Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Reverse (-)

31805738 .. 31806364

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTATGACAATGAGGTTGGTTCAATTACTGATGATGACCATATTAGTTCTTGCTCTGGCCACCTCCAAAAGGGTCTTGGCAAGTGATCCGGATATCCTTTCGGACTTTTTACTCCCACAAAACAGCTCAACAGTTGATGCTAGTTTTTTTACATTCACTGGATTTCGCGGAATATTTGATCAAGCACCCAAAACCTTGAAGACAACAAAAGCCAGCATGGTTGAGTTTCCTGCTCTCAATGGCCAGAGTGTGTCATACGCGGTGCTTCAATTGCCTCCACAGACACTCTTCCCACCTCATACTCGCCCTGATGCAACTGGACTTCTGTTCCTTTTAGATGGTTCCTTGGAAGTAGGCCTAATAGACACAAAAAATAATCTGTATACTCAAAAGCTTCAGGCTGGAGATATGTTTGTATTTCCCAAGGGATTAATACATTATCAGTATAACACTGATTCTCAATTGCCAGCCACTGCCATTGCAGCATTCGGAAGTGCAAGTGCTAGAGCAGTTGCGGTGCCACCTTCTGTTTTTGCTTCAGGTATTGACGATGTCATCCTTGCCAAATCCTTCAAGACAGATGTTGATACTATTAAGAAGATTAAGGCTGGCCTCACTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

208

Amino Acids

22.39

Weight (kDa)

