Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Reverse (-)

34195683 .. 34196153

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCCCCCTCGACGAGAAGCTCAGCCTGGACTGGGTCCAGAAGCTCATGTCCATCTTCGATTGGTCTTCAAGAAATCTAACACCAACCCAATTCCCGGAGGTTCTTCCCGTCCGGGTTTTCGATTCCTTGGTTCTTTGCGCCTCCAAGATTCTCCACAAATAACCAATTGCGTCAAGATCGACGACTGCGGCCCTGACTCCACCGTCGTCGTCGTCGTCGTCGGAGACGTCCACGGCCAGTTGCACGACGTTCTTTTTCTTCTGAAGGATGCTGGGTACCCTTCAGAGAATCGAGTCTTCGTCTTCAATGGGGATTATGTTGACAGAGGAGCTTGGGGTCTTGAGACTTTCTTGATTTTACTGGCTTGGAAAGTGTTGATGCCGAAGTGGAAACCGGGAGGGAGGGAGGGGGAGGGGGAGAGAGGGAGAGGGGGAGGGGGAAGGGTAGTTTTAGAAGAGAAATATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

156

Amino Acids

17.12

Weight (kDa)

8.62

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	71 - 119	2e-09	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AatII	GACGTC	1 cut(s)	231
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AciI	CCGC	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	235
AcuI	CTGAAG	2 cut(s)	267, 284
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	32, 95
AgsI	TTSAA	2 cut(s)	70, 307
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	20, 44, 332
AluI	AGCT	3 cut(s)	20, 44, 332
Alw26I	GTCTC	2 cut(s)	219, 338
AoxI	GGCC	2 cut(s)	190, 235
Asp718I	GGTACC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	35, 191
AsuC2I	CCSGG	3 cut(s)	96, 114, 396
AvaII	GGWCC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	276
BbsI	GAAGAC	3 cut(s)	58, 289, 295
BccI	CCATC	1 cut(s)	60
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	27
BcnI	CCSGG	3 cut(s)	96, 114, 396
BcoDI	GTCTC	2 cut(s)	219, 338
BisI	GCNGC	1 cut(s)	190
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	4 cut(s)	27, 96, 114, 396
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	35, 191
BmiI	GGNNCC	2 cut(s)	36, 278
BmrFI	CCNGG	4 cut(s)	27, 96, 114, 396
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	259, 369
BmuI	ACTGGG	1 cut(s)	41
BpiI	GAAGAC	3 cut(s)	58, 289, 295
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	3 cut(s)	96, 114, 396
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	127, 232
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 95
Bse1I	ACTGG	3 cut(s)	36, 238, 366
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	127, 232
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	2 cut(s)	32, 95
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	3 cut(s)	36, 238, 366
BseRI	GAGGAG	1 cut(s)	342
BseYI	CCCAGC	1 cut(s)	272
BshFI	GGCC	2 cut(s)	192, 237
BshNI	GGYRCC	1 cut(s)	276
BsiSI	CCGG	3 cut(s)	96, 113, 395
BslI	CCNNNNNNNGG	2 cut(s)	32, 95
BsmAI	GTCTC	2 cut(s)	219, 338
BsmBI	CGTCTC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	192, 237
Bsp143I	GATC	1 cut(s)	177
Bsp1720I	GCTNAGC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	2 cut(s)	192, 237
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	36, 278
BspT107I	GGYRCC	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	36, 238, 366
BssECI	CCNNGG	2 cut(s)	127, 232
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	450
BstACI	GRCGYC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	219, 338
BstMBI	GATC	1 cut(s)	177
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	4 cut(s)	25, 94, 112, 394
BstV2I	GAAGAC	3 cut(s)	58, 289, 295
BsuRI	GGCC	2 cut(s)	192, 237
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	35, 191
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	7 cut(s)	20, 25, 44, 192, 237, 332, 365
CviKI_1	RGCY	7 cut(s)	20, 25, 44, 192, 237, 332, 365
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	2 cut(s)	267, 284
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	1 cut(s)	50
FaiI	YATR	3 cut(s)	48, 318, 465
FatI	CATG	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	190
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	190
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	192, 237
HapII	CCGG	3 cut(s)	96, 113, 395
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	5 cut(s)	123, 149, 197, 289, 294
HpaII	CCGG	3 cut(s)	96, 113, 395
Hpy166II	GTNNAC	2 cut(s)	232, 322
Hpy188I	TCNGA	3 cut(s)	224, 264, 286
Hpy188III	TCNNGA	5 cut(s)	38, 70, 175, 341, 352
Hpy8I	GTNNAC	2 cut(s)	232, 322
Hpy99I	CGWCG	9 cut(s)	15, 185, 209, 212, 215, 218, 221, 224, 251
HpyAV	CCTTC	3 cut(s)	259, 291, 435
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	2 cut(s)	228, 249
HpyCH4V	TGCA	1 cut(s)	244
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	2 cut(s)	228, 249
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	329
LweI	GCATC	2 cut(s)	259, 369
MaeII	ACGT	2 cut(s)	228, 249
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	7 cut(s)	47, 58, 96, 251, 289, 295, 467
MfeI	CAATTG	1 cut(s)	166
MluCI	AATT	2 cut(s)	90, 166
MlyI	GAGTC	2 cut(s)	191, 303
MmeI	TCCRAC	1 cut(s)	202
MspI	CCGG	3 cut(s)	96, 113, 395
MspR9I	CCNGG	4 cut(s)	27, 96, 114, 396
MunI	CAATTG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	27
NciI	CCSGG	3 cut(s)	96, 114, 396
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	2 cut(s)	36, 278
PcsI	WCGNNNNNNNCGW	3 cut(s)	213, 216, 225
PfeI	GAWTC	3 cut(s)	123, 149, 289
PflFI	GACNNNGTC	1 cut(s)	33
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	2 cut(s)	191, 302
PpsI	GAGTC	2 cut(s)	191, 302
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	36, 278
PspPI	GGNCC	2 cut(s)	35, 191
PsyI	GACNNNGTC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	35, 191
SchI	GAGTC	2 cut(s)	191, 303
ScrFI	CCNGG	4 cut(s)	27, 96, 114, 396
SetI	ASST	6 cut(s)	22, 46, 103, 231, 252, 334
SfaNI	GCATC	2 cut(s)	259, 369
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	90, 166
SsiI	CCGC	1 cut(s)	189
StyD4I	CCNGG	4 cut(s)	25, 94, 112, 394
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	2 cut(s)	231, 252
TaqI	TCGA	5 cut(s)	10, 58, 121, 180, 292
TasI	AATT	2 cut(s)	90, 166
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	3 cut(s)	123, 149, 289
Tth111I	GACNNNGTC	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	35
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.