RchiOBHm_Chr2g0166631

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
81259110 .. 81259960
851 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53451

Sequence Viewer

Length: 297 bp
ATGTTATTTCACATATTAATGTTGCAATATTTGTTGGTTGAGTTTTTAAAAGAGAGTATCCAAAAATACGTACTTTTATGTTTCTGTGATTTTTGGAGTTACCTTGTGAGTGTGTTGATTGTTTACTTGAGTTATAATAATTGTAACATAATAAATCAACAGTTCTTTCTTATTTACTCACGAGCTGTCAAAAGCTTACCGGGTTTTGTGTTGTTCCAATTCCCGGTACACTATTCAAATTGTGTAGCGGGTAATCTCACAGGTCAGGAGAATCAGGGCAGTGATCGTGCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.43

Weight (kDa)

6.69

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AciI CCGC 2 cut(s) 248, 290
AfaI GTAC 2 cut(s) 72, 228
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 1 cut(s) 237
AluBI AGCT 2 cut(s) 185, 195
AluI AGCT 2 cut(s) 185, 195
AseI ATTAAT 1 cut(s) 17
AsuC2I CCSGG 2 cut(s) 201, 224
BauI CACGAG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 68
BcnI CCSGG 2 cut(s) 201, 224
BfuI GTATCC 1 cut(s) 68
Bme1390I CCNGG 2 cut(s) 201, 224
BmrFI CCNGG 2 cut(s) 201, 224
BpuEI CTTGAG 1 cut(s) 148
BpuMI CCSGG 2 cut(s) 201, 224
BsaAI YACGTR 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 223
BsiSI CCGG 2 cut(s) 200, 224
BslI CCNNNNNNNGG 1 cut(s) 223
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 2 cut(s) 248, 290
BssMI GATC 1 cut(s) 283
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 70
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 199, 222
BstSNI TACGTA 1 cut(s) 70
BsuI GTATCC 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 286
Csp6I GTAC 2 cut(s) 71, 227
CviJI RGCY 2 cut(s) 185, 195
CviKI_1 RGCY 2 cut(s) 185, 195
CviQI GTAC 2 cut(s) 71, 227
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DraI TTTAAA 1 cut(s) 48
Eco105I TACGTA 1 cut(s) 70
FaiI YATR 4 cut(s) 14, 79, 135, 149
FauI CCCGC 1 cut(s) 241
HapII CCGG 2 cut(s) 200, 224
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 1 cut(s) 271
HpaII CCGG 2 cut(s) 200, 224
Hpy166II GTNNAC 2 cut(s) 124, 229
Hpy188III TCNNGA 2 cut(s) 180, 266
Hpy8I GTNNAC 2 cut(s) 124, 229
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 69
Kzo9I GATC 1 cut(s) 283
LpnPI CCDG 5 cut(s) 213, 237, 246, 251, 260
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 98, 143
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MluCI AATT 3 cut(s) 139, 218, 238
MseI TTAA 2 cut(s) 17, 47
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 2 cut(s) 200, 224
MspR9I CCNGG 2 cut(s) 201, 224
NciI CCSGG 2 cut(s) 201, 224
NdeII GATC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 70
PshBI ATTAAT 1 cut(s) 17
PsiI TTATAA 1 cut(s) 135
RsaI GTAC 2 cut(s) 72, 228
RsaNI GTAC 2 cut(s) 71, 227
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 17, 47
Sau3AI GATC 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 201, 224
SetI ASST 5 cut(s) 72, 105, 187, 197, 265
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SnaBI TACGTA 1 cut(s) 70
Sse9I AATT 3 cut(s) 139, 218, 238
SsiI CCGC 2 cut(s) 248, 290
SspI AATATT 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 199, 222
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 1 cut(s) 72
TasI AATT 3 cut(s) 139, 218, 238
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 17, 47
Tru9I TTAA 2 cut(s) 17, 47
TscAI CASTG 1 cut(s) 286
TspRI CASTG 1 cut(s) 286
VspI ATTAAT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.