RchiOBHm_Chr1g0379631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004870
Physical Location & Seq
Forward (+)
65656025 .. 65656634
610 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGAACTTAAAAGAGCTCGAGGAAAGCTTCAAGGAACTGAGAATCATCAACGAAAAGCAAGAAAAACGTGTATGGTACCACGAGACGAGAGCTCAGAACTTAACAATCGCTTATGTTCTGCTGCAAGGCTTGTTTTCCATAGGGATTGTACTTTCCTCGTCGTCACCACCGTCTAGTACTCCCAGAAATCAATGGTGGGTTCCCTTCTCCATGATACTAGTTTCATCTGTAATCTTCTTCATGGCTTTCCTAGATGCTGTGACTATGTTTTATAGGACCCAGTACCATCTAGATATGAACTATATGGAGCAGGACCTCATATTCAAGAAGATACAAGAAGCCAAACACCCACCTGCAGCTAGTTATAAGCTCAGTCATTCCATCAAGATAGAAAAGTGCAGTGGTCATGAACAAGAAGTGCCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.63

Weight (kDa)

6.97

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 1 cut(s) 361
Acc65I GGTACC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 75
AfaI GTAC 4 cut(s) 77, 150, 178, 284
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 2 cut(s) 31, 325
AhlI ACTAGT 1 cut(s) 217
AluBI AGCT 5 cut(s) 16, 27, 92, 359, 370
AluI AGCT 5 cut(s) 16, 27, 92, 359, 370
Alw21I GWGCWC 2 cut(s) 18, 94
Alw26I GTCTC 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 121, 356
Asp718I GGTACC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 276, 313
AsuHPI GGTGA 1 cut(s) 156
AvaI CYCGRG 1 cut(s) 17
AvaII GGWCC 2 cut(s) 276, 313
BanI GGYRCC 1 cut(s) 75
BanII GRGCYC 2 cut(s) 18, 94
BauI CACGAG 1 cut(s) 80
Bbv12I GWGCWC 2 cut(s) 18, 94
BbvI GCAGC 2 cut(s) 108, 368
BccI CCATC 2 cut(s) 294, 389
BcoDI GTCTC 1 cut(s) 77
BcuI ACTAGT 1 cut(s) 217
BfaI CTAG 5 cut(s) 174, 218, 251, 290, 360
BfmI CTRYAG 1 cut(s) 354
BfuAI ACCTGC 1 cut(s) 361
BisI GCNGC 2 cut(s) 122, 357
BlsI GCNGC 2 cut(s) 123, 358
BmcAI AGTACT 1 cut(s) 178
Bme18I GGWCC 2 cut(s) 276, 313
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 276, 313
BmiI GGNNCC 3 cut(s) 77, 201, 278
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 280
BseMII CTCAG 3 cut(s) 29, 107, 385
BseNI ACTGG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 108, 368
BsgI GTGCAG 1 cut(s) 418
BshNI GGYRCC 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 18, 94
BsiHKCI CYCGRG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 18, 94
BspCNI CTCAG 3 cut(s) 30, 106, 384
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 3 cut(s) 77, 201, 278
BspMAI CTGCAG 1 cut(s) 358
BspMI ACCTGC 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 280
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 38, 93, 371
BstMAI GTCTC 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 108, 368
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 406
BveI ACCTGC 1 cut(s) 361
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 2 cut(s) 276, 313
Csp6I GTAC 4 cut(s) 76, 149, 177, 283
CviAII CATG 3 cut(s) 211, 241, 407
CviJI RGCY 8 cut(s) 16, 27, 92, 129, 245, 341, 359, 370
CviKI_1 RGCY 8 cut(s) 16, 27, 92, 129, 245, 341, 359, 370
CviQI GTAC 4 cut(s) 76, 149, 177, 283
DdeI CTNAG 3 cut(s) 38, 93, 371
