Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003782

Physical Location & Seq

Genomic Coordinates Forward (+)

64260497 .. 64261014

Gene Structure 518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATGTTTAACCTTAGTCACTCATGCAGCAGGAGGCATAGCTGCAGGACAACTGAGGATGACTCTTCAAGTGCTTCAACTTCAAGAGAAGCAGCCACTTACAAACAGAAGTTAGATGGTCACTATATACTACAAAAATCAACTCAACATGCTTCTGTACAAAGAGCACCAAATGACAATTCCAACCATCAAGGAGATTCGTTGTCAAGAAATAATGGTTTCGGTGTGAATACCAAGCCCTCACATGATCAGTTTGTGGATAATGGGGCCTCGACTCCCTTGTGTGGAAATGTTATGGCTGGAAATATGAGCCTTAGATGTGTAAACTCTGAAAAGTTAAATGATGTATGGGCACAGTGTATTGAGAAGTGTCATTCAAAGACATTGAGGCAGCTACTACATTCTCATGGAAAGCTAGTGTCTATATCTGAAGCTGAAGGTAAGCTCTTAAGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

152

Amino Acids

16.69

Weight (kDa)

8.58

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaA_N-like_STI	PF23007	106 - 148	1.7e-14	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14460 AT2G02480 AT2G02480
fragaria_vesca	FvH4_5g27450 FvH4_5g27450
malus_domestica	MD08G1249500.v1.1
prunus_persica	Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1 Prupe.1G586700_v2.0.a1
pyrus_communis	pycom08g21590
rosa_chinensis	RchiOBHm_Chr2g0146641 RchiOBHm_Chr7g0218871
rosa_laevigata	RLG00000001635 RLG00000002346 RLG00000002355
rosa_multiflora	Rmu_sc0003823.1_g000001 Rmu_sc0006998.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240440
rosa_rugosa	Rorug07G0179300
rosa_samantha	Rh3AG021300 Rh3CG020600 Rh5BG537900 Rh5CG561800 Rh7AG322600 Rh7BG313700 Rh7CG339400 Rh7DG319800 Rh7DG389400
rosa_wichuraiana	Rw5G027500 Rw7G026930 Rw7G027310 Rw7G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	450, 456
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflII	CTTAAG	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	69, 78, 84, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	6 cut(s)	42, 394, 415, 434, 445, 453
AluI	AGCT	6 cut(s)	42, 394, 415, 434, 445, 453
Alw21I	GWGCWC	1 cut(s)	169
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	4 cut(s)	27, 42, 92, 391
AspS9I	GGNCC	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	29, 39, 104, 403
BccI	CCATC	2 cut(s)	110, 195
BclI	TGATCA	1 cut(s)	247
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	43
BfrI	CTTAAG	1 cut(s)	448
BisI	GCNGC	4 cut(s)	28, 43, 93, 392
BlsI	GCNGC	4 cut(s)	29, 44, 94, 393
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	268
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	4 cut(s)	29, 39, 104, 403
BshFI	GGCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	284
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	169, 355
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	448
BsrGI	TGTACA	1 cut(s)	157
BssMI	GATC	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	70
BstAFI	CTTAAG	1 cut(s)	448
BstAUI	TGTACA	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	14, 54, 314
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	43
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	4 cut(s)	29, 39, 104, 403
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	4 cut(s)	24, 149, 245, 407
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	3 cut(s)	14, 54, 314
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	450, 456
EcoO109I	RGGNCCY	1 cut(s)	267
FaeI	CATG	4 cut(s)	27, 152, 248, 410
FatI	CATG	4 cut(s)	23, 148, 244, 406
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	28, 43, 93, 392
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	28, 43, 93, 392
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	4 cut(s)	28, 43, 93, 392
HaeIII	GGCC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	27, 152, 248, 410
HinfI	GANTC	3 cut(s)	62, 197, 274
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	331, 430
Hpy188III	TCNNGA	2 cut(s)	84, 207
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	27, 45
HpyF3I	CTNAG	3 cut(s)	14, 54, 314
Hsp92II	CATG	4 cut(s)	27, 152, 248, 410
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	458
LpnPI	CCDG	3 cut(s)	16, 31, 285
Lsp1109I	GCAGC	4 cut(s)	29, 39, 104, 403
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	2 cut(s)	17, 119
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	169, 355
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	56, 268
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	5 cut(s)	27, 49, 250, 280, 381
MseI	TTAA	3 cut(s)	9, 338, 449
MslI	CAYNNNNRTG	1 cut(s)	405
MspCI	CTTAAG	1 cut(s)	448
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	4 cut(s)	27, 152, 248, 410
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	17, 119
NspI	RCATGY	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	29, 44, 94, 393
PleI	GAGTC	2 cut(s)	56, 268
PpsI	GAGTC	2 cut(s)	56, 268
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	9, 338, 449
SatI	GCNGC	4 cut(s)	28, 43, 93, 392
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	2 cut(s)	56, 268
SduI	GDGCHC	2 cut(s)	169, 355
SetI	ASST	8 cut(s)	15, 44, 396, 417, 436, 442, 447, 455
SfcI	CTRYAG	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	272
TasI	AATT	1 cut(s)	178
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	3 cut(s)	9, 338, 449
Tru9I	TTAA	3 cut(s)	9, 338, 449
TscAI	CASTG	1 cut(s)	362
TseFI	GTSAC	2 cut(s)	17, 119
TseI	GCWGC	4 cut(s)	27, 42, 92, 391
Tsp45I	GTSAC	2 cut(s)	17, 119
TspRI	CASTG	1 cut(s)	362
Vha464I	CTTAAG	1 cut(s)	448
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.