC 4 cut(s) 244, 831, 854, 934
MluCI AATT 4 cut(s) 18, 593, 776, 1096
Mly113I GGCGCC 1 cut(s) 979
MlyI GAGTC 2 cut(s) 584, 1070
MmeI TCCRAC 2 cut(s) 483, 804
MroNI GCCGGC 1 cut(s) 975
MseI TTAA 2 cut(s) 267, 867
MspA1I CMGCKG 3 cut(s) 82, 225, 1120
MspCI CTTAAG 1 cut(s) 866
MspI CCGG 7 cut(s) 10, 719, 935, 939, 954, 976, 1080
MspR9I CCNGG 2 cut(s) 71, 396
MvaI CCWGG 2 cut(s) 71, 396
MvnI CGCG 3 cut(s) 128, 207, 225
MwoI GCNNNNNNNGC 2 cut(s) 128, 239
NaeI GCCGGC 1 cut(s) 977
NarI GGCGCC 1 cut(s) 979
NdeII GATC 5 cut(s) 227, 318, 508, 531, 656
NgoMIV GCCGGC 1 cut(s) 975
NlaIII CATG 2 cut(s) 771, 910
NlaIV GGNNCC 7 cut(s) 105, 135, 136, 229, 933, 943, 980
NmuCI GTSAC 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 977
PfeI GAWTC 1 cut(s) 1032
PkrI GCNGC 8 cut(s) 81, 130, 199, 214, 224, 381, 493, 1093
PleI GAGTC 2 cut(s) 583, 1070
PluTI GGCGCC 1 cut(s) 982
PpsI GAGTC 2 cut(s) 583, 1070
PpuMI RGGWCCY 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 69, 394
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 2 cut(s) 69, 394
PspN4I GGNNCC 7 cut(s) 105, 135, 136, 229, 933, 943, 980
PspPI GGNCC 2 cut(s) 134, 746
PspPPI RGGWCCY 1 cut(s) 134
PsuI RGATCY 2 cut(s) 227, 531
PvuII CAGCTG 2 cut(s) 82, 1120
RsaI GTAC 2 cut(s) 365, 443
RsaNI GTAC 2 cut(s) 364, 442
SacI GAGCTC 1 cut(s) 244
SacII CCGCGG 1 cut(s) 226
SaqAI TTAA 2 cut(s) 267, 867
SatI GCNGC 8 cut(s) 80, 129, 198, 213, 223, 380, 492, 1092
Sau3AI GATC 5 cut(s) 227, 318, 508, 531, 656
Sau96I GGNCC 2 cut(s) 134, 746
SchI GAGTC 2 cut(s) 584, 1070
ScrFI CCNGG 2 cut(s) 71, 396
SduI GDGCHC 4 cut(s) 244, 831, 854, 934
SfaNI GCATC 4 cut(s) 376, 656, 752, 811
SfoI GGCGCC 1 cut(s) 980
Sfr303I CCGCGG 1 cut(s) 226
SgrBI CCGCGG 1 cut(s) 226
SinI GGWCC 2 cut(s) 134, 746
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
Sse9I AATT 4 cut(s) 18, 593, 776, 1096
SspDI GGCGCC 1 cut(s) 978
SspMI CTAG 2 cut(s) 792, 843
SstI GAGCTC 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 69, 394
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 3 cut(s) 33, 439, 1061
TaqI TCGA 3 cut(s) 291, 1030, 1056
TasI AATT 4 cut(s) 18, 593, 776, 1096
TatI WGTACW 1 cut(s) 441
TauI GCSGC 4 cut(s) 131, 200, 225, 382
TfiI GAWTC 1 cut(s) 1032
Tru1I TTAA 2 cut(s) 267, 867
Tru9I TTAA 2 cut(s) 267, 867
TscAI CASTG 1 cut(s) 38
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 4 cut(s) 79, 212, 491, 1091
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 3 cut(s) 102, 923, 1016
TspRI CASTG 1 cut(s) 38
Vha464I CTTAAG 1 cut(s) 866
VpaK11BI GGWCC 2 cut(s) 134, 746
XapI RAATTY 2 cut(s) 18, 1096
XspI CTAG 2 cut(s) 792, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.