RchiOBHm_Chr6g0251371

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
6616267 .. 6617595
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22536

Sequence Viewer

Length: 393 bp
ATGATATATTTTGAATATGTGAAGGTGTTAGTGAAATTGATCAAATATCTATCCATGATATATTTTGAATATGTGAAGGTGTTTGTGAAAAGAAAATCAAGCATGTGTTGCTTTAATGTTATTTCACATATTAATGTTGCAATATTTGTTGGTTGTGATCAAGCATGTATTACTTTAATGTTATTTCACATATTAATGCTGCAATATTTGTTGATTGTTTACTTGAGTTATAAGAATTGTAACATAATAAATCAACAGTTCTTTCTTGTTTACTCACGAGCTGTCAAAAGCTTACCGGGTTTTGTGTTGTTGCAATTCCCGGTACACTATTCAAATTGTGCAGCGGGTAATCTCACAGGTCAGGAGAATCAGGGCAGTGATCGTGCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.05

Weight (kDa)

9.05

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AciI CCGC 2 cut(s) 344, 386
AfaI GTAC 1 cut(s) 324
AgsI TTSAA 3 cut(s) 14, 68, 333
AluBI AGCT 2 cut(s) 281, 291
AluI AGCT 2 cut(s) 281, 291
ApeKI GCWGC 2 cut(s) 199, 341
AseI ATTAAT 2 cut(s) 132, 194
AsuC2I CCSGG 2 cut(s) 297, 320
BauI CACGAG 1 cut(s) 276
BbvI GCAGC 2 cut(s) 186, 353
BclI TGATCA 2 cut(s) 39, 157
BcnI CCSGG 2 cut(s) 297, 320
BisI GCNGC 2 cut(s) 200, 342
BlsI GCNGC 2 cut(s) 201, 343
Bme1390I CCNGG 2 cut(s) 297, 320
BmrFI CCNGG 2 cut(s) 297, 320
BpuEI CTTGAG 1 cut(s) 244
BpuMI CCSGG 2 cut(s) 297, 320
BseXI GCAGC 2 cut(s) 186, 353
BsgI GTGCAG 1 cut(s) 360
BsiSI CCGG 2 cut(s) 296, 320
Bsp143I GATC 3 cut(s) 39, 157, 379
BspACI CCGC 2 cut(s) 344, 386
BssMI GATC 3 cut(s) 39, 157, 379
BssSI CACGAG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 108
BstKTI GATC 3 cut(s) 42, 160, 382
BstMBI GATC 3 cut(s) 39, 157, 379
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNSI RCATGY 2 cut(s) 106, 168
BstSCI CCNGG 2 cut(s) 295, 318
BstV1I GCAGC 2 cut(s) 186, 353
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 382
Csp6I GTAC 1 cut(s) 323
CviAII CATG 3 cut(s) 55, 103, 165
CviJI RGCY 2 cut(s) 281, 291
CviKI_1 RGCY 2 cut(s) 281, 291
CviQI GTAC 1 cut(s) 323
DpnI GATC 3 cut(s) 41, 159, 381
DpnII GATC 3 cut(s) 39, 157, 379
FaeI CATG 3 cut(s) 58, 106, 168
FatI CATG 3 cut(s) 54, 102, 164
FauI CCCGC 1 cut(s) 337
FbaI TGATCA 2 cut(s) 39, 157
Fnu4HI GCNGC 2 cut(s) 200, 342
Fsp4HI GCNGC 2 cut(s) 200, 342
GluI GCNGC 2 cut(s) 200, 342
HapII CCGG 2 cut(s) 296, 320
Hin1II CATG 3 cut(s) 58, 106, 168
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 1 cut(s) 367
HpaII CCGG 2 cut(s) 296, 320
Hpy166II GTNNAC 3 cut(s) 220, 271, 325
Hpy188III TCNNGA 2 cut(s) 276, 362
Hpy8I GTNNAC 3 cut(s) 220, 271, 325
HpyAV CCTTC 2 cut(s) 16, 70
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 4 cut(s) 140, 202, 313, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
Hsp92II CATG 3 cut(s) 58, 106, 168
Ksp22I TGATCA 2 cut(s) 39, 157
Kzo9I GATC 3 cut(s) 39, 157, 379
LpnPI CCDG 5 cut(s) 309, 333, 342, 347, 356
Lsp1109I GCAGC 2 cut(s) 186, 353
MaeIII GTNAC 1 cut(s) 239
MalI GATC 3 cut(s) 41, 159, 381
MboI GATC 3 cut(s) 39, 157, 379
MluCI AATT 4 cut(s) 35, 235, 314, 334
MseI TTAA 4 cut(s) 114, 132, 176, 194
MslI CAYNNNNRTG 2 cut(s) 132, 194
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 2 cut(s) 296, 320
MspR9I CCNGG 2 cut(s) 297, 320
MwoI GCNNNNNNNGC 1 cut(s) 108
NciI CCSGG 2 cut(s) 297, 320
NdeII GATC 3 cut(s) 39, 157, 379
NlaIII CATG 3 cut(s) 58, 106, 168
NspI RCATGY 2 cut(s) 106, 168
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 2 cut(s) 201, 343
PshBI ATTAAT 2 cut(s) 132, 194
PsiI TTATAA 1 cut(s) 231
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 2 cut(s) 132, 194
SaqAI TTAA 4 cut(s) 114, 132, 176, 194
SatI GCNGC 2 cut(s) 200, 342
Sau3AI GATC 3 cut(s) 39, 157, 379
ScrFI CCNGG 2 cut(s) 297, 320
SetI ASST 5 cut(s) 27, 81, 283, 293, 361
SmiMI CAYNNNNRTG 2 cut(s) 132, 194
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 4 cut(s) 35, 235, 314, 334
SsiI CCGC 2 cut(s) 344, 386
SspI AATATT 2 cut(s) 144, 206
StyD4I CCNGG 2 cut(s) 295, 318
TaaI ACNGT 1 cut(s) 258
TasI AATT 4 cut(s) 35, 235, 314, 334
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 4 cut(s) 114, 132, 176, 194
Tru9I TTAA 4 cut(s) 114, 132, 176, 194
TscAI CASTG 1 cut(s) 382
TseI GCWGC 2 cut(s) 199, 341
TspRI CASTG 1 cut(s) 382
VspI ATTAAT 2 cut(s) 132, 194
XceI RCATGY 2 cut(s) 106, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.