Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003011

Physical Location & Seq

Genomic Coordinates Forward (+)

10238631 .. 10243832

Gene Structure 5202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCTTGTGGAGAAGATATTCAATTCCCACTAGAGTTGGAGGAATCGTCGTCAGTACCAGCAGAAGCTCATGGTAGCAATGATGAACTTAAAGATTCAGGGCAGGAGCTTCTTGCTCAACCTTTAAGAAGTAATGAGTTGAAGTCCCTACTCGCTGATTCTGAAAGAACAAAGCTCATTAAAAAACTAAGTGAAGCCAATCAACAAAACCGATTCCTGAAAAGACAGTTGCATATAAAGGAGGATGCATTAATTAACTTCAAAAGCGAACTTGCTGTCATGGAACTTTATTCAGGCTTTGGTGAAATTGGCAGAAGAAAACGCAAAATCTGTCCTTCCAGTTGTTTCAAGAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM

Protein Analysis

119

Amino Acids

13.47

Weight (kDa)

6.16

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39790 AT5G39790 AT5G39790
fragaria_vesca	FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800 FvH4_7g02800
malus_domestica	MD02G1289900.v1.1 MD07G1037100.v1.1
prunus_persica	Prupe.7G052900_v2.0.a1 Prupe.7G052900_v2.0.a1
pyrus_communis	pycom07g02590
rosa_chinensis	RchiOBHm_Chr1g0322351 RchiOBHm_Chr1g0322821 RchiOBHm_Chr1g0323231
rosa_laevigata	RLG00000030346
rosa_multiflora	Rmu_co8185334.1_g000001 Rmu_sc0001035.1_g000019 Rmu_sc0002132.1_g000006 Rmu_sc0002132.1_g000011 Rmu_sc0002263.1_g000066
rosa_roxburghii	Rroxscaffold_4G00326740 Rroxscaffold_4G00326820 Rroxscaffold_4G00327100
rosa_rugosa	Rorug01G0036800
rosa_samantha	Rh1AG050500 Rh1AG051200 Rh1AG054100 Rh1BG046800 Rh1BG109500 Rh1CG054800 Rh1CG055000 Rh1DG058900 Rh6BG520800
rosa_wichuraiana	Rw1G004480 Rw1G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	57
AgsI	TTSAA	4 cut(s)	23, 142, 262, 349
AluBI	AGCT	3 cut(s)	68, 109, 175
AluI	AGCT	3 cut(s)	68, 109, 175
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AseI	ATTAAT	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	314
BfaI	CTAG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	2 cut(s)	71, 280
CviJI	RGCY	5 cut(s)	68, 109, 175, 197, 297
CviKI_1	RGCY	5 cut(s)	68, 109, 175, 197, 297
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	188
EcoT22I	ATGCAT	1 cut(s)	250
FaeI	CATG	2 cut(s)	74, 283
FaiI	YATR	4 cut(s)	72, 234, 236, 281
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	2 cut(s)	70, 279
FokI	GGATG	1 cut(s)	257
FspBI	CTAG	1 cut(s)	32
Hin1II	CATG	2 cut(s)	74, 283
HinfI	GANTC	4 cut(s)	44, 95, 158, 213
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	217, 349
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	232, 248
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	74, 283
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	72, 84, 89, 230, 279, 352
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	32
MboII	GAAGA	2 cut(s)	26, 327
MluCI	AATT	3 cut(s)	23, 252, 306
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	2 cut(s)	34, 235
Mph1103I	ATGCAT	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	6 cut(s)	90, 125, 180, 251, 255, 358
NlaIII	CATG	2 cut(s)	74, 283
NsiI	ATGCAT	1 cut(s)	250
PacI	TTAATTAA	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	4 cut(s)	44, 95, 158, 213
PshBI	ATTAAT	1 cut(s)	251
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SaqAI	TTAA	6 cut(s)	90, 125, 180, 251, 255, 358
SetI	ASST	4 cut(s)	70, 111, 124, 177
SfaNI	GCATC	1 cut(s)	235
Sse9I	AATT	3 cut(s)	23, 252, 306
SspMI	CTAG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	228
TasI	AATT	3 cut(s)	23, 252, 306
TfiI	GAWTC	4 cut(s)	44, 95, 158, 213
Tru1I	TTAA	6 cut(s)	90, 125, 180, 251, 255, 358
Tru9I	TTAA	6 cut(s)	90, 125, 180, 251, 255, 358
TspDTI	ATGAA	1 cut(s)	99
VspI	ATTAAT	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.