Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

52520905 .. 52521639

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCCAGGCATGACAGGATATGATTTGCTCAGGAAAATCAAGGAATCTTCTTTACTCAAGAACATACCGGTTGTGATAATGTCATCTGAGAATGTGCCTTCAAGAATAAATAGGTGTTTGGAACAAGGGGCAGAAGAGTTTTTCTTAATGCCAGTAAGATTGTCAGACTTGAATAGGCTTAGGCCTCATATTATAAAAACCAAGTCTAAGGATCAAAACCAAGAAAAGCCAAGAACTCATGAAGAAGAAGAAGCAAGTCAAAAATTGGAAATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

92

Amino Acids

10.67

Weight (kDa)

7.89

Isoelectric Point (pI)

78.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	1 - 57	2.4e-08	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AclWI	GGATC	1 cut(s)	219
AgeI	ACCGGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	102, 172
AjnI	CCWGG	1 cut(s)	4
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	1 cut(s)	182
AsiGI	ACCGGT	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	6
Bpu10I	CCTNAGC	2 cut(s)	29, 179
BpuEI	CTTGAG	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	6
BseMII	CTCAG	2 cut(s)	43, 78
BseNI	ACTGG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	184
BshTI	ACCGGT	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	68
BsnI	GGCC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	2 cut(s)	42, 79
BspHI	TCATGA	1 cut(s)	238
BspPI	GGATC	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	67
BssMI	GATC	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	129
BstDEI	CTNAG	4 cut(s)	29, 87, 179, 207
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	184
CciI	TCATGA	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	67
CspAI	ACCGGT	1 cut(s)	67
CviAII	CATG	2 cut(s)	10, 239
CviJI	RGCY	3 cut(s)	178, 184, 229
CviKI_1	RGCY	3 cut(s)	178, 184, 229
DdeI	CTNAG	4 cut(s)	29, 87, 179, 207
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	4
FaeI	CATG	2 cut(s)	13, 242
FaiI	YATR	7 cut(s)	11, 21, 65, 189, 194, 240, 277
FatI	CATG	2 cut(s)	9, 238
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	2 cut(s)	13, 242
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	88, 166
Hpy188III	TCNNGA	4 cut(s)	31, 58, 102, 239
HpyAV	CCTTC	1 cut(s)	108
HpyF3I	CTNAG	4 cut(s)	29, 87, 179, 207
Hsp92II	CATG	2 cut(s)	13, 242
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	4 cut(s)	16, 18, 81, 165
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	5 cut(s)	39, 146, 254, 257, 260
MluCI	AATT	1 cut(s)	263
MnlI	CCTC	1 cut(s)	195
MseI	TTAA	1 cut(s)	146
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	13, 242
PagI	TCATGA	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	44
PinAI	ACCGGT	1 cut(s)	67
PsiI	TTATAA	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	146
Sau3AI	GATC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	263
SseBI	AGGCCT	1 cut(s)	184
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	4
TasI	AATT	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.