7.92

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	67 - 199	2.6e-27	Cupin
Cupin_2	PF07883	90 - 162	1.5e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	386
AccII	CGCG	2 cut(s)	171, 263
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	3 cut(s)	171, 263, 518
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	2 cut(s)	60, 244
AcuI	CTGAAG	2 cut(s)	383, 525
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	4 cut(s)	26, 202, 272, 577
AluBI	AGCT	3 cut(s)	129, 397, 624
AluI	AGCT	3 cut(s)	129, 397, 624
AlwI	GGATC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	476
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	4 cut(s)	60, 244, 358, 613
ApeKI	GCWGC	1 cut(s)	485
AseI	ATTAAT	1 cut(s)	434
BalI	TGGCCA	2 cut(s)	62, 246
BanI	GGYRCC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	1 cut(s)	335
BclI	TGATCA	1 cut(s)	181
BfaI	CTAG	3 cut(s)	144, 507, 621
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	346, 522
BmsI	GCATC	2 cut(s)	130, 304
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	348, 426
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	166, 325
Bse3DI	GCAATG	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	348, 426
BseGI	GGATG	1 cut(s)	558
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	166, 325
BseXI	GCAGC	1 cut(s)	497
Bsh1236I	CGCG	2 cut(s)	171, 263
BshFI	GGCC	4 cut(s)	62, 246, 360, 615
BshNI	GGYRCC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	4 cut(s)	62, 246, 360, 615
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	88, 181
BspACI	CCGC	3 cut(s)	171, 263, 518
BspANI	GGCC	4 cut(s)	62, 246, 360, 615
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	171, 263
BspLI	GGNNCC	2 cut(s)	346, 522
BspPI	GGATC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	166, 325
BssECI	CCNNGG	2 cut(s)	348, 426
BssMI	GATC	2 cut(s)	88, 181
BssNAI	GTATAC	1 cut(s)	387
BssT1I	CCWWGG	2 cut(s)	348, 426
Bst1107I	GTATAC	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	296
BstC8I	GCNNGC	3 cut(s)	217, 471, 613
BstENI	CCTNNNNNAGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	558
BstFNI	CGCG	2 cut(s)	171, 263
BstKTI	GATC	2 cut(s)	91, 184
BstMBI	GATC	2 cut(s)	88, 181
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 485, 621
BstUI	CGCG	2 cut(s)	171, 263
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	1 cut(s)	209
BstZ17I	GTATAC	1 cut(s)	387
BsuRI	GGCC	4 cut(s)	62, 246, 360, 615
BtsCI	GGATG	1 cut(s)	558
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	3 cut(s)	159, 453, 474
Cac8I	GCNNGC	3 cut(s)	217, 471, 613
CaiI	CAGNNNCTG	1 cut(s)	476
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	1 cut(s)	220
DpnI	GATC	2 cut(s)	90, 183
DpnII	GATC	2 cut(s)	88, 181
EaeI	YGGCCR	2 cut(s)	60, 244
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	348, 426
Eco147I	AGGCCT	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	383, 525
EcoNI	CCTNNNNNAGG	1 cut(s)	70
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	348, 426
ErhI	CCWWGG	2 cut(s)	348, 426
FaeI	CATG	1 cut(s)	223
FaiI	YATR	8 cut(s)	8, 44, 221, 259, 303, 387, 413, 450
FatI	CATG	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	3 cut(s)	144, 507, 621
GluI	GCNGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	4 cut(s)	62, 246, 360, 615
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	2 cut(s)	106, 494
Hpy188III	TCNNGA	2 cut(s)	92, 577
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	2 cut(s)	537, 583
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	317, 485, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 485, 621
Hsp92II	CATG	1 cut(s)	223
Kpn2I	TCCGGA	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	88, 181
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	2 cut(s)	130, 304
MaeI	CTAG	3 cut(s)	144, 507, 621
MalI	GATC	2 cut(s)	90, 183
MboI	GATC	2 cut(s)	88, 181
MboII	GAAGA	3 cut(s)	214, 283, 613
MfeI	CAATTG	2 cut(s)	272, 464
MlsI	TGGCCA	2 cut(s)	62, 246
MluCI	AATT	3 cut(s)	26, 272, 464
MluNI	TGGCCA	2 cut(s)	62, 246
MnlI	CCTC	5 cut(s)	9, 76, 288, 309, 626
Mox20I	TGGCCA	2 cut(s)	62, 246
MroI	TCCGGA	1 cut(s)	91
MscI	TGGCCA	2 cut(s)	62, 246
MseI	TTAA	3 cut(s)	434, 597, 606
Msp20I	TGGCCA	2 cut(s)	62, 246
MspI	CCGG	1 cut(s)	92
MunI	CAATTG	2 cut(s)	272, 464
Mva1269I	GAATGC	1 cut(s)	488
MvnI	CGCG	2 cut(s)	171, 263
MwoI	GCNNNNNNNGC	3 cut(s)	274, 485, 621
NdeII	GATC	2 cut(s)	88, 181
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	346, 522
PceI	AGGCCT	1 cut(s)	360
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	458
PflFI	GACNNNGTC	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	346, 522
PstNI	CAGNNNCTG	1 cut(s)	476
PsyI	GACNNNGTC	1 cut(s)	554
SaqAI	TTAA	3 cut(s)	434, 597, 606
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	2 cut(s)	88, 181
SetI	ASST	9 cut(s)	20, 68, 131, 200, 301, 399, 529, 547, 626
SfaNI	GCATC	2 cut(s)	130, 304
Sse9I	AATT	3 cut(s)	26, 272, 464
SseBI	AGGCCT	1 cut(s)	360
SsiI	CCGC	3 cut(s)	171, 263, 518
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	3 cut(s)	144, 507, 621
StuI	AGGCCT	1 cut(s)	360
StyI	CCWWGG	2 cut(s)	348, 426
TaaI	ACNGT	1 cut(s)	136
TasI	AATT	3 cut(s)	26, 272, 464
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	3 cut(s)	434, 597, 606
Tru9I	TTAA	3 cut(s)	434, 597, 606
TscAI	CASTG	3 cut(s)	166, 460, 481
TseI	GCWGC	1 cut(s)	485
TspRI	CASTG	3 cut(s)	166, 460, 481
Tth111I	GACNNNGTC	1 cut(s)	554
VspI	ATTAAT	1 cut(s)	434
XagI	CCTNNNNNAGG	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	3 cut(s)	144, 507, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.