Ecl136II GAGCTC 2 cut(s) 16, 92
Eco24I GRGCYC 2 cut(s) 18, 94
Eco47I GGWCC 2 cut(s) 276, 313
Eco53kI GAGCTC 2 cut(s) 16, 92
Eco88I CYCGRG 1 cut(s) 17
EcoICRI GAGCTC 2 cut(s) 16, 92
EcoO109I RGGNCCY 2 cut(s) 276, 313
EcoT38I GRGCYC 2 cut(s) 18, 94
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 3 cut(s) 214, 244, 410
FatI CATG 3 cut(s) 210, 240, 406
Fnu4HI GCNGC 2 cut(s) 122, 357
FriOI GRGCYC 2 cut(s) 18, 94
Fsp4HI GCNGC 2 cut(s) 122, 357
FspBI CTAG 5 cut(s) 174, 218, 251, 290, 360
GluI GCNGC 2 cut(s) 122, 357
Hin1II CATG 3 cut(s) 214, 244, 410
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 1 cut(s) 42
HphI GGTGA 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 4 cut(s) 290, 325, 385, 407
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 124, 356, 399
HpyF3I CTNAG 3 cut(s) 38, 93, 371
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 3 cut(s) 214, 244, 410
KpnI GGTACC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 4 cut(s) 196, 293, 296, 366
Lsp1109I GCAGC 2 cut(s) 108, 368
LweI GCATC 1 cut(s) 244
MaeI CTAG 5 cut(s) 174, 218, 251, 290, 360
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 2 cut(s) 162, 259
MboII GAAGA 3 cut(s) 226, 229, 340
MhlI GDGCHC 2 cut(s) 18, 94
MnlI CCTC 3 cut(s) 13, 166, 326
MseI TTAA 2 cut(s) 8, 101
NlaIII CATG 3 cut(s) 214, 244, 410
NlaIV GGNNCC 3 cut(s) 77, 201, 278
NmuCI GTSAC 2 cut(s) 162, 259
PaeR7I CTCGAG 1 cut(s) 17
PagI TCATGA 1 cut(s) 406
PaqCI CACCTGC 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 123, 358
PpuMI RGGWCCY 2 cut(s) 276, 313
PsiI TTATAA 1 cut(s) 366
Psp124BI GAGCTC 2 cut(s) 18, 94
Psp5II RGGWCCY 2 cut(s) 276, 313
PspN4I GGNNCC 3 cut(s) 77, 201, 278
PspPI GGNCC 2 cut(s) 276, 313
PspPPI RGGWCCY 2 cut(s) 276, 313
PspXI VCTCGAGB 1 cut(s) 17
PstI CTGCAG 1 cut(s) 358
RsaI GTAC 4 cut(s) 77, 150, 178, 284
RsaNI GTAC 4 cut(s) 76, 149, 177, 283
SacI GAGCTC 2 cut(s) 18, 94
SaqAI TTAA 2 cut(s) 8, 101
SatI GCNGC 2 cut(s) 122, 357
Sau96I GGNCC 2 cut(s) 276, 313
ScaI AGTACT 1 cut(s) 178
SduI GDGCHC 2 cut(s) 18, 94
SetI ASST 8 cut(s) 18, 29, 70, 94, 318, 355, 361, 372
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 354
Sfr274I CTCGAG 1 cut(s) 17
SinI GGWCC 2 cut(s) 276, 313
SlaI CTCGAG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SpeI ACTAGT 1 cut(s) 217
SspMI CTAG 5 cut(s) 174, 218, 251, 290, 360
SstI GAGCTC 2 cut(s) 18, 94
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 18
TatI WGTACW 2 cut(s) 148, 176
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 2 cut(s) 8, 101
Tru9I TTAA 2 cut(s) 8, 101
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 2 cut(s) 162, 259
TseI GCWGC 2 cut(s) 121, 356
Tsp45I GTSAC 2 cut(s) 162, 259
TspDTI ATGAA 5 cut(s) 17, 213, 229, 311, 423
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 2 cut(s) 276, 313
XbaI TCTAGA 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 17
XspI CTAG 5 cut(s) 174, 218, 251, 290, 360
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.