RchiOBHm_Chr1g0325521

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
13523770 .. 13524138
369 bp
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UTR
Exon/CDS
Intron
PRQ55524

Sequence Viewer

Length: 174 bp
ATGTTATTTCACATATTAATGCTGCAATATTTGTTGATTGTTTACTTGAGTTATAAGAATTGTAATTTAATCAATCAACAGTTCTTTCTTGTTTACTCACGAGCTTTGCAAAAAGCTTACCGGGTTTTGTGTTGTTGCAATCCCGGTACACTATTCAAATTGTGTAGCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.71

Weight (kDa)

9.17

Isoelectric Point (pI)

21.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AciI CCGC 1 cut(s) 168
AfaI GTAC 1 cut(s) 148
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 2 cut(s) 104, 116
AluI AGCT 2 cut(s) 104, 116
ApeKI GCWGC 1 cut(s) 22
AseI ATTAAT 1 cut(s) 17
AsuC2I CCSGG 2 cut(s) 122, 144
BauI CACGAG 1 cut(s) 99
BbvI GCAGC 1 cut(s) 9
BcnI CCSGG 2 cut(s) 122, 144
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 2 cut(s) 122, 144
BmrFI CCNGG 2 cut(s) 122, 144
BpuEI CTTGAG 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 122, 144
BseXI GCAGC 1 cut(s) 9
BsiSI CCGG 2 cut(s) 121, 144
BspACI CCGC 1 cut(s) 168
BssSI CACGAG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 120, 142
BstV1I GCAGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 147
CviJI RGCY 2 cut(s) 104, 116
CviKI_1 RGCY 2 cut(s) 104, 116
CviQI GTAC 1 cut(s) 147
FaiI YATR 2 cut(s) 14, 54
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspEI CC 8 cut(s) 106, 107, 129, 134, 153, 154, 156, 157
GluI GCNGC 1 cut(s) 23
HapII CCGG 2 cut(s) 121, 144
HindIII AAGCTT 1 cut(s) 114
HpaII CCGG 2 cut(s) 121, 144
Hpy166II GTNNAC 3 cut(s) 43, 94, 149
Hpy188III TCNNGA 1 cut(s) 99
Hpy8I GTNNAC 3 cut(s) 43, 94, 149
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 25, 109, 138
LpnPI CCDG 2 cut(s) 134, 157
Lsp1109I GCAGC 1 cut(s) 9
MluCI AATT 3 cut(s) 58, 64, 158
MseI TTAA 2 cut(s) 17, 68
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 2 cut(s) 121, 144
MspR9I CCNGG 2 cut(s) 122, 144
NciI CCSGG 2 cut(s) 122, 144
PkrI GCNGC 1 cut(s) 24
PshBI ATTAAT 1 cut(s) 17
PsiI TTATAA 1 cut(s) 54
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 17, 68
SatI GCNGC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 122, 144
SetI ASST 2 cut(s) 106, 118
SgeI CNNG 8 cut(s) 58, 101, 111, 113, 133, 134, 155, 156
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 3 cut(s) 58, 64, 158
SsiI CCGC 1 cut(s) 168
SspI AATATT 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 120, 142
TaaI ACNGT 1 cut(s) 81
TasI AATT 3 cut(s) 58, 64, 158
Tru1I TTAA 2 cut(s) 17, 68
Tru9I TTAA 2 cut(s) 17, 68
TseI GCWGC 1 cut(s) 22
VspI ATTAAT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.