RchiOBHm_Chr1g0350611

Protein cornichon homolog 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002446
Physical Location & Seq
Forward (+)
43745303 .. 43748395
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
ATGATGGAGATGCTATGGACATGGCTCTTGAGTTTCTTCTTCATCTTAACTCTCTTATGCCTTCTGGGTTATCAGCTTGTGTGCTTAGTGGACCTCGAATTTGATTACATCAATCCATATGATTCATCATCTCGGATAAACAATACTGTTTTGCCAGAGTTTATAGTTCAAGGAGTTCTGTGCGTCATTCTTCTTATAACGAGACACTGGTTTATGCTTCTATTGGCTCTTCCGCACCTATATTATAACGTCAATTCGTACATGAAGGGGCGGCACTTGGTAGATGTGACTGAGATCTACAACCAGCTGAGCTGGGAGAAAAAACAACGGTTCTTCAAGATTGGCTATCTGTTGGTCCTGTTCATCCTCTCTCTATTCTGGTTGCTTTGGAGCATCGGAGATGAATATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

137

Amino Acids

16.51

Weight (kDa)

5.21

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 6 - 126 6.7e-45 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 197, 246
AciI CCGC 2 cut(s) 233, 271
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 2 cut(s) 170, 337
AluBI AGCT 3 cut(s) 76, 307, 312
AluI AGCT 3 cut(s) 76, 307, 312
Alw26I GTCTC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspS9I GGNCC 2 cut(s) 91, 355
AvaII GGWCC 2 cut(s) 91, 355
BcoDI GTCTC 1 cut(s) 196
BglII AGATCT 1 cut(s) 294
BisI GCNGC 1 cut(s) 272
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 273
Bme18I GGWCC 2 cut(s) 91, 355
BmgT120I GGNCC 2 cut(s) 91, 355
BmsI GCATC 1 cut(s) 402
Bpu1102I GCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 212
BseGI GGATG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 282, 299
BseNI ACTGG 1 cut(s) 212
BseYI CCCAGC 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 294
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 2 cut(s) 233, 271
BspCNI CTCAG 2 cut(s) 283, 300
BspQI GCTCTTC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 212
BssMI GATC 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 148, 330
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 3 cut(s) 85, 291, 308
BstF5I GGATG 1 cut(s) 363
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BtsCI GGATG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 91, 355
CseI GACGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 21, 262
CviJI RGCY 6 cut(s) 25, 76, 227, 307, 312, 345
CviKI_1 RGCY 6 cut(s) 25, 76, 227, 307, 312, 345
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 3 cut(s) 85, 291, 308
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 91, 355
FaeI CATG 2 cut(s) 24, 265
FatI CATG 2 cut(s) 20, 261
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 272
GsaI CCCAGC 1 cut(s) 316
HgaI GACGC 1 cut(s) 172
Hin1II CATG 2 cut(s) 24, 265
HinfI GANTC 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 135, 398
Hpy188III TCNNGA 2 cut(s) 28, 337
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 71, 259
HpyCH4III ACNGT 2 cut(s) 148, 330
HpyCH4IV ACGT 1 cut(s) 249
HpyF3I CTNAG 3 cut(s) 85, 291, 308
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 2 cut(s) 24, 265
Kzo9I GATC 1 cut(s) 294
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 390
LpnPI CCDG 7 cut(s) 50, 168, 193, 298, 317, 364, 371
LweI GCATC 1 cut(s) 402
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 5 cut(s) 28, 31, 182, 221, 325
MflI RGATCY 1 cut(s) 294
MluCI AATT 2 cut(s) 98, 253
MnlI CCTC 2 cut(s) 104, 377
MseI TTAA 2 cut(s) 47, 412
MspA1I CMGCKG 1 cut(s) 307
NdeI CATATG 1 cut(s) 118
NdeII GATC 1 cut(s) 294
NlaIII CATG 2 cut(s) 24, 265
NmuCI GTSAC 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 273
PsiI TTATAA 2 cut(s) 197, 246
PspFI CCCAGC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 91, 355
PsuI RGATCY 1 cut(s) 294
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 47, 412
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 2 cut(s) 91, 355
SetI ASST 6 cut(s) 78, 96, 240, 252, 309, 314
SfaNI GCATC 1 cut(s) 402
SinI GGWCC 2 cut(s) 91, 355
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 2 cut(s) 98, 253
SsiI CCGC 2 cut(s) 233, 271
TaaI ACNGT 2 cut(s) 148, 330
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 98, 253
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 47, 412
Tru9I TTAA 2 cut(s) 47, 412
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 4 cut(s) 31, 114, 278, 352
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 2 cut(s) 91, 355
XapI RAATTY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.