RchiOBHm_Chr1g0340191

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004244
Physical Location & Seq
Reverse (-)
31769350 .. 31770032
683 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 630 bp
ATGGCTATGACTATGAGACTGATCCAATTACTGGTGATCATATCGGTAATTGCTTTGGCCCTGTCCAGAAGAGCGCTGGCAAGTGATCCTGACATCACTTCCGATTACATACTCCCAGAAAACCACACGAGCACAACTGCTGATGCCTCATTCTTCACATACACAGGATTCCGCGGCTTATTTGATCAAGCACCCAAAACCTTCACGGCAACAAAAGCAAGCATGGATGAGTTCCCTGCTCTCAAAGGCCAGAGTGTGTCATACGCCATGCTTCAATTCCCTCCAAACACAATATTCCCACCTCACACCCGCCTTGACTCTGCCGGACTTATGTTTGTCCTTACTGGTTCCTTGGAAGTAGGCCTAATCGACACGAAAAACGTTCTGTATACTAAAAAGCTTCAAGCTGGAGATATGTTTGTGTTTCCTAAGGGATTGATCCATTATCAGTATAACGCGGATCCTAATTTGCCAGCCACTGCCATTGCAGCATTTGGAAGCGCAAGCGCTAGAACAGTTGCAGTTCCAGCCTCTATCTTCAGCTCTGGAATTCGTGATGTTGTCCTGGCAAAATCATTCAAGACAGATGTTAGTACCGTTAGGAAGATCAGGGCTGGCCTAAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

209

Amino Acids

22.62

Weight (kDa)

