Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002122

Physical Location & Seq

Genomic Coordinates Forward (+)

35585468 .. 35588281

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTGGCGCCATTGGCACTGGAACTTGAAGAAGAAAGACGGAATGAGCAAGAACAACTGATACGCGACTATGACCTCTGGGATGACACTGCTGAGTCCAATGAGGTTCTTGCCAAATTGGCTGATAGTGTTAGAGTGGTTGATGCTCTCAGAGACTTGACATATAAGGCTAAAGAAGCAAAACTTATTACACAGTTAGCAGAGATATATGCTATCAATTATGGGCTTTTTAGGAAGGCATATGATGCATCTCTGGATATGAGCAAGATTTTGAATAAATATGAGATTTCCAAGCTTCTTAAGGGACCATATGACATGGAGGGAGCATTAATTATAAAAGCTGGTGGCACAGGCTACCCTGAGGAGTTTATTGTGTGCACAATTCTTGGAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009894 GO:0009987 GO:0010468 GO:0010608 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031329 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043565 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

132

Amino Acids

14.99

Weight (kDa)

4.69

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57190
fragaria_vesca	FvH4_4g12020 FvH4_4g12020
prunus_persica	Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1 Prupe.7G049700_v2.0.a1
pyrus_communis	pycom12g07340
rosa_chinensis	RchiOBHm_Chr1g0343471 RchiOBHm_Chr2g0168541 RchiOBHm_Chr4g0409641 RchiOBHm_Chr5g0045081 RchiOBHm_Chr5g0071051 RchiOBHm_Chr6g0273161 RchiOBHm_Chr7g0240011
rosa_laevigata	RLG00000008537
rosa_multiflora	Rmu_sc0000652.1_g000001 Rmu_sc0002310.1_g000022 Rmu_sc0015305.1_g000010 Rmu_sc0015338.1_g000005 Rmu_sc0018973.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354180
rosa_rugosa	Rorug04G0095700 Rorug04G0095800 Rorug05G0498600
rosa_samantha	Rh2BG617100 Rh2CG585200 Rh3DG274500 Rh4AG157300 Rh4BG156900 Rh4CG024300 Rh4CG167500 Rh4DG151200 Rh4DG161700 Rh5BG221000 Rh5BG274800 Rh5BG309900 Rh5CG332800 Rh5DG283000 Rh5DG320400
rosa_wichuraiana	Rw0G003500 Rw2G050080 Rw3G022130 Rw4G012870 Rw4G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	8
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	29, 274
AluBI	AGCT	2 cut(s)	295, 341
AluI	AGCT	2 cut(s)	295, 341
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	147
Alw44I	GTGCAC	1 cut(s)	376
ApaLI	GTGCAC	1 cut(s)	376
AseI	ATTAAT	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	305
AxyI	CCTNAGG	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	2 cut(s)	9, 306
BmsI	GCATC	3 cut(s)	133, 235, 257
BsaHI	GRCGYC	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	24
Bse21I	CCTNAGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	88
BseMII	CTCAG	3 cut(s)	84, 163, 351
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	380
BspCNI	CTCAG	3 cut(s)	85, 162, 352
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	9, 306
BspT107I	GGYRCC	1 cut(s)	7
BspTI	CTTAAG	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	8
BstAFI	CTTAAG	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstDEI	CTNAG	3 cut(s)	93, 149, 360
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 119, 176, 245
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	17, 87
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	305
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	6 cut(s)	122, 170, 226, 295, 341, 354
CviKI_1	RGCY	6 cut(s)	122, 170, 226, 295, 341, 354
DdeI	CTNAG	3 cut(s)	93, 149, 360
DinI	GGCGCC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	305
Eco81I	CCTNAGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	250
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
FaeI	CATG	1 cut(s)	319
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	1 cut(s)	315
FauNDI	CATATG	2 cut(s)	241, 310
FokI	GGATG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	11
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	248, 378
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 119, 176, 245
HpyF3I	CTNAG	3 cut(s)	93, 149, 360
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	1 cut(s)	8
KasI	GGCGCC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	6 cut(s)	5, 64, 239, 327, 336, 372
LweI	GCATC	3 cut(s)	133, 235, 257
MboII	GAAGA	2 cut(s)	41, 44
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	5 cut(s)	116, 217, 330, 381, 394
Mly113I	GGCGCC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	4 cut(s)	86, 97, 313, 355
Mph1103I	ATGCAT	1 cut(s)	250
MseI	TTAA	2 cut(s)	300, 329
MspCI	CTTAAG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	4 cut(s)	14, 119, 176, 245
NarI	GGCGCC	1 cut(s)	8
NdeI	CATATG	2 cut(s)	241, 310
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	2 cut(s)	9, 306
NsiI	ATGCAT	1 cut(s)	250
PleI	GAGTC	1 cut(s)	103
PluTI	GGCGCC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	103
PshBI	ATTAAT	1 cut(s)	329
PsiI	TTATAA	1 cut(s)	335
PspN4I	GGNNCC	2 cut(s)	9, 306
PspPI	GGNCC	1 cut(s)	305
PsrI	GAACNNNNNNTAC	2 cut(s)	45, 77
SaqAI	TTAA	2 cut(s)	300, 329
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	4 cut(s)	78, 108, 297, 343
SfaNI	GCATC	3 cut(s)	133, 235, 257
SfoI	GGCGCC	1 cut(s)	9
SinI	GGWCC	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	5 cut(s)	116, 217, 330, 381, 394
SspDI	GGCGCC	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	195
TasI	AATT	5 cut(s)	116, 217, 330, 381, 394
Tru1I	TTAA	2 cut(s)	300, 329
Tru9I	TTAA	2 cut(s)	300, 329
TscAI	CASTG	2 cut(s)	24, 94
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	24, 94
Vha464I	CTTAAG	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.