RchiOBHm_Chr4g0418031

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
43474365 .. 43475460
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38806

Sequence Viewer

Length: 393 bp
ATGATATATTTTGAATATGTGAAGGTGTTAGTGAAATTGATCAAATATCTATCTATGATATATTTTGAATATGTGAAGGTGTTTGTGAAAAGAAAATCAAGCATGCATTACTTTAATGTTATTTCACATATTAATGTTGCAATATTTGTTGGTTGTGATCAAGCATGTGTTGCTCAAATGTTATTTCACATATTAATGCTGCAATATTTGTTGATTGTTTACTTGAGTTATAAGAATTGTAACATAATAAATCAACAGTTCTTTCTTGTTTACTCACGAGCTGTCAAAAGCTTACCGGGTTTTGTGTTGTTGCAATTCCCGGTACACTATTCAAATTGTGTAGCGGGTAATCTCACAGGTCAGGAGAATCAGGGCAGTGATCGTGCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.14

Weight (kDa)

9.19

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AciI CCGC 2 cut(s) 344, 386
AfaI GTAC 1 cut(s) 324
AgsI TTSAA 3 cut(s) 14, 68, 333
AluBI AGCT 2 cut(s) 281, 291
AluI AGCT 2 cut(s) 281, 291
ApeKI GCWGC 1 cut(s) 199
AseI ATTAAT 2 cut(s) 132, 194
AsuC2I CCSGG 2 cut(s) 297, 320
BauI CACGAG 1 cut(s) 276
BbvI GCAGC 1 cut(s) 186
BclI TGATCA 2 cut(s) 39, 157
BcnI CCSGG 2 cut(s) 297, 320
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 297, 320
BmrFI CCNGG 2 cut(s) 297, 320
BpuEI CTTGAG 1 cut(s) 244
BpuMI CCSGG 2 cut(s) 297, 320
BseXI GCAGC 1 cut(s) 186
BsiSI CCGG 2 cut(s) 296, 320
Bsp143I GATC 3 cut(s) 39, 157, 379
BspACI CCGC 2 cut(s) 344, 386
BssMI GATC 3 cut(s) 39, 157, 379
BssSI CACGAG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 42, 160, 382
BstMBI GATC 3 cut(s) 39, 157, 379
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 2 cut(s) 106, 168
BstSCI CCNGG 2 cut(s) 295, 318
BstV1I GCAGC 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 323
CviAII CATG 2 cut(s) 103, 165
CviJI RGCY 2 cut(s) 281, 291
CviKI_1 RGCY 2 cut(s) 281, 291
CviQI GTAC 1 cut(s) 323
DpnI GATC 3 cut(s) 41, 159, 381
DpnII GATC 3 cut(s) 39, 157, 379
EcoT22I ATGCAT 1 cut(s) 108
FaeI CATG 2 cut(s) 106, 168
FatI CATG 2 cut(s) 102, 164
FauI CCCGC 1 cut(s) 337
FbaI TGATCA 2 cut(s) 39, 157
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 200
HapII CCGG 2 cut(s) 296, 320
Hin1II CATG 2 cut(s) 106, 168
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 1 cut(s) 367
HpaII CCGG 2 cut(s) 296, 320
Hpy166II GTNNAC 3 cut(s) 220, 271, 325
Hpy188III TCNNGA 2 cut(s) 276, 362
Hpy8I GTNNAC 3 cut(s) 220, 271, 325
HpyAV CCTTC 2 cut(s) 16, 70
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 4 cut(s) 106, 140, 202, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
Hsp92II CATG 2 cut(s) 106, 168
Ksp22I TGATCA 2 cut(s) 39, 157
Kzo9I GATC 3 cut(s) 39, 157, 379
LpnPI CCDG 5 cut(s) 309, 333, 342, 347, 356
Lsp1109I GCAGC 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 239
MalI GATC 3 cut(s) 41, 159, 381
MboI GATC 3 cut(s) 39, 157, 379
MluCI AATT 4 cut(s) 35, 235, 314, 334
Mph1103I ATGCAT 1 cut(s) 108
MseI TTAA 3 cut(s) 114, 132, 194
MslI CAYNNNNRTG 2 cut(s) 132, 194
MspI CCGG 2 cut(s) 296, 320
MspR9I CCNGG 2 cut(s) 297, 320
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 2 cut(s) 297, 320
NdeII GATC 3 cut(s) 39, 157, 379
NlaIII CATG 2 cut(s) 106, 168
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 2 cut(s) 106, 168
PaeI GCATGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 201
PshBI ATTAAT 2 cut(s) 132, 194
PsiI TTATAA 1 cut(s) 231
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 2 cut(s) 132, 194
SaqAI TTAA 3 cut(s) 114, 132, 194
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 3 cut(s) 39, 157, 379
ScrFI CCNGG 2 cut(s) 297, 320
SetI ASST 5 cut(s) 27, 81, 283, 293, 361
SmiMI CAYNNNNRTG 2 cut(s) 132, 194
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SphI GCATGC 1 cut(s) 106
Sse9I AATT 4 cut(s) 35, 235, 314, 334
SsiI CCGC 2 cut(s) 344, 386
SspI AATATT 2 cut(s) 144, 206
StyD4I CCNGG 2 cut(s) 295, 318
TaaI ACNGT 1 cut(s) 258
TasI AATT 4 cut(s) 35, 235, 314, 334
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 3 cut(s) 114, 132, 194
Tru9I TTAA 3 cut(s) 114, 132, 194
TscAI CASTG 1 cut(s) 382
TseI GCWGC 1 cut(s) 199
TspRI CASTG 1 cut(s) 382
VspI ATTAAT 2 cut(s) 132, 194
XceI RCATGY 2 cut(s) 106, 168
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.