9.48

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 67 - 200 1.2e-25 Cupin
Cupin_2 PF07883 91 - 163 7.1e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AccI GTMKAC 1 cut(s) 389
AccII CGCG 2 cut(s) 174, 458
AciI CCGC 4 cut(s) 172, 174, 310, 458
AclI AACGTT 1 cut(s) 381
AclWI GGATC 5 cut(s) 16, 80, 433, 455, 468
AcsI RAATTY 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 523
AfaI GTAC 1 cut(s) 595
AfeI AGCGCT 2 cut(s) 75, 508
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 3 cut(s) 275, 404, 580
AjnI CCWGG 1 cut(s) 564
AluBI AGCT 3 cut(s) 400, 407, 543
AluI AGCT 3 cut(s) 400, 407, 543
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 5 cut(s) 16, 80, 433, 455, 468
AlwNI CAGNNNCTG 1 cut(s) 479
Aor51HI AGCGCT 2 cut(s) 75, 508
AoxI GGCC 4 cut(s) 57, 247, 361, 616
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 549
AspLEI GCGC 3 cut(s) 76, 503, 509
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 46
AxyI CCTNAGG 1 cut(s) 429
BamHI GGATCC 1 cut(s) 460
BauI CACGAG 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 500
BceAI ACGGC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 566
BclI TGATCA 2 cut(s) 36, 184
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 1 cut(s) 510
BfoI RGCGCY 2 cut(s) 77, 510
BisI GCNGC 2 cut(s) 175, 489
BlsI GCNGC 2 cut(s) 176, 490
Bme1390I CCNGG 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 349, 462
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 172, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 36, 349
Bse21I CCTNAGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 2 cut(s) 172, 351
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMI GCAATG 1 cut(s) 483
BseNI ACTGG 2 cut(s) 36, 349
BseXI GCAGC 1 cut(s) 500
Bsh1236I CGCG 2 cut(s) 174, 458
BshFI GGCC 4 cut(s) 59, 249, 363, 618
BsiHKAI GWGCWC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 10
BsnI GGCC 4 cut(s) 59, 249, 363, 618
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 7 cut(s) 21, 36, 85, 184, 438, 460, 606
BspACI CCGC 4 cut(s) 172, 174, 310, 458
BspANI GGCC 4 cut(s) 59, 249, 363, 618
BspFNI CGCG 2 cut(s) 174, 458
BspLI GGNNCC 2 cut(s) 349, 462
BspPI GGATC 5 cut(s) 16, 80, 433, 455, 468
BspQI GCTCTTC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 2 cut(s) 36, 349
BssECI CCNNGG 2 cut(s) 172, 351
BssMI GATC 7 cut(s) 21, 36, 85, 184, 438, 460, 606
BssNAI GTATAC 1 cut(s) 390
BssSI CACGAG 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 351
Bst1107I GTATAC 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 2 cut(s) 517, 598
Bst6I CTCTTC 1 cut(s) 64
BstC8I GCNNGC 5 cut(s) 78, 220, 474, 505, 616
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 2 cut(s) 174, 458
BstH2I RGCGCY 2 cut(s) 77, 510
BstHHI GCGC 3 cut(s) 76, 503, 509
BstKTI GATC 7 cut(s) 24, 39, 88, 187, 441, 463, 609
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 7 cut(s) 21, 36, 85, 184, 438, 460, 606
BstMWI GCNNNNNNNGC 3 cut(s) 215, 488, 527
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 564
BstUI CGCG 2 cut(s) 174, 458
BstV1I GCAGC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
BstZ17I GTATAC 1 cut(s) 390
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 4 cut(s) 59, 249, 363, 618
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 5 cut(s) 78, 220, 474, 505, 616
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 3 cut(s) 76, 503, 509
Cfr13I GGNCC 1 cut(s) 58
Cfr42I CCGCGG 1 cut(s) 175
Csp6I GTAC 1 cut(s) 594
CspCI CAANNNNNGTGG 2 cut(s) 466, 501
CviAII CATG 2 cut(s) 223, 268
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 1 cut(s) 429
DpnI GATC 7 cut(s) 23, 38, 87, 186, 440, 462, 608
DpnII GATC 7 cut(s) 21, 36, 85, 184, 438, 460, 606
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 363
Eco47III AGCGCT 2 cut(s) 75, 508
Eco57I CTGAAG 1 cut(s) 523
Eco81I CCTNAGG 1 cut(s) 429
EcoRI GAATTC 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 226, 271
FatI CATG 2 cut(s) 222, 267
FauI CCCGC 1 cut(s) 317
FbaI TGATCA 2 cut(s) 36, 184
FblI GTMKAC 1 cut(s) 389
Fnu4HI GCNGC 2 cut(s) 175, 489
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 175, 489
FspBI CTAG 1 cut(s) 510
GlaI GCGC 3 cut(s) 75, 502, 508
GluI GCNGC 2 cut(s) 175, 489
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 2 cut(s) 77, 510
HaeIII GGCC 4 cut(s) 59, 249, 363, 618
HapII CCGG 1 cut(s) 324
HhaI GCGC 3 cut(s) 76, 503, 509
Hin1II CATG 2 cut(s) 226, 271
Hin6I GCGC 3 cut(s) 74, 501, 507
HinP1I GCGC 3 cut(s) 74, 501, 507
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 2 cut(s) 168, 317
HpaII CCGG 1 cut(s) 324
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 5 cut(s) 66, 89, 546, 554, 580
Hpy8I GTNNAC 1 cut(s) 390
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 517, 598
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 488, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 488, 527
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 2 cut(s) 226, 271
HspAI GCGC 3 cut(s) 74, 501, 507
Ksp22I TGATCA 2 cut(s) 36, 184
KspI CCGCGG 1 cut(s) 175
Kzo9I GATC 7 cut(s) 21, 36, 85, 184, 438, 460, 606
LguI GCTCTTC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 510
MaeII ACGT 1 cut(s) 381
MalI GATC 7 cut(s) 23, 38, 87, 186, 440, 462, 608
MboI GATC 7 cut(s) 21, 36, 85, 184, 438, 460, 606
MboII GAAGA 4 cut(s) 81, 145, 529, 616
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 6 cut(s) 26, 48, 275, 466, 549, 625
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 4 cut(s) 157, 291, 312, 541
MseI TTAA 1 cut(s) 628
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 566
MvnI CGCG 2 cut(s) 174, 458
MwoI GCNNNNNNNGC 3 cut(s) 215, 488, 527
NdeII GATC 7 cut(s) 21, 36, 85, 184, 438, 460, 606
NlaIII CATG 2 cut(s) 226, 271
NlaIV GGNNCC 2 cut(s) 349, 462
PceI AGGCCT 1 cut(s) 363
PciSI GCTCTTC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 168
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 2 cut(s) 176, 490
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp1406I AACGTT 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 2 cut(s) 349, 462
PspPI GGNCC 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 1 cut(s) 460
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
SacII CCGCGG 1 cut(s) 175
SapI GCTCTTC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 628
SatI GCNGC 2 cut(s) 175, 489
Sau3AI GATC 7 cut(s) 21, 36, 85, 184, 438, 460, 606
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 1 cut(s) 134
SetI ASST 6 cut(s) 203, 304, 384, 402, 409, 545
SfaNI GCATC 1 cut(s) 133
Sfr303I CCGCGG 1 cut(s) 175
SgrBI CCGCGG 1 cut(s) 175
Sse9I AATT 6 cut(s) 26, 48, 275, 466, 549, 625
SseBI AGGCCT 1 cut(s) 363
SsiI CCGC 4 cut(s) 172, 174, 310, 458
SspI AATATT 1 cut(s) 294
SspMI CTAG 1 cut(s) 510
StuI AGGCCT 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 517, 598
TaiI ACGT 1 cut(s) 384
TaqI TCGA 1 cut(s) 369
TasI AATT 6 cut(s) 26, 48, 275, 466, 549, 625
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 1 cut(s) 628
Tru9I TTAA 1 cut(s) 628
TscAI CASTG 1 cut(s) 484
TseI GCWGC 1 cut(s) 488
TspRI CASTG 1 cut(s) 484
Van91I CCANNNNNTGG 1 cut(s) 31
XapI RAATTY 1 cut(s) 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 389